SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29336

Length: 876 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29336

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	HSP21; HSP21 (HEAT SHOCK PROTEIN 21)	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	heat shock protein 21	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	response to high light intensity	GO:0009644	Biological Process	73%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	73%
Blast2go	response to heat	GO:0009408	Biological Process	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein Hsp20	IPR002068	-	0.0	73%
Blast2go	HSP20-like chaperone	IPR008978	-	0.0	73%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
14	66		33		1.0
145		90		10	0.903175
146			10	90	0.902989
147		90	10		0.90298
148			10	90	0.90298
397		87		12	0.992554
399	87		12		0.992554
400		87	12		0.992554
464		10		90	0.90298
487	90		10		0.90298
629	14		85		0.993533
633	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain