SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29448

Length: 3073 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene29448
ATGGGGACGCCTTTCATAAAAGAAAACAACATAGGGAGCTGTGTTCAGAAGCGGAACAGCATAGATATTGAAGGGATATAGACTGTATATTGAAGGGATAAAAATCAGCCAGTCGAGCCGGTGTGATTGTCAGAGATCAAGTATATTAAGAGCTTCTGTCTATAATTTTACTGCCTCTTTATCATGGATAGCTTTAATGGTAAGAACGCATGCAGTAGATTGGATACGGTGCTCACAGGACTCATAGAGGAATTTCAGCTATTGAGTTTGTCGAATTTACGAAAGCCCAAAAATGAACAGAATCCTAGCTACGAGAAGTTCCTGAAAACGCTGATGAAGGGCGTGGAATTGCTGAAAAAGTGGGAGGGTACCTGCTGTTTTAAATTTTTTCATAGCCTCAGATATGGATTTCAAATTCGTCAGCTGGAGGGGGAAATCTCCGACTATCTTCGGTACCAGATGCCTGTCAACATCTTTCTTGAAGTGAAGAATCTCATAGCAGAGCTGACGAACCTTCGCCAACACTACGAGTTGGGGTCAATGGATGAGAGCAAGATGAATGAAACAATCTTCAAACACGTGTCTAAGCTTACGAATGATCCACAACAAAATGCGATGATACTTCAACAAATGGGTGCAGATAATACGTTTGATGGTGCTCTTGTCGAGGTTCCTTGTAATTATGTTGGGTTGGGAATGTCTGATTTTGCAGTTGGGTTGGAAAAAAATATTTGGAATTTGAAGCGAACTCTGCTCCAGAGTGAGGTGACCGTTGTTGGGGTGCATGGTATGGGAGGTCTCGGCAAAACTACGCTGGCATTGGCCCTCAGCAACGATAAAGACATCAAAGATGTTTTCCAAAACAATATCATTTTCATCACTGTGTCAGAGTCCCCAAACCTGAAGGTAATTTTAGAGACCATGTGGGAGAAGATTGTCCGGAGGAAGAGACCTGAATTTCAGAATGTGGAGGAAGCACATAGAGAGCTGCAGCAGCAACTGCTAAGGCAAGCCAAGCCAACTCTGGTGATATTGGATGATGTCTGGTCTAGGGCAAATTTGGAAAAATTGTTATTTGAAGGTGTAGGATATAAGACACTTGTGACAACCCGAGATCGTTCTACCATCCCGAAAATGACTTCTACTCAGCTTTATGAATTGCCATTGCTGGATGATGGTGATGCTCTGTCCCTTTTCTGCTTTTGGGCTTTTGGACAGAAATCAATTCCAAGCACTGCTAATGAACATCTAGTCAAGCAGGTGCAAGCACAGTGTAAAGGGCTGCCACTGGCTCTGAAGGTGATAGGAAGCTCTTTGCATGGTGAGCCTTGGCCGGTGTGGGAGAGTGCCAAGAAGAAGCTATTAAATGGTGAATCAATATCAGATTATCACAAAGAAGGGCTTCTTAAATGCTTGGAGACCAGTATTGATGTCCTGGATGAAGAAGCACGAGAGTGCTTCTTAGACCTGGGGTCATTTCCAGAGGATAGAAAAATATCTGTGGATGCACTATTGGACATTTGGGTTTATGTGCGAAAGATAGAGTGGCAGGATGCTTTTGTCATCTTGCTAGAACTTGCAAGTAGAAATCTGTTGAATTTAACAAGCAATCTCAGGAGTCAACCAATTAATTATGGAAGTGCCTCTGAGCTGTACTTTTCCCAGCATGATGTCATGCGAGCCTTGGCCCTAGATATGGCATCCCGAGATAGGATAGTTTGCAGGAAGAGGTTGTTTATGCCTAAAAAGGAGGAGAGTGTACCAGGGAAATGGGAGCTGTTCAAGGATCAAGCGTTTGATGCTCAAATAGTTTCCATTCACACAGGGACAATGGAAGAGAATCAGTGGTGTAAGATGAATTTTTGTGAGGCAGAGGCTTTGGTTCTACTCTTTTCCGCAACCAATTACTCTCTTCCATCGTTTTTGAGTAAAATGAGAAAATTGAAAGTCCTCATAGTATTTAATTACGGGTCCAAGAGAGCCACAGTGAAGGGTCTTCCATTGTTATCATCACTCGCTCAGCTCAAGACTATTCGTTTGGAGAGGTTGATTGTGCCCCCACTTCAAGAACACAGTAAAGTCTTACAGAACTTAGAAAAGGTATCTTTGAGCTTATGTGAAGGGCTTGGAAATATGTCCCGGTTCAATGGAAACCAGTCGAATCTAAAGCTTCCCATAATGCTAGATTTTAACATGGATCATTGCTGTGATTTGGAGGAGTTGCCCGTTGGTATTTGTGACATGTCTTCAGCTCAAAAGTGGTCTATCACTAACTGTCACCTTCTTCGAAAGTTACCTGATGATCTTGGGAGGCTCAGTTCTTTAAGAATGTTAAGAATATCTGCATGTCTAGGTCTGCAAGTGCTTCCAGCATCTATTGGAAAACTTGGGAAGCTGGAATATATGGACATTTCTTTATGTGAGTGCTTGAAAGAACTTCCTGAGGAAATAGGGCAGCTGAAGAAACTCGAGGAGCTTGACATGAGAGAGTGTTCTCGGTTGAGGAAGCTGCCTAAATCAGTTGGAGGGCTGAAATCTCTAAAGCATGTTATATGTGATGAAAAGATTGGGCAGCAATGGAATCGTCTTAAAAGCTTTTCTGCTACTATGGATCTTAGAGTTGAAATTGTAGAAGCTCACTTCAGCTTAGATTGGCTGGATGGTTAAGATCTCTCTCAAACAGGATGCCAAGTGCAAGTAGACTGGATCAGGATGAGTGCAGACATGTTATCCATGTTCTATGGGCATTATTACCTCTTCAGAAATTAGTTATCCGTAGTTTCAAAGCAGTGTGTCTAGTCCGGGTGGTATATCTAAATAAATAGTGGTAAAGAATACAAGTGTGTATCTGGGGTGTCTAGTTGTCATCGTAACATTAAGGACTTTTTAAATATTGTATTGCAAGAGTAAATGACTTTAAGCATTGTGTTTTAAGACTTTAAATATTGTGTTTTAAGACTTTAAATATTGTGTTTTAAGATTATAAGTTCACTTCAGTTGTGGACAGAAGTGAACAAGGACAAATTTGTAATGGATTTGTGATGTCTGTAAAAAATTTCAAAATTTGCTTTGC

Ace file of the UniGene sp_v1.1_unigene29448

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=1 Tax=Pinus lambertiana RepID=Q1L6F3_PINLA	-	-	92%
FL-Next	tr=CC-NBS-LRR resistance-like protein; Pinus lambertiana (Sugar pine).	-	-	96%
Blast2go	leucine rich repeat family expressed	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Disease resistance protein	IPR000767	-	0.0	73%
Blast2go	NB-ARC	IPR002182	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q1L6F3

Fln msg: your sequence is longer than subject: 828 - 777

Fln protein: MDSFNGKNACSRLDTVLTGLIEEFQLLSLSNLRKPKNEQNPSYEKFLKTLMKGVELLKKWEGTCCFKFFHSLRYGFQIRQLEGEISDYLRYQMPVNIFLEVKNLIAELTNLRQHYELGSMDESKMNETIFKHVSKLTNDPQQNAMILQQMGADNTFDGALVEVPCNYVGLGMSDFAVGLEKNIWNLKRTLLQSEVTVVGVHGMGGLGKTTLALALSNDKDIKDVFQNNIIFITVSESPNLKVILETMWEKIVRRKRPEFQNVEEAHRELQQQLLRQAKPTLVILDDVWSRANLEKLLFEGVGYKTLVTTRDRSTIPKMTSTQLYELPLLDDGDALSLFCFWAFGQKSIPSTANEHLVKQVQAQCKGLPLALKVIGSSLHGEPWPVWESAKKKLLNGESISDYHKEGLLKCLETSIDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKIEWQDAFVILLELASRNLLNLTSNLRSQPINYGSASELYFSQHDVMRALALDMASRDRIVCRKRLFMPKKEESVPGKWELFKDQAFDAQIVSIHTGTMEENQWCKMNFCEAEALVLLFSATNYSLPSFLSKMRKLKVLIVFNYGSKRATVKGLPLLSSLAQLKTIRLERLIVPPLQEHSKVLQNLEKVSLSLCEGLGNMSRFNGNQSNLKLPIMLDFNMDHCCDLEELPVGICDMSSAQKWSITNCHLLRKLPDDLGRLSSLRMLRISACLGLQVLPASIGKLGKLEYMDISLCECLKELPEEIGQLKKLEELDMRECSRLRKLPKSVGGLKSLKHVICDEKIGQQWNRLKSFSATMDLRVEIVEAHFSLDWLDG*

Protein Length: 829

Fln nts: ATGGGGACGCCTTTCATAAAAGAAAACAACATAGGGAGCTGTGTTCAGAAGCGGAACAGCATAGATATTGAAGGGATATAGACTGTATATTGAAGGGATAAAAATCAGCCAGTCGAGCCGGTGTGATTGTCAGAGATCAAGTATATTAAGAGCTTCTGTCTATAATTTTACTGCCTCTTTATC_-_ATGGATAGCTTTAATGGTAAGAACGCATGCAGTAGATTGGATACGGTGCTCACAGGACTCATAGAGGAATTTCAGCTATTGAGTTTGTCGAATTTACGAAAGCCCAAAAATGAACAGAATCCTAGCTACGAGAAGTTCCTGAAAACGCTGATGAAGGGCGTGGAATTGCTGAAAAAGTGGGAGGGTACCTGCTGTTTTAAATTTTTTCATAGCCTCAGATATGGATTTCAAATTCGTCAGCTGGAGGGGGAAATCTCCGACTATCTTCGGTACCAGATGCCTGTCAACATCTTTCTTGAAGTGAAGAATCTCATAGCAGAGCTGACGAACCTTCGCCAACACTACGAGTTGGGGTCAATGGATGAGAGCAAGATGAATGAAACAATCTTCAAACACGTGTCTAAGCTTACGAATGATCCACAACAAAATGCGATGATACTTCAACAAATGGGTGCAGATAATACGTTTGATGGTGCTCTTGTCGAGGTTCCTTGTAATTATGTTGGGTTGGGAATGTCTGATTTTGCAGTTGGGTTGGAAAAAAATATTTGGAATTTGAAGCGAACTCTGCTCCAGAGTGAGGTGACCGTTGTTGGGGTGCATGGTATGGGAGGTCTCGGCAAAACTACGCTGGCATTGGCCCTCAGCAACGATAAAGACATCAAAGATGTTTTCCAAAACAATATCATTTTCATCACTGTGTCAGAGTCCCCAAACCTGAAGGTAATTTTAGAGACCATGTGGGAGAAGATTGTCCGGAGGAAGAGACCTGAATTTCAGAATGTGGAGGAAGCACATAGAGAGCTGCAGCAGCAACTGCTAAGGCAAGCCAAGCCAACTCTGGTGATATTGGATGATGTCTGGTCTAGGGCAAATTTGGAAAAATTGTTATTTGAAGGTGTAGGATATAAGACACTTGTGACAACCCGAGATCGTTCTACCATCCCGAAAATGACTTCTACTCAGCTTTATGAATTGCCATTGCTGGATGATGGTGATGCTCTGTCCCTTTTCTGCTTTTGGGCTTTTGGACAGAAATCAATTCCAAGCACTGCTAATGAACATCTAGTCAAGCAGGTGCAAGCACAGTGTAAAGGGCTGCCACTGGCTCTGAAGGTGATAGGAAGCTCTTTGCATGGTGAGCCTTGGCCGGTGTGGGAGAGTGCCAAGAAGAAGCTATTAAATGGTGAATCAATATCAGATTATCACAAAGAAGGGCTTCTTAAATGCTTGGAGACCAGTATTGATGTCCTGGATGAAGAAGCACGAGAGTGCTTCTTAGACCTGGGGTCATTTCCAGAGGATAGAAAAATATCTGTGGATGCACTATTGGACATTTGGGTTTATGTGCGAAAGATAGAGTGGCAGGATGCTTTTGTCATCTTGCTAGAACTTGCAAGTAGAAATCTGTTGAATTTAACAAGCAATCTCAGGAGTCAACCAATTAATTATGGAAGTGCCTCTGAGCTGTACTTTTCCCAGCATGATGTCATGCGAGCCTTGGCCCTAGATATGGCATCCCGAGATAGGATAGTTTGCAGGAAGAGGTTGTTTATGCCTAAAAAGGAGGAGAGTGTACCAGGGAAATGGGAGCTGTTCAAGGATCAAGCGTTTGATGCTCAAATAGTTTCCATTCACACAGGGACAATGGAAGAGAATCAGTGGTGTAAGATGAATTTTTGTGAGGCAGAGGCTTTGGTTCTACTCTTTTCCGCAACCAATTACTCTCTTCCATCGTTTTTGAGTAAAATGAGAAAATTGAAAGTCCTCATAGTATTTAATTACGGGTCCAAGAGAGCCACAGTGAAGGGTCTTCCATTGTTATCATCACTCGCTCAGCTCAAGACTATTCGTTTGGAGAGGTTGATTGTGCCCCCACTTCAAGAACACAGTAAAGTCTTACAGAACTTAGAAAAGGTATCTTTGAGCTTATGTGAAGGGCTTGGAAATATGTCCCGGTTCAATGGAAACCAGTCGAATCTAAAGCTTCCCATAATGCTAGATTTTAACATGGATCATTGCTGTGATTTGGAGGAGTTGCCCGTTGGTATTTGTGACATGTCTTCAGCTCAAAAGTGGTCTATCACTAACTGTCACCTTCTTCGAAAGTTACCTGATGATCTTGGGAGGCTCAGTTCTTTAAGAATGTTAAGAATATCTGCATGTCTAGGTCTGCAAGTGCTTCCAGCATCTATTGGAAAACTTGGGAAGCTGGAATATATGGACATTTCTTTATGTGAGTGCTTGAAAGAACTTCCTGAGGAAATAGGGCAGCTGAAGAAACTCGAGGAGCTTGACATGAGAGAGTGTTCTCGGTTGAGGAAGCTGCCTAAATCAGTTGGAGGGCTGAAATCTCTAAAGCATGTTATATGTGATGAAAAGATTGGGCAGCAATGGAATCGTCTTAAAAGCTTTTCTGCTACTATGGATCTTAGAGTTGAAATTGTAGAAGCTCACTTCAGCTTAGATTGGCTGGATGGTTAA___GATCTCTCTCAAACAGGATGCCAAGTGCAAGTAGACTGGATCAGGATGAGTGCAGACATGTTATCCATGTTCTATGGGCATTATTACCTCTTCAGAAATTAGTTATCCGTAGTTTCAAAGCAGTGTGTCTAGTCCGGGTGGTATATCTAAATAAATAGTGGTAAAGAATACAAGTGTGTATCTGGGGTGTCTAGTTGTCATCGTAACATTAAGGACTTTTTAAATATTGTATTGCAAGAGTAAATGACTTTAAGCATTGTGTTTTAAGACTTTAAATATTGTGTTTTAAGACTTTAAATATTGTGTTTTAAGATTATAAGTTCACTTCAGTTGTGGACAGAAGTGAACAAGGACAAATTTGTAATGGATTTGTGATGTCTGTAAAAAATTTCAAAATTTGCTTTGC

Fln Alignment:

sp_v1.1_unigene29448___MKGVELLKKWEGTCCFKFFHSLRYGFQIRQLEGEISDYLRYQMPVNIFLEVKNLIAELTNLRQHYELGSMDESKMNETIFKHVSKLTNDPQQNAMILQQMGADNTFDGALVEVPCNYVGLGMSDFAVGLEKNIWNLKRTLLQSEVTVVGVHXXXXXXXXXXXXXXSNDKDIKDVFQNNIIFITVSESPNLKVILETMWEKIVRRKRPEFQNVEEAHRELQQQLLRQAKPTLVILDDVWSRANLEKLLFEGVGYKTLVTTRDRSTIPKMTSTQLYELPLLDDGDALSLFCFWAFGQKSIPSTANEHLVKQVQAQCKGLPLALKVIGSSLHGEPWPVWESAKKKLLNGESISDYHKEGLLKCLETSIDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKIEWQDAFVIXXXXXXXXXXXXXXXXXXQPINYGSASELYFSQHDVMRALALDMASRDRIVCRKRLFMPKKEESVPGKWELFKDQAFDAQIVSIHTGTMEENQWCKMNFCEAEALVLLFSATNYSLPSFLSKMRKLKVLIVFNYGSKRATVKGLPLLSSLAQLKTIRLERLIVPPLQEHSKVLQNLEKVSLSLCEGLGNMSRFNGNQSNLKLPIMLDFNMDHCCDLEELPVGICDMSSAQKWSITNCHLLRKLPDDLGRLSSLRMLRISACLGLQVLPASIGKLGKLEYMDISLCECLKELPEEIGQLKKLEELDMRECSRLRKLPKSVGGLKSLKHVICDEKIGQQWNRLKSFSATMDLRVEIVEAHFSLDWLDG
Q1L6F3_______________MKGVELLKKWEGTSCFKFFHSLRYGFQIRQLEGEISDFLRYQMPVNIFLEVKNLIAELTNLRQQYELGSMDESKMNETIFKHVSKLTNDPQQNAIILNQMGADNMFDGALVEVPCNHVGLGMSDFAVGLEKNIWNLKRALLQSEVTVVGVHGMGGLGKTTLALALSNDKDIKDVFQNNIIFITVSESPNLKVILETMWEKIVRRKRPEFQNVEEAHRQLQQQLLRQAKPTLVILDDVWSRANLEKLLFEGVGYKTLVTTRDRSTIPKMTSTQLYELPLLDDGDALSLFCFWAFGQKSIPSTANEHLVKQVQAQCKGLPLALKVIGSSLHGEPWPVWESAKKKLLNGESISDYHKEGLFKCLETSIGVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKIEWQDAFVILLELASRNLLNLTSNLRSQAINYGSASELYFSQHDVMRALALDMASRDRIFCRKRLFMPRKEESLPGKWELFKDQAFDAQIVSIHTGTMEEDQWCKMNFCEAEALVLLFSATNYFLPSFLSKMRKLKVLIVFNYGSKRATVKGLPLLSSLAQLKTIRLERLVVPPLQEHSKVLQKLEKVSLSLCEGLGNMSRFNGNQSNLKLPVMLDFNMDHCCDLEELPLGICDMSSAQKWSITNCHLLRKLPDDLGRLSSLRMLRISACLGLKELPASIGKLGKLEYMDISLCECLKELPEEIGQLKKLEELDMRECARLRKLPKSVGGLKSLKHVICDEKIGQQWNRLKSFSATMDLRVEIVEAHFSLDWLDG

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
39	33	66			0.997464
41	25		75		0.996481
44			33	66	1.0
45			33	66	1.0
46		75	25		0.996474
60		80		20	0.995493
82	80		20		0.995493
424		20		80	0.995493
1156		27		72	1.0
1195		12		87	0.992554
1282	83	16			0.994512
1346		75	25		0.996473
1347		75	25		0.996473
1468	85		14		0.993533
1849		85	14		0.999981
1850	85		14		0.999981
2325		10		90	0.90298
2974	68		31		1.0
2975	68		31		1.0
2976			33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain