SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29366

Length: 2252 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene29366
CGTCGTGACCTTGGCTGTCACTCATCCTCCTCCTCTCGCGCCGTCGCTGACCCTCACCGCCCCACACGTCCTTCCTCCTCAGCCCTTCTTCAATCCATGGGACGCTCCGCCTCCCCCGGTTCCGCCTCCAGCAGACGCAGATTTGCAGAAACGCATTGATAAATTGGCCGAATACGCCGCTAAGAATGGCCCTGATTTCGAAAAAATGATCAGGGAAAAGCAGCAGGACAACCCTGCTTACAACTTCCTCTTTGGGGCCGAAGGCCACGGGTATTACAGATACAAGCTCTGGCTATGCACTCGCCCAATCACTGCTAACTTCAGCCATGGTATGGGTAGCATGAATCCGGGTTTGACATCCATGGGTTCTTTGAATTCTCCACTGCAAACCCTCAATCCTCCCCTAAACCCTGGATTGAGCTCGGCTTTGAACCCTGTTCTGAGCAATTCACTATTGGGTGCAGCACCGCCTCTTCATCATTCTGGGCCGTTTCCTGCATTCTATGATCAGCATCCGCAGCCGCCGCCGCAGCATTCTCAGCCCCTTTACTCTCAATCTCGCTCGGATTACGAGCCCATGACAAGGTCATTCAAAGGGCTTTCTGGACCGCTTCCTTCTGATGTTGCGGCCGAGCTTTATAACGTGCTCAACAATCTTACAGGGACGAAGGAGTCAATTAAGGGCGCGAAGACCTGGTTTATGCAGAGGTCCCCATTTGCGCCGGCTCTAGCGGAGGCTTTGAAGGATAGGGTTATGGCTCTGGACGATGCCGAAAAACAGTTGCATATCATCTATTTGGCAAATGACATCCTTTTTGACAGTTTGCAGCGTCGTATCAATCCAAAGGAGCTAGACAATGAGGCTCTTGCTTTTCAGCCTGTATTGGGAAACATGCTTGCGAGGATTTATCACAATCCTCAAAACAAAGATGCAAATCAATCACGTCTGCAAAAGATACTACAGTTTTGGGCTTCCAAGGAAGTTTATGATACTGAAACTATCTATAGTTTAGAAGGTGATATGTTAGCTGGCCCACCGGCTCCAGCTGGATCTGTAAAAGAGTCTTCTCTACAAGAGCCGTCTGTTGGTTCGTCAGGAATCTTACAATCATCCACCCAAAATCCTCCTCAATGGCCATTGGATTTACAAAGAAACTCCCAGCCATCAACAGAACAGGAACAGCAAGATAAAGCTATACCGCCTGTTTCAACATCACAATTCTTTGGATCAAGTACACAGTTTAATTCAACAGCATCTCAGATCTTTGCAACCAATACAGTTTCCTCTATGCAATATCCATCAATGGCTCAGTCTTTTCATGGATCACTACCTACTCCTACCCCTGCAGCTTCTCAGTTGACTCCACAAGTGCCAAATCTATCTGCTGCTAGAGGTGGGGATCAGCCTCCATATCCATTGTTTCCTCCAGGGCTTATACCAGGAATGGTTCGAAAAATGCAAATAGGAAGTGGGGTTCCTTACTCTCCTTTGAGCCCTCTGGATATCCCTACAGTAATTCCTCCGTCTACATTATCTTCATCGTATATTCTTGAAAGAGTTTCAAAGTTTTTCAAAGAGATAGGTGAAGTCAATCCTTTAGAAAATCAGTCAACTTTATCTGACTCAATAGAGGATGATGAAAGGGAGCAGCCAAGCCGTACAGGTGGTGCTTGTATTCCACCTCCACCTAATTTGCAGGTTGATGCAGATACTGGTACACTTCCAGATGGAAGTGTTGAACACAAGCCAGGATCAACTAGTACAGGAAGGTTGGGTCTTGGAGCTACTGCTGATCCTAATGAAATGAGCCAGTATGATGATGTTTATTCTTCATACAGGAAGCAAAGGAGCTCAAGTTATCATACATCAATGAGTGCCAGAGCTTCAGCAAGATAGTTGAAGTTTATTATCCTTTTTACAGGTACTGGCATACTGCTTGTGTAATGCCAACAGTTTGTAGAAATTTTCGAAGTGCTCCATAACATCAATATTTTATTATTTTCTATAGAAACACTGGTTAACTTCACAGGTTGTAACAGTTATCCATCGTTACAAATGGATTATACAGTGCAAGACCTAAATTTTTCCTTTGAAACAGTTTTGTAGTAGGTTAAACAGAAAATTGCAAAATTTCTTAAATTTAAAATGATGAAGGATTTTGACAGATGAACATTATTCCATACGTAGTTGACTCGACTTCATGCTTTGTCTAAAAACGATTTGTTAGCATTTAAATAATTGAGTTGTCAAC

Ace file of the UniGene sp_v1.1_unigene29366 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	61%
Blast2go	protein	-	-	66%

Source	InterPros	Term	Type	Identity
Blast2go	SWAP/Surp	IPR000061	-	66%
Blast2go	RNA polymerase II, large subunit, CTD	IPR006569	-	66%
Blast2go	RNA polymerase II-binding domain	IPR006903	-	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6H1T4

Fln msg: your sequence is shorter than subject: 632 - 692

Fln protein: VVTLAVTHPPPLAPSLTLTAPHVLPPQPFFNPWDAPPPPVPPPADADLQKRIDKLAEYAAKNGPDFEKMIREKQQDNPAYNFLFGAEGHGYYRYKLWLCTRPITANFSHGMGSMNPGLTSMGSLNSPLQTLNPPLNPGLSSALNPVLSNSLLGAAPPLHHSGPFPAFYDQHPQPPPQHSQPLYSQSRSDYEPMTRSFKGLSGPLPSDVAAELYNVLNNLTGTKESIKGAKTWFMQRSPFAPALAEALKDRVMALDDAEKQLHIIYLANDILFDSLQRRINPKELDNEALAFQPVLGNMLARIYHNPQNKDANQSRLQKILQFWASKEVYDTETIYSLEGDMLAGPPAPAGSVKESSLQEPSVGSSGILQSSTQNPPQWPLDLQRNSQPSTEQEQQDKAIPPVSTSQFFGSSTQFNSTASQIFATNTVSSMQYPSMAQSFHGSLPTPTPAASQLTPQVPNLSAARGGDQPPYPLFPPGLIPGMVRKMQIGSGVPYSPLSPLDIPTVIPPSTLSSSYILERVSKFFKEIGEVNPLENQSTLSDSIEDDEREQPSRTGGACIPPPPNLQVDADTGTLPDGSVEHKPGSTSTGRLGLGATADPNEMSQYDDVYSSYRKQRSSSYHTSMSARASAR*

Protein Length: 633

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTCCTCCTCTCGCGCCGTCGCTGACCCTCACCGCCCCACACGTCCTTCCTCCTCAGCCCTTCTTCAATCCATGGGACGCTCCGCCTCCCCCGGTTCCGCCTCCAGCAGACGCAGATTTGCAGAAACGCATTGATAAATTGGCCGAATACGCCGCTAAGAATGGCCCTGATTTCGAAAAAATGATCAGGGAAAAGCAGCAGGACAACCCTGCTTACAACTTCCTCTTTGGGGCCGAAGGCCACGGGTATTACAGATACAAGCTCTGGCTATGCACTCGCCCAATCACTGCTAACTTCAGCCATGGTATGGGTAGCATGAATCCGGGTTTGACATCCATGGGTTCTTTGAATTCTCCACTGCAAACCCTCAATCCTCCCCTAAACCCTGGATTGAGCTCGGCTTTGAACCCTGTTCTGAGCAATTCACTATTGGGTGCAGCACCGCCTCTTCATCATTCTGGGCCGTTTCCTGCATTCTATGATCAGCATCCGCAGCCGCCGCCGCAGCATTCTCAGCCCCTTTACTCTCAATCTCGCTCGGATTACGAGCCCATGACAAGGTCATTCAAAGGGCTTTCTGGACCGCTTCCTTCTGATGTTGCGGCCGAGCTTTATAACGTGCTCAACAATCTTACAGGGACGAAGGAGTCAATTAAGGGCGCGAAGACCTGGTTTATGCAGAGGTCCCCATTTGCGCCGGCTCTAGCGGAGGCTTTGAAGGATAGGGTTATGGCTCTGGACGATGCCGAAAAACAGTTGCATATCATCTATTTGGCAAATGACATCCTTTTTGACAGTTTGCAGCGTCGTATCAATCCAAAGGAGCTAGACAATGAGGCTCTTGCTTTTCAGCCTGTATTGGGAAACATGCTTGCGAGGATTTATCACAATCCTCAAAACAAAGATGCAAATCAATCACGTCTGCAAAAGATACTACAGTTTTGGGCTTCCAAGGAAGTTTATGATACTGAAACTATCTATAGTTTAGAAGGTGATATGTTAGCTGGCCCACCGGCTCCAGCTGGATCTGTAAAAGAGTCTTCTCTACAAGAGCCGTCTGTTGGTTCGTCAGGAATCTTACAATCATCCACCCAAAATCCTCCTCAATGGCCATTGGATTTACAAAGAAACTCCCAGCCATCAACAGAACAGGAACAGCAAGATAAAGCTATACCGCCTGTTTCAACATCACAATTCTTTGGATCAAGTACACAGTTTAATTCAACAGCATCTCAGATCTTTGCAACCAATACAGTTTCCTCTATGCAATATCCATCAATGGCTCAGTCTTTTCATGGATCACTACCTACTCCTACCCCTGCAGCTTCTCAGTTGACTCCACAAGTGCCAAATCTATCTGCTGCTAGAGGTGGGGATCAGCCTCCATATCCATTGTTTCCTCCAGGGCTTATACCAGGAATGGTTCGAAAAATGCAAATAGGAAGTGGGGTTCCTTACTCTCCTTTGAGCCCTCTGGATATCCCTACAGTAATTCCTCCGTCTACATTATCTTCATCGTATATTCTTGAAAGAGTTTCAAAGTTTTTCAAAGAGATAGGTGAAGTCAATCCTTTAGAAAATCAGTCAACTTTATCTGACTCAATAGAGGATGATGAAAGGGAGCAGCCAAGCCGTACAGGTGGTGCTTGTATTCCACCTCCACCTAATTTGCAGGTTGATGCAGATACTGGTACACTTCCAGATGGAAGTGTTGAACACAAGCCAGGATCAACTAGTACAGGAAGGTTGGGTCTTGGAGCTACTGCTGATCCTAATGAAATGAGCCAGTATGATGATGTTTATTCTTCATACAGGAAGCAAAGGAGCTCAAGTTATCATACATCAATGAGTGCCAGAGCTTCAGCAAGATAG___TTGAAGTTTATTATCCTTTTTACAGGTACTGGCATACTGCTTGTGTAATGCCAACAGTTTGTAGAAATTTTCGAAGTGCTCCATAACATCAATATTTTATTATTTTCTATAGAAACACTGGTTAACTTCACAGGTTGTAACAGTTATCCATCGTTACAAATGGATTATACAGTGCAAGACCTAAATTTTTCCTTTGAAACAGTTTTGTAGTAGGTTAAACAGAAAATTGCAAAATTTCTTAAATTTAAAATGATGAAGGATTTTGACAGATGAACATTATTCCATACGTAGTTGACTCGACTTCATGCTTTGTCTAAAAACGATTTGTTAGCATTTAAATAATTGAGTTGTCAAC

Fln Alignment:

sp_v1.1_unigene29366___LQKRIDKLAEYAAKNGPDFEKMIREKQQDNPAYNFLFGAEGHGYYRYKLWLCTRPITANFSHGMGSMNPGLTSMGSLNSPLQTLNPPLNPGLSS--ALNPVLSNSLLGAAPPLHHSGPFPAFYDXXXXXXXXXXXXXXXXSRSDYEPMTRSFKGLSGPLPSDVAAELYNVLNNLTGTKESIKGAKTWFMQRSPFAPALAEALKDRVMALDDAEKQLHIIYLANDILFDSLQRRINPKELDNEALAFQPVLGNMLARIYHNPQNKDANQSRLQKILQFWASKEVYDTETIYSLEGDMLAGPPAPAGSVKESSLQ----EPSVGSSGILQSSTQNPPQWPLDLQRNSQPSTEQEQQDKAIPPVXXXXXXXXXXXXXXTASQIFATNTVSSMQYPSMAQSFHGSLPTPT---PAASQLTPQVPNLSAARXXXXXXXXXXXXXXXXGMVRKMQIGSGVPYSPLSPLDIPTVIPPSTLSSSYILERVSKFFKEIGEVNPLENQSTLSDSIEDD---EREQPSRTGGACIPPPPNLQVDADTGTLPDGSVEHKPGSTSTGRLGLGATADPNEMSQYDDVXXXXXXXXXXXYHTSMSARASAR
F6H1T4_______________LHKRIDKLVEYAAKNGPEFEVMIREKQQDNPAYSFLFGGEGHNYYRYKLWLSTRSSGGPFNSPFPP-----SSIPMMHSPM---NPMMNPSLNAPPAAAAGASASMLGT--PQMHQPPYLPFYDQQQQQHQHPQPFLGHG-RPDFDPSSKSFKGLSGPLPSDVAMELSNVLNNLTGTKESIKGAKIWFMQRSPFAPALAEALRDRVFAVDDSERQLHIIYLANDILFDSLQRRINPHELDNEALAFKPVLGSMLARIYHNPQNKEENQSRLQKILQFWASKEVYDHDTIYGLEGEMIGGPPSNSFSGPHKELSAVPVDPS-AVSGLPQSAHHNIPHWQPEKPCSMPSLLEQEQPDKQMPSL--------AAMPPSLATQQFLPNAVP-------AGPFLGSMPIPSSVQPANQQPALHLPT-AAGLGEKLPPYPLFPPGLIPGMVRKMQIGSGVPYSPMSPLDIPTVIPPSNVSPSEILERVSKFFKEIGEVNPSEGPMEPSDSKDEDDEYERDSPVRKGGACIPPPPNLQVDPETGTYADGSVERKPGSSGSARLGLGATANPNEVSQYDDVYTSYRKQRSTNYHSSMSARAGTR

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
1699		87		12	0.992554
1771		87		12	0.992554
1845			16	83	0.999991
1846	16		83		0.999991
1847		83	16		0.999991
1849		75	16		0.99999
1851		16	83		0.999991
1854	83	16			0.999991
1857	18		81		0.999994
1865	81	18			0.999994
1867	18	81			0.999994
2053	14			85	0.999981
2054	85		14		0.999981
2055	85			14	0.999981
2062		14	85		0.999981
2063	14		85		0.999981
2064	14			85	0.999981
2065			14	85	0.999981
2069	14	85			0.999981
2070		14		85	0.999981
2072	15	84			0.999986
2073		15		84	0.999986
2184			88	11	0.923564
2187			88	11	0.923564
2191		88		11	0.923564
2192	11		88		0.923564
2193	11		11	77	0.968132
2198	11	88			0.923564
2202			90	10	0.903175
2205		10		90	0.903175
2206		10	90		0.903076
2208	55	22		22	0.999999
2211	62	12	25		1.0
2212			66	33	1.0
2214	37		62		1.0
2215		85	14		0.993533
2217	28			71	1.0
2219	71	28			1.0
2220		28	57		1.0
2222	28	14	57		1.0
2226			85	14	0.993533
2227		28	28		1.0
2228		25	50	25	1.0
2229	75	25			1.0
2230	85		14		0.993533
2231		25	62	12	1.0
2233	75			25	1.0
2235	12	50		37	1.0
2236	25		75		1.0
2237		50		50	1.0
2238		20	80		0.995493
2239	50			50	1.0
2240	16	33	33		1.0
2243	33		33	33	0.997753
2245	25		50		0.995533
2246	50		50		1.0
2247		50		50	1.0
2248		33	66		0.997452
2249	75		25		0.996474
2250	25	25	50		0.995551
2251			75	25	0.99649
2253	33		33	33	0.997751
2260	33	66			0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain