SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29490

Length: 2932 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene29490
CGTCGTGACCTTGGCTGTCACTCAAGAGCAGAGATTGGTGGAGTTGAAGAGGCTATGTGGCAAATGACTCTGCAACAACAGCATGAAAGTTTGGAGCCAGAAATTGGCTCTTATCCAGAAAGGCCCGGTGAACCTGACTGCACATATTACATGCGGACTGGACTTTGTGGCTTTGGCATGAGCTGTCGGTTTAACCATCCTCCAAACAGGAAGCAGGCTGCAGCAGCTGCAAGAAATAAAGGCGAGTATCCTGAAAGATTAGGTCAACCTGAATGCCAGTATTATTTGAAGACGGGAACTTGCAAATTTGGTGCTACATGCAAGTTCCATCATCCAAGAGATAAAGCAGGAAGCACAGGACGGGCAGCAATAAATGTCTTAGGCTACCCATTACGCCCGAATGAAAAGGAGTGTGCATACTATTTGAGAACGGGACAGTGCAAGTATGGTGCTACTTGTAAATTCCATCATCCACCACCAGTTGGTCCATTAGTTCCAGTGCGTGGGTCTTCACTTTTCACACCTGTACAATCTCCAACAACTCCTGGCCCTCAAGCCTATCCAGGAAGTCTGCAAACATGGCCAATGCAAAGGGCATCTTTTATTCAGAGTCCTCGCTGGCAAGGCCCTTCTAGTTATGCACCATTGATCCTTCCTCAAGGAATAGTGCCAGTTCCTAGCTGGAGTACATATCCTCAAGGACAGGTGGGTTCAATTTCATCTTCAGATGGTCAGCAACAAGCAATAGGAGCAGGTTTGGTCTATGGGCCCACATCCCAAACAGATCCAATGGCCTCTGGAATTCAGGGCACCTTTTCTTCTTTTCCACCTGGATCTCCAGGCATGGGGCCTCCAACGTTACAATTGCCATCGAGCAGTGCCCAGAGGGAAAGTATGTTCCCTGAAAGGCCTGGTCAGCAAGAATGTCAGTTCTACATGAAGACAGGCGACTGTAAATTTGGCATGACCTGTAGATACCATCATCCTAAAGAGAGGATCATTCCCATTCCAAACTGTATCCTCAATTCTCTTGGCTTACCTCTACGACCTGGGGCCCCAGTATGCATGTTCTTCTCTCGTTATGGTATCTGCAAGTTTGGACCAACCTGTAAATTTGATCATCCCATGGGACACTCTAGTTACAGTCAGTCAATCTCTTCACCAATTGATATTCCGGTTGGTCGTCATCAGATAGGATCTGCATCAGCTACTCTTGCTTCAGTTCCTTTGTCTTCAGACTCGGTTGTGGATTCTGGTGCAGGAAAGTCTATAGAACACACTTCTACAGCAGAAGCTCGTCAGCAGTCATCTGGTGTTGAAAATTTAGGGCCAGATGCATAATGTTTCCACTTCAAGAAGAAAAGTTGGCTTTACTTTTTTGCAAGGTTGACAGGCTCCACTGGTTTAAACTTTAAACGTGAACCAGCTGTCTATTCTGTCAACTGGGTGCATAAGCCACACTAACATTGTCTGTTCAGGTTCTTGACCAATAAGCAGCAGATAATTTCTTCATGATAGTTGTGACCAGAGCTGTTTGGAATATGGTGAACATAATGAAGCTCTTCATAATTGTCAAAGTCACCAGTTTGCGTTGGACAAGGCTGGATGAATTTCATTGTAACTAGAAATTTCATTCGCCTTTGTTTCCTCCTATGAAAAGAAAGATGCTTTTTTCCGTGTTGATCAAGGCACACATTTCTCTTCCTCTTTTGGGTGGTCTTCTAAGTCCCTTGACTTTCATAAACATTGCTTCTGCCAGGTCCTCCTGTAGTCTCAATCAATAACTTCCTTTCYTTGTGAGGAGGCTTGCCTCTGTTTTCTGTTCAGCATTGTAGCTTTCAGCCTATGTGCTAGATTTCTCCTGTTTCTAATGCTATTATGTCAAATGCATCCTGTGTCCTACTATACTTATTTTCTCCTTTTAGGCTTGTAATTAGTAATTTGGTTTGATTGGTTTGTACATTCCATTGGAAACCATTATCCTTGAGAGTTCTCTCTGTAACTTGATTTGGGGACGTCCTTACTACTTTGTTCTCTAGTTACTGTTAATGCCTGTGATTTTATTGTCCTTGTCATCAGTAGCCCTTCACCAGATGCCATTTTGTGCTCAAGCCATGTAAGTTCACCTCTATCTACTTGTCAGCATCCTTCCTTTTAGTTATCATCTGTACAATCTAAGTGCTATTATTTTATTTATTCTGCATTATCAAATGCACCTTCAAATTACTGGGGTCTAGTTGGTCTTTCTTTGTCTGCAGTATTTTTTAGTAGTCCCTTCCATCATACATTCATCTTCCAAGTTCTTATGCTCAAGCCTTGACTCAATGCAACCTAGTTGGCGACATGAGCACATTTACTGGAAGCATTGAATGGCTTCATATTCTTCAATTGGTCAAGACCTGTGAAATTCCAGCTTTCGTATTCCTGACAACAGCTTTGTTGAAGCATAGAATTGGAATGAGCACCAGAACCAATTCATAGTTTAGAGACAACTGGTAGATTCTCTCCTCTGCAAGTCTCAGAGGAGAGCTTTGATCAAACAGTTGGAACTCTTGACATTTGAGAAACTCCAGTTAGAAATATCCATTTTAAATGTATGCTATTTTTCTGCTTTGGATCCATGAAAATTGAGAAACACTTCTCAGGTTTGGATAATAATATTTTTAGAATCATGATTCATGAGGTATTTCATACTAGGGGCTACATTTCTTGGCAATACAGGTCTTTTGCATGGTGCAATCCTTTTTCTATTCCGTACATTCATAAGCTTGAGGGCTATAAATGGATAATTATTTATTTTGGGGAAAAGTATATTCTGTAGGTTTTCAAACTTGAGACAGTCTCTGTTGATGGATACCGATATATACATTTGTCGGTAGAGTCATGTGGAAATCTGTGCTGATTATCAAAAATAGTTTTTTAAGAATGTAGA

Ace file of the UniGene sp_v1.1_unigene29490

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula]	-	-	54%
FL-Next	sp=Zinc finger CCCH domain-containing protein ZFN-like; Pisum sativum (Garden pea).	-	-	58%
Blast2go	zinc finger protein	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, CCCH-type	IPR000571	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SWF9

Fln msg:

Fln protein: MWQMTLQQQHESLEPEIGSYPERPGEPDCTYYMRTGLCGFGMSCRFNHPPNRKQAAAAARNKGEYPERLGQPECQYYLKTGTCKFGATCKFHHPRDKAGSTGRAAINVLGYPLRPNEKECAYYLRTGQCKYGATCKFHHPPPVGPLVPVRGSSLFTPVQSPTTPGPQAYPGSLQTWPMQRASFIQSPRWQGPSSYAPLILPQGIVPVPSWSTYPQGQVGSISSSDGQQQAIGAGLVYGPTSQTDPMASGIQGTFSSFPPGSPGMGPPTLQLPSSSAQRESMFPERPGQQECQFYMKTGDCKFGMTCRYHHPKERIIPIPNCILNSLGLPLRPGAPVCMFFSRYGICKFGPTCKFDHPMGHSSYSQSISSPIDIPVGRHQIGSASATLASVPLSSDSVVDSGAGKSIEHTSTAEARQQSSGVENLGPDA*

Protein Length: 430

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAGCAGAGATTGGTGGAGTTGAAGAGGCT_-_ATGTGGCAAATGACTCTGCAACAACAGCATGAAAGTTTGGAGCCAGAAATTGGCTCTTATCCAGAAAGGCCCGGTGAACCTGACTGCACATATTACATGCGGACTGGACTTTGTGGCTTTGGCATGAGCTGTCGGTTTAACCATCCTCCAAACAGGAAGCAGGCTGCAGCAGCTGCAAGAAATAAAGGCGAGTATCCTGAAAGATTAGGTCAACCTGAATGCCAGTATTATTTGAAGACGGGAACTTGCAAATTTGGTGCTACATGCAAGTTCCATCATCCAAGAGATAAAGCAGGAAGCACAGGACGGGCAGCAATAAATGTCTTAGGCTACCCATTACGCCCGAATGAAAAGGAGTGTGCATACTATTTGAGAACGGGACAGTGCAAGTATGGTGCTACTTGTAAATTCCATCATCCACCACCAGTTGGTCCATTAGTTCCAGTGCGTGGGTCTTCACTTTTCACACCTGTACAATCTCCAACAACTCCTGGCCCTCAAGCCTATCCAGGAAGTCTGCAAACATGGCCAATGCAAAGGGCATCTTTTATTCAGAGTCCTCGCTGGCAAGGCCCTTCTAGTTATGCACCATTGATCCTTCCTCAAGGAATAGTGCCAGTTCCTAGCTGGAGTACATATCCTCAAGGACAGGTGGGTTCAATTTCATCTTCAGATGGTCAGCAACAAGCAATAGGAGCAGGTTTGGTCTATGGGCCCACATCCCAAACAGATCCAATGGCCTCTGGAATTCAGGGCACCTTTTCTTCTTTTCCACCTGGATCTCCAGGCATGGGGCCTCCAACGTTACAATTGCCATCGAGCAGTGCCCAGAGGGAAAGTATGTTCCCTGAAAGGCCTGGTCAGCAAGAATGTCAGTTCTACATGAAGACAGGCGACTGTAAATTTGGCATGACCTGTAGATACCATCATCCTAAAGAGAGGATCATTCCCATTCCAAACTGTATCCTCAATTCTCTTGGCTTACCTCTACGACCTGGGGCCCCAGTATGCATGTTCTTCTCTCGTTATGGTATCTGCAAGTTTGGACCAACCTGTAAATTTGATCATCCCATGGGACACTCTAGTTACAGTCAGTCAATCTCTTCACCAATTGATATTCCGGTTGGTCGTCATCAGATAGGATCTGCATCAGCTACTCTTGCTTCAGTTCCTTTGTCTTCAGACTCGGTTGTGGATTCTGGTGCAGGAAAGTCTATAGAACACACTTCTACAGCAGAAGCTCGTCAGCAGTCATCTGGTGTTGAAAATTTAGGGCCAGATGCATAA___TGTTTCCACTTCAAGAAGAAAAGTTGGCTTTACTTTTTTGCAAGGTTGACAGGCTCCACTGGTTTAAACTTTAAACGTGAACCAGCTGTCTATTCTGTCAACTGGGTGCATAAGCCACACTAACATTGTCTGTTCAGGTTCTTGACCAATAAGCAGCAGATAATTTCTTCATGATAGTTGTGACCAGAGCTGTTTGGAATATGGTGAACATAATGAAGCTCTTCATAATTGTCAAAGTCACCAGTTTGCGTTGGACAAGGCTGGATGAATTTCATTGTAACTAGAAATTTCATTCGCCTTTGTTTCCTCCTATGAAAAGAAAGATGCTTTTTTCCGTGTTGATCAAGGCACACATTTCTCTTCCTCTTTTGGGTGGTCTTCTAAGTCCCTTGACTTTCATAAACATTGCTTCTGCCAGGTCCTCCTGTAGTCTCAATCAATAACTTCCTTTCtTTGTGAGGAGGCTTGCCTCTGTTTTCTGTTCAGCATTGTAGCTTTCAGCCTATGTGCTAGATTTCTCCTGTTTCTAATGCTATTATGTCAAATGCATCCTGTGTCCTACTATACTTATTTTCTCCTTTTAGGCTTGTAATTAGTAATTTGGTTTGATTGGTTTGTACATTCCATTGGAAACCATTATCCTTGAGAGTTCTCTCTGTAACTTGATTTGGGGACGTCCTTACTACTTTGTTCTCTAGTTACTGTTAATGCCTGTGATTTTATTGTCCTTGTCATCAGTAGCCCTTCACCAGATGCCATTTTGTGCTCAAGCCATGTAAGTTCACCTCTATCTACTTGTCAGCATCCTTCCTTTTAGTTATCATCTGTACAATCTAAGTGCTATTATTTTATTTATTCTGCATTATCAAATGCACCTTCAAATTACTGGGGTCTAGTTGGTCTTTCTTTGTCTGCAGTATTTTTTAGTAGTCCCTTCCATCATACATTCATCTTCCAAGTTCTTATGCTCAAGCCTTGACTCAATGCAACCTAGTTGGCGACATGAGCACATTTACTGGAAGCATTGAATGGCTTCATATTCTTCAATTGGTCAAGACCTGTGAAATTCCAGCTTTCGTATTCCTGACAACAGCTTTGTTGAAGCATAGAATTGGAATGAGCACCAGAACCAATTCATAGTTTAGAGACAACTGGTAGATTCTCTCCTCTGCAAGTCTCAGAGGAGAGCTTTGATCAAACAGTTGGAACTCTTGACATTTGAGAAACTCCAGTTAGAAATATCCATTTTAAATGTATGCTATTTTTCTGCTTTGGATCCATGAAAATTGAGAAACACTTCTCAGGTTTGGATAATAATATTTTTAGAATCATGATTCATGAGGTATTTCATACTAGGGGCTACATTTCTTGGCAATACAGGTCTTTTGCATGGTGCAATCCTTTTTCTATTCCGTACATTCATAAGCTTGAGGGCTATAAATGGATAATTATTTATTTTGGGGAAAAGTATATTCTGTAGGTTTTCAAACTTGAGACAGTCTCTGTTGATGGATACCGATATATACATTTGTCGGTAGAGTCATGTGGAAATCTGTGCTGATTATCAAAAATAGTTTTTTAAGAATGTAGA

Fln Alignment:

sp_v1.1_unigene29490___EEAMWQMTLQQQHESLEPEIGSYPERPGEPDCTYYMRTGLCGFGMSCRFNHPPNRKQXXXXXRNKGEYPERLGQPECQYYLKTGTCKFGATCKFHHPRDKAGSTGRAAINVLGYPLRPNEKECAYYLRTGQCKYGATCKFHHXXXXXXXXXXRGSSLFTPVQSPTTPGPQAYPGSLQTWPMQRASFIQSPRWQGPSSYAPLILPQGIVPVPSWSTYPQGQVGSISSSDGQQQAIGAGLVYGPTSQTDPMASGIQXXXXXXXXXXXXXXXXXLQLPSSSAQRESMFPERPGQQECQFYMKTGDCKFGMTCRYHHPKERIIPIPNCILNSLGLPLRPGAPVCMFFSRYGICKFGPTCKFDHPMGHXXXXXXXXXPIDIPVGRHQIGSASATLASVPLXXXXXXXXGAGKSIEHTSTAEARQQSSGVENL
Q9SWF9_______________QEAMWQMNLRSSETM---ESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESERAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYAAGITNW--SSSSYVPSPRWQGPSSYAPLILPQGVVSVPGWSTY-GGQMG----SESPQQTMRNDQTYGTSHQGELENAGLQGAYSQYRSGSVPVGFYAL-------QRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMG--IFTYNVASPLADTPGRRLLGSSSGT-AALSLSSEGLVESGTAKP-RRLSLSETRPIPPGDDNI

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
1000			88	11	0.991528
1001	88		11		0.991528
1003	88		11		0.991528
1088		83		16	0.999991
1312		85		14	1.0
1438			83	16	1.0
1464		86		13	1.0
1511	95		5		0.997749
1841		50		50	1.0
2125	90		10		0.90298
2134	10	90			0.90298
2140	90		10		0.90298
2141		90	10		0.90298
2143	90			10	0.90298
2145	90			10	0.90298
2146		10		90	0.90298
2147	10		90		0.90298
2178		86	13		0.999973
2185		13		86	0.999973
2189	86		13		0.999973
2190		86	13		0.999973
2191		13		86	0.999973
2458	89			10	0.999919
2459	10	89			0.999919
2460	10	89			0.999919
2462		10	89		0.999919
2464			88	11	0.999937
2465	88	11			0.999937
2467	88			11	0.999937
2474		88		11	0.999937
2476			88	11	0.999937
2478		88	11		0.999937
2479			11	83	0.999887
2541		80		20	0.995493
2596			83	16	0.994512
2597		83	16		0.994512
2598			16	83	0.994512
2599			16	83	0.994512
2600			16	83	0.994512
2646	14			85	0.993533
2648	71		28		1.0
2786			14	85	0.993533
2788		14	85		0.993533
2873	25			75	0.996473
2882	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain