SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29439

Length: 845 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29439

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase, putative (EC:3.2.1.21)	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	beta-glucosidase-like protein	-	-	76%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 1	IPR001360	-	76%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	76%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ52

Fln msg: Distance to subject end: 145 aas, your sequence is shorter than subject: 262 - 407

Fln protein: MGMDLYRFSISWSRIFPKGSPRHGGVNEEGIAYYNNLINELLKNGMEPFVTLYHWDMPQALEDEYGGFRSKRVVEDFGVFAEECFRAFGDRVKYWTTINEPLTFSLYGYDLGLHAPGRCSPGFGNCTAGNSATEPYIVTHNMLLAHSAAVKLYRTKYQGKQKGSIGIALVVNWMVPYSNSLLDQEATQRAIDFRIGWFLDPLTSGKYPDSMRSLVGARLPLFSSEEAKDLKGSFDFLGFNYYSTDFTINNSTPQNPLDTDYV

Protein Length: 263

Fln nts: GGATGTTGCAGTAGATCAATACCACCGCTATAAGGAAGATGTTCAGCATCTCAAGTAC_-_ATGGGAATGGACCTGTATCGTTTTTCTATTTCCTGGTCACGCATATTTCCCAAAGGATCACCAAGACACGGAGGAGTCAATGAAGAGGGGATCGCTTATTACAATAATCTCATCAACGAGCTGCTCAAGAATGGTATGGAGCCTTTCGTGACACTGTATCATTGGGACATGCCGCAAGCTCTGGAGGACGAGTACGGGGGATTCCGTAGTAAAAGAGTCGTGGAGGATTTTGGCGTGTTCGCAGAAGAATGTTTCCGAGCTTTCGGAGACCGTGTGAAGTATTGGACAACTATAAACGAACCGCTCACCTTCTCATTATATGGCTACGATCTAGGGCTTCACGCACCGGGTCGCTGTTCGCCCGGATTTGGAAACTGTACAGCGGGGAACTCTGCAACAGAGCCTTACATAGTAACCCATAATATGCTTCTAGCACATAGTGCCGCCGTAAAATTATATAGGACTAAATACCAGGGGAAGCAGAAGGGTTCCATAGGCATAGCACTTGTGGTGAACTGGATGGTGCCATACTCAAACTCTTTGCTCGATCAAGAGGCTACTCAGAGAGCAATCGACTTCAGAATAGGATGGTTTCTGGATCCACTGACGTCGGGGAAGTACCCTGACTCTATGCGAAGCTTGGTGGGAGCACGCTTGCCACTATTCAGCAGTGAAGAGGCCAAAGATCTAAAAGGCTCATTCGACTTTCTTGGTTTTAATTATTACTCAACTGACTTTACCATCAACAATTCCACTCCACAAAATCCCTTGGACACTGACTACGTTC

Fln Alignment:

sp_v1.1_unigene29439___MGMDLYRFSISWSRIFPKGSPRHGGVNEEGIAYYNNLINELLKNGMEPFVTLYHWDMPQALEDEYGGFRSKRVVEDFGVFAEECFRAFGDRVKYWTTINEPLTFSLYGYDLGLHAPGRCSPGFGNCTAGNSATEPYIVTHNMLLAHSAAVKLYRTKYQGKQKGSIGIALVVNWMVPYSNSLLDQEATQRAIDFRIGWFLDPLTSGKYPDSMRSLVGARLPLFSSEEAKDLKGSFDFLGFNYYSTDFTINNSTPQNPLDTDYV
B8LQ52_______________MGMDVYRFSISWSRIFPKGSPRHGRVNEEGIIYYNNLINELLKNGIEPFITLFHWDMPQALEDEYGGFRSKRIVEDFGIFAEECFRAFGDRVKYWVTVNEPLVFSLGGYDLGIHAPGRCSAGFGNCTAGNSAKEPYMVTHNMLLAHAAAVKIYRTKYQGNQKGSIGIALVVSWVVPFTKSKLDQRAARRALDFRIGWFLDPLTLGKYPDSVTSLVGARLPRFTAEEANALKGSFDFLGYNYYTTQYTISNPNPPNPLNTDYL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
538	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain