SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29415

Length: 1921 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29415

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[O] COG0464 ATPases of the AAA+ class	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	vacuolar sorting protein 4b	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	endosome organization	GO:0007032	Biological Process	92%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	multivesicular body	GO:0005771	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	AAA+ ATPase domain	IPR003593	-	92%
Blast2go	ATPase, AAA-type, core	IPR003959	-	92%
Blast2go	ATPase, AAA-type, conserved site	IPR003960	-	92%
Blast2go	MIT	IPR007330	-	92%
Blast2go	Vps4 oligomerisation, C-terminal	IPR015415	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2N1

Fln msg:

Fln protein: MYSNFKEQAIEYVRQAVKEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGASAGPAANGDAAVVTRAKTKPGNKDGDGDGEDPEQTKLRAGLNSAIIREKPNVKWSDVSGLESAKQALQEAVILPVKFPQFFTGRRKPWKAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMARDSAPSIIFIDEIDSLCGTRGESNESEASRRIKTEVLVQMQGVGNNDDKVLVLAATNTPYALDQAIRRRFDKRIYIPLPEVKARQHMFKVHLGDTPHNLTESDFEELACRTEGFSGSDIAVCVKDVLFEPVRKTQDAMFFRKVSTEEGEMWMPCGPRQAGAVQTTMQELAAEGLAAKILPPPIAKADFDKVIARQRPTVSKSDLEVHERFTKEFGEDG*

Protein Length: 440

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGATTTTATTCTTCGTTCCGTCTGTGGACTTATCCTTTTTCCCTTCCATGATGTGAAAAACTCATTGGTGCCGGTTCCACGCCCATATAGCTTCCGTGCTTTTCTCTCATCAGTCAAGCTGGAAGAATCTTTACCGTCTGCTGCCCTTTTCTTAATTATTGAAGGCGATCAAGTACAGAGGAAATCCTTTCTTATGCATTGAAGGTCCATGCAGTCAACTCTTTTGTTGCATTCAAAGAAATTCAGAGTATAGCTGAGATGGGTATCTCAGGGCTTTGATTTTCATAGAGTTACAGGCCTCGTGGGCACTTTGGTATCATAGGATTATGCGGTGAAAACCCAGTAGGGATAATTGTTTGATTGGGATATCCCTGTTCTTCATGTATTCTGCTCCACCAGACGAAACACCCAGTGCTTATACACATAGGAATTAGTAGCAGCA_-_ATGTATAGCAATTTCAAGGAACAGGCCATAGAGTATGTTAGACAGGCAGTGAAAGAAGATAATGCCGGGAATTATGCCAAGGCCTTTCCTCTTTACATGAATGCCCTTGAATACTTCAAAACTCATCTGAAGTATGAGAAGAACCCCAAGATTAAAGAGGCCATTACACAGAAGTTTACTGAGTATTTGCGAAGGGCGGAGGAAATCCGCGCTGTGTTAGACGATGGAGCTAGTGCAGGGCCTGCTGCAAATGGTGATGCAGCTGTTGTGACCAGAGCGAAGACCAAGCCCGGCAACAAGGACGGGGATGGAGATGGAGAGGATCCTGAGCAAACGAAATTGCGTGCGGGCCTCAATTCGGCCATTATTCGCGAGAAGCCTAACGTGAAATGGAGTGATGTGTCAGGGCTTGAAAGTGCCAAACAGGCTTTGCAAGAGGCAGTTATCCTTCCTGTAAAATTTCCCCAATTTTTCACAGGGAGACGAAAGCCCTGGAAAGCTTTTCTTTTATATGGACCTCCTGGAACTGGAAAGTCATACTTGGCAAAAGCTGTTGCGACCGAAGCAGATTCAACGTTTTTCAGTATTTCTTCTTCAGACCTTGTTTCAAAATGGATGGGTGAAAGTGAGAAACTTGTTGCAAATCTATTTCAGATGGCCCGTGATTCTGCACCTTCTATTATATTCATTGATGAAATAGATTCTTTATGTGGCACCCGTGGAGAAAGTAATGAGAGTGAGGCTTCTCGACGAATAAAAACAGAAGTTCTTGTACAGATGCAGGGTGTAGGAAACAATGATGATAAAGTTCTTGTTCTGGCTGCCACCAACACTCCATATGCATTGGATCAGGCAATTCGGCGTCGGTTTGACAAAAGAATTTACATCCCACTACCAGAGGTCAAGGCAAGGCAGCATATGTTCAAGGTCCATTTAGGTGACACACCCCACAACTTAACTGAGAGCGATTTTGAGGAACTGGCATGCAGGACAGAGGGCTTTTCTGGATCTGATATAGCTGTCTGTGTTAAAGATGTACTCTTTGAACCTGTTCGTAAAACTCAAGATGCCATGTTCTTCAGAAAGGTTTCCACTGAGGAAGGGGAGATGTGGATGCCATGTGGTCCTAGGCAAGCTGGTGCTGTGCAGACAACCATGCAAGAACTTGCAGCAGAAGGCTTAGCGGCCAAGATTCTGCCACCACCAATTGCAAAAGCAGATTTTGATAAAGTTATCGCAAGGCAAAGGCCAACTGTTAGCAAAAGCGACCTTGAGGTGCATGAGAGATTCACGAAGGAGTTTGGAGAAGACGGCTGA___CAAATTTCAGTCTAATTGTATATGAATGCAGGAAAAGGGGCTCCAGCGTTTTGGGTAAAAATGGTTTCATTGCAACGATGTTATTGAATCTGGTGTTCTACTTCTTACGAGGAAAATCTTGCCCATTATGGGAAAAA

Fln Alignment:

sp_v1.1_unigene29415___MYSNFKEQAIEYVRQAVKEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLXXXXXXXXXXXXXXXVVTRAKTKPGNK-DGDGDGEDPEQTKLRAGLNSAIIREKPNVKWSDVSGLESAKQALQEAVILPVKFPQFFTGRRKPWKAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMARDSAPSIIFIDEIDSLCGTRGESNESEASRRIKTEVLVQMQGVGNNDDKVLVLAATNTPYALDQAIRRRFDKRIYIPLPEVKARQHMFKVHLGDTPHNLTESDFEELACRTEGFSGSDIAVCVKDVLFEPVRKTQDAMFFRKVSTEEGEMWMPCGPRQAGAVQTTMQELAAEGXXXXXXXXXXXXXDFDKVIARQRPTVSKSDLEVHERFTKEFGEDG
A9P2N1_______________MYSNFKEQAIEYVRQAVQEDNAGNYAKAFPLYMNALEYFRTHLKYEKNPKIKEAITQKFTEYLRRAEEIRVVLDEGVGSRPSANGDAAVATKPKSKPGAKGDGDGDGEDPEQAKLRSGLNSAIIREKPNVKWTDVAGLESAKQALQEAVILPVKFPQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPNNLTEGDFEDLARRTDGFSGSDISVCVKDVLFEPVRKTQDAMFFSKVSTKDGEMWMPCGPRQPGAVQTTMQELAVKGLASQILPPPISKADFDKVLARQRPTVSKHDLEVQERFTKEFGEEG

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
501	25	75			0.996473
598	80			20	0.995493
599		80	20		0.995493
600			20	80	0.995493
601		80	20		0.995493
626	83			16	0.994512
628	83		16		0.994512
629			16	83	0.994512
946	12			87	0.992554
948			12	87	0.992554
949			12	87	0.992554
950			12	87	0.992554
1133		10		90	0.90298
1160			20	80	0.999996
1161	80		20		0.999996
1196	22	77			0.999999
1211		11		88	0.923564
1242		12	87		0.992554
1243	87			12	0.992554
1245	11		88		0.923564
1247			11	88	0.923564
1248		88	11		0.923564
1249			11	88	0.923564
1529		16		83	0.994512
1572	83			16	0.994512
1660	80		20		0.995493
1731			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain