SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29380

Length: 1227 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29380

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Oligopeptide transporter OPT family n=1 Tax=Populus trichocarpa RepID=B9GXV8_POPTR	-	-	51%
FL-Next	sp=Oligopeptide transporter 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	46%
Blast2go	oligopeptide transporter opt family	-	-	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9T095

Fln msg: Distance to subject end: 425 aas, your sequence is shorter than subject: 331 - 736

Fln protein: MSSIHHLGNAVGDPKKTTKNEKEISTKEDFDDQSLIEQLALTMPTTDHPSILVVTLRMWVLRIISCVLHSFLNQFFGQQEGVLTESIAIQYKRACSHHNLCECRSNRCICNFHGQCCHNFLQEEPEIFRFFTRCHDNPDVRVWMGRGLPKISSGTCYHVVACKPCSSFSVQERTLISYD*IK*IPFTCGVFEMFDEF*VISYKRYSVSML*LQSPS*E*GEAQRRPYTKPIFHDIPFM*FFLLCNPWLSVSMVTSLSCICWASRNFVLAQQLGSGL*SLGISNLGIDWCTISFYLGSHLPSRWFSIANRAVGFVLIMYVITPLTYWLNLYH

Protein Length: 332

Fln nts: ATGGGATACGCAGACTCCAAAGTATGCCATAACCGATTCATGGGTTTGGCCGGATGAAGCGATAATCGTCTCACACATAATTACACGTCTCTTACTCAGACTCCACAGTGTACATAGCCTTCTCTTTTACTCGGTTTGGCATTGATATATGATAGTAATCATAGAGATTTAGTACCGGAGGCCACTGTCTCATTAAATTTTCTGTAATAGAAAGTTCAGTTCTGTAACGGAA_-_ATGAGTAGCATACATCATCTGGGAAATGCAGTGGGAGATCCGAAAAAAACTACTAAGAATGAAAAAGAGATTTCTACAAAAGAAGATTTCGATGACCAGTCCTTAATCGAGCAGTTGGCTCTCACTATGCCTACAACTGACCATCCAAGCATTCTCGTCGTAACTTTGAGGATGTGGGTTCTCAGAATTATTTCTTGCGTTCTACACTCGTTTCTAAATCAGTTCTTTGGGCAACAAGAAGGAGTTCTCACTGAATCCATAGCCATTCAATACAAAAGAGCATGTTCTCATCACAATCTTTGTGAATGCAGAAGCAACAGGTGTATATGCAATTTCCATGGTCAATGCTGTCATAATTTTCTACAAGAAGAACCTGAGATTTTTCGTTTCTTTACTCGTTGTCATGACAACCCAGATGTTCGGGTATGGATGGGAAGGGGTCTTCCGAAAATATCTAGTGGAACGTGCTACCATGTGGTGGCATGCAAACCTTGTTCAAGTTTCTCTGTTCAGGAAAGGACTCTCATTTCATATGATTAGATAAAATGAATTCCTTTTACATGTGGGGTTTTTGAGATGTTTGATGAGTTTTGAGTGATTTCTTATAAGCGTTATTCTGTTTCAATGCTTTAGTTGCAGAGCCCTTCATGAGAATGAGGAGAGGCCCAAAGGAGGCCTTACACGAAACCAATTTTTCATGATATCCCTTTCATGTAGTTTTTCCTATTATGTAATCCCTGGTTATCTGTTTCCATGGTGACATCCCTATCATGTATCTGTTGGGCCTCTCGAAATTTTGTCCTTGCACAACAATTGGGTTCAGGACTATAGAGCCTTGGCATCAGCAACCTAGGGATAGATTGGTGCACCATTTCTTTTTACCTCGGAAGCCATCTTCCTAGTCGTTGGTTTTCAATAGCCAACAGGGCTGTCGGATTTGTGCTTATAATGTATGTGATAACGCCATTAACATACTGGCTCAACTTGTATCATGC

Fln Alignment:

sp_v1.1_unigene29380___EDFDDQSLIEQLALTMPTTDHPSILVVTLRMWVLRIISCVLHSFLNQFF
Q9T095_______________DDDDDRCVVPEVELTVPKTDDSTLPVLTFRMWVLGIGACIVLSFINQFF

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
21	66		33		0.997454
22	66		33		0.997454
24			33	66	0.997454
102	25	75			0.996479
104		75	25		0.996475
105		75	25		0.996475
106	80		20		0.995494
108		60	40		1.0
109	80		20		0.995493
111			20	80	0.995493
210		50		50	1.0
256	40		60		1.0
776	83		16		0.994512
777			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain