SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29363

Length: 2074 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene29363
GGTTCATGGAATGTGCTCAGACGCTTGGCAACCACAGCTTGTTGAAACTTTAGCTAACAATGCTGTTGATCTTGTTGCCTGTGGTGAATATCACACTTGTGCAGTTACCATGACTGGTGAGTTGTACACATGGGGCGATGGTAGCCGTCACCTTGGTCTCCTAGGACATGGGAATGATGTGAGTCATTGGATACCAAAGAAGATATCTGGTTCTCTAGATGGAATCCAAGTTTCTTCCATTGCTTGTGGACCTTGGCACACTGCATTAGTAAGTTCGACTGGGCAGCTGTTTACATTTGGGGATGGAACCTTTGGAGTATTGGGGCATGGAGATTGTAAAAGTGTGTCATACCCCAAGGAAGTAGAGTCTCTGAAGGGTTTAAGAGCTGTTGGTGTTGCTTGTGGTGTGTGGCATACAGCTGCGATTGTGGAAGTCATGGTAGCACATTCTAGTGCTGGTTGTTGCTCAGGAAAATTGTTCACATGGGGTGATGGAGATAAAGGTCGGCTTGGACATGGAGACAGAGAGACAAAGCTTGTACCAACTTGTGTGCCAACACTCATAGATCATAACTTCTGGCAAATTGCATGTGGGCATAGTCTTACTGTAGGCTTGACGACAGCAGGTCAGGTTTTTACCATGGGTAGTATTGTTTATGGTCAGCTTGGAAACCCCAAATCTGATGGCAAGCAGCCTTGTCTGGTAGAAGGAAAGCTGGCAAATGAAACTGTCGAACAGATAGCTTGTGGAGCATATCATGTAGCGGCTCTGACATCTAAAAATGAGGTTTATACTTGGGGAAAAGGAGCCAATGGAAGATTGGGTCATGGAGATGTGGAAGATCGTAAGACACCTACACTGGTTGAGGCGTTGAAAGACAAGCATGTTAAGGACATTGCATGTGGCTCCACTTTTACGACAGCTATATGTCTTCACAAGTGGGTATCAGGTGCAGATCAATCAGTATGTTCAGGATGCAGGCAGTCATTTGGATTCACCAGAAAGCGTCACAACTGCTATAATTGTGGATTGGTACACTGCCATTCTTGTAGTTCTAAAAAGGCTTTGAGAGCTGCACTTGCTCCCAATCCAAATAAACCATATCGTGTATGTGATTCTTGTTTTATCAAATTGAAGAAAGCATTGGAACTAGCTATGGTATCAAATAACAATAAAAGAAATATGATACCAAGGCGTCCAAATGACAACATAGATAGATCAGATAGGCCAGAAACAAAAAATTCAAAAACACAGGGGCTTCCTCCAGAAGCAAAATCTCAAACTAAGCGTGGTAAGAAGTCTGATACATCAGCTTCAAATCGAGCTTCCCTAGGCACTGCTTTGCCACATTTAAAGGATATTAAGTTTTGGGTTCAGTTGATCCACAACTATCAAAAACACTTCTTTCCCTTCCACAGTCTAGAAACACTTCACGAGCTGTCTCTCCATTCTCAAGGAGACCCAGTCCACCTCGTTCTGCAACACCTACTCCTACTATGGCAGGCCTTGCTTCTTCCAAAACTCTTGTTGATGGCCTTACGAAGACAAATGCACTTATGACTCAGGAGATTATGAATTTGCGGGACCAGGTTGGGAACTTGGCACAGAGATGCAGACAACAAGAAGCAGAGTTACAACAGACAGCAAAGCAAGCACAAGAGGCTATGTCTTTGGCTGCTGCAGAATCTCGCAAATGTAAAGCTGCAAAGGAGGCAATCAAATCCCTTAGTGCCCAGCTGAACTATATGGCTGAGAGATTACCCGCAGGAGTGTATGAAAATGATAGGCAAAGGCCAGCTTATCCTCGTGCTCCAAATGGTATTCAGTATCCAATTGTTTCAAATATGGACCAGACAGTTGGGAAGGAAAGTGAACTGCCAAATACAGCAGAGCATTTACCTGCTATTTCTGTTTCATATGCAACTGGTGATGGTGAGACAGGCAGTGTCGTTGAATCACATCCTTGGCAAGATAGTAAATTTGCTACATCTGAAGGTCCTATGGAAGTGCAAGGTATAAGGTCTTCTAGTGGTGAAGAAAGCGTGTCTTTGACCCCCAGGATATGGAGAATTT

Ace file of the UniGene sp_v1.1_unigene29363 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ran GTPase binding protein, putative n=1 Tax=Ricinus communis RepID=B9SJF7_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	80%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, FYVE-type	IPR000306	-	80%
Blast2go	Regulator of chromosome condensation, RCC1	IPR000408	-	80%
Blast2go	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	80%
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	80%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	80%
Blast2go	Zinc finger, FYVE-related	IPR017455	-	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNM4

Fln msg: your sequence is longer than subject: 520 - 286

Fln protein: VHGMCSDAWQPQLVETLANNAVDLVACGEYHTCAVTMTGELYTWGDGSRHLGLLGHGNDVSHWIPKKISGSLDGIQVSSIACGPWHTALVSSTGQLFTFGDGTFGVLGHGDCKSVSYPKEVESLKGLRAVGVACGVWHTAAIVEVMVAHSSAGCCSGKLFTWGDGDKGRLGHGDRETKLVPTCVPTLIDHNFWQIACGHSLTVGLTTAGQVFTMGSIVYGQLGNPKSDGKQPCLVEGKLANETVEQIACGAYHVAALTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDKHVKDIACGSTFTTAICLHKWVSGADQSVCSGCRQSFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPNPNKPYRVCDSCFIKLKKALELAMVSNNNKRNMIPRRPNDNIDRSDRPETKNSKTQGLPPEAKSQTKRGKKSDTSASNRASLGTALPHLKDIKFWVQLIHNYQKHFFPFHSLETLHELSLHSQGDPVHLVLQHLLLLWQALLLPKLLLMALRRQMHL*

Protein Length: 521

Fln nts: GGTTCATGGAATGTGCTCAGACGCTTGGCAACCACAGCTTGTTGAAACTTTAGCTAACAATGCTGTTGATCTTGTTGCCTGTGGTGAATATCACACTTGTGCAGTTACCATGACTGGTGAGTTGTACACATGGGGCGATGGTAGCCGTCACCTTGGTCTCCTAGGACATGGGAATGATGTGAGTCATTGGATACCAAAGAAGATATCTGGTTCTCTAGATGGAATCCAAGTTTCTTCCATTGCTTGTGGACCTTGGCACACTGCATTAGTAAGTTCGACTGGGCAGCTGTTTACATTTGGGGATGGAACCTTTGGAGTATTGGGGCATGGAGATTGTAAAAGTGTGTCATACCCCAAGGAAGTAGAGTCTCTGAAGGGTTTAAGAGCTGTTGGTGTTGCTTGTGGTGTGTGGCATACAGCTGCGATTGTGGAAGTCATGGTAGCACATTCTAGTGCTGGTTGTTGCTCAGGAAAATTGTTCACATGGGGTGATGGAGATAAAGGTCGGCTTGGACATGGAGACAGAGAGACAAAGCTTGTACCAACTTGTGTGCCAACACTCATAGATCATAACTTCTGGCAAATTGCATGTGGGCATAGTCTTACTGTAGGCTTGACGACAGCAGGTCAGGTTTTTACCATGGGTAGTATTGTTTATGGTCAGCTTGGAAACCCCAAATCTGATGGCAAGCAGCCTTGTCTGGTAGAAGGAAAGCTGGCAAATGAAACTGTCGAACAGATAGCTTGTGGAGCATATCATGTAGCGGCTCTGACATCTAAAAATGAGGTTTATACTTGGGGAAAAGGAGCCAATGGAAGATTGGGTCATGGAGATGTGGAAGATCGTAAGACACCTACACTGGTTGAGGCGTTGAAAGACAAGCATGTTAAGGACATTGCATGTGGCTCCACTTTTACGACAGCTATATGTCTTCACAAGTGGGTATCAGGTGCAGATCAATCAGTATGTTCAGGATGCAGGCAGTCATTTGGATTCACCAGAAAGCGTCACAACTGCTATAATTGTGGATTGGTACACTGCCATTCTTGTAGTTCTAAAAAGGCTTTGAGAGCTGCACTTGCTCCCAATCCAAATAAACCATATCGTGTATGTGATTCTTGTTTTATCAAATTGAAGAAAGCATTGGAACTAGCTATGGTATCAAATAACAATAAAAGAAATATGATACCAAGGCGTCCAAATGACAACATAGATAGATCAGATAGGCCAGAAACAAAAAATTCAAAAACACAGGGGCTTCCTCCAGAAGCAAAATCTCAAACTAAGCGTGGTAAGAAGTCTGATACATCAGCTTCAAATCGAGCTTCCCTAGGCACTGCTTTGCCACATTTAAAGGATATTAAGTTTTGGGTTCAGTTGATCCACAACTATCAAAAACACTTCTTTCCCTTCCACAGTCTAGAAACACTTCACGAGCTGTCTCTCCATTCTCAAGGAGACCCAGTCCACCTCGTTCTGCAACACCTACTCCTACTATGGCAGGCCTTGCTTCTTCCAAAACTCTTGTTGATGGCCTTACGAAGACAAATGCACTTATGA___CTCAGGAGATTATGAATTTGCGGGACCAGGTTGGGAACTTGGCACAGAGATGCAGACAACAAGAAGCAGAGTTACAACAGACAGCAAAGCAAGCACAAGAGGCTATGTCTTTGGCTGCTGCAGAATCTCGCAAATGTAAAGCTGCAAAGGAGGCAATCAAATCCCTTAGTGCCCAGCTGAACTATATGGCTGAGAGATTACCCGCAGGAGTGTATGAAAATGATAGGCAAAGGCCAGCTTATCCTCGTGCTCCAAATGGTATTCAGTATCCAATTGTTTCAAATATGGACCAGACAGTTGGGAAGGAAAGTGAACTGCCAAATACAGCAGAGCATTTACCTGCTATTTCTGTTTCATATGCAACTGGTGATGGTGAGACAGGCAGTGTCGTTGAATCACATCCTTGGCAAGATAGTAAATTTGCTACATCTGAAGGTCCTATGGAAGTGCAAGGTATAAGGTCTTCTAGTGGTGAAGAAAGCGTGTCTTTGACCCCCAGGATATGGAGAATTT

Fln Alignment:

sp_v1.1_unigene29363___HGMCSDAWQPQLVETLANNAVDLVACGEYHTCAVTMTG-ELYTWGDGSRHLGLLGHGNDVSHWIPKKISGSLDGIQVSSIACGPWHTALVSSTGQLFTFGDGTFGVLGHGDCKSVSYPKEVESLKGLRAVGVACGVWHTAAIVEVMVAHSSAGCCSGKLFTWGDGDKGRLGHGDRETKLVPTCVPTL
B8LNM4_______________HGDAEDRPMPTFVSALDGCEITSVICGADHTTAYSDSRLVVYSWGWGD--FGRLGHGNSSDLFIPHAIK-TLQGLQIKQIACGDSHCLAVTINGEVQSWGRNQNGQLGVGDNIDHSFPQRVKLPAEEEVVQVSCGWRHTVAITG-----------KSNVFSWGRGTSGQLGHGDILDRNMPVLIEAL

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
707		66		33	0.997452
1086	16		83		0.994512
1091	83	16			0.994512
1092	83	16			0.994512
1093		16		83	0.994512
1094		83	16		0.994512
1095		83		16	0.994512
1096	83	16			0.994512
1098	83	16			0.994512
1100		16	83		0.994512
1107	16	83			0.994512
1108	16			83	0.994512
1532	33			66	0.997452
1533		33		66	0.997452
1534	33		66		0.997452
1542	66		33		0.997452
1545		33		66	0.997452
1546	33		66		0.997452
1547		33	66		0.997452
1548			33	66	0.997452
1551	66		33		0.997452
1689	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain