SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29301

Length: 2933 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene29301
CGTCGTGACCTTGGCTGTCACTCAATCAATACTCAACTTTGTCCTCAAAGTTTTGGGATCAATTATGTATCGTCGTGACCTTGGCTGTCACTCAACACTTTAGGTTTTTGAACAGCTGCAGGAACCTCCATGTAATTTTCAAGAAAAACATGTCCCATTGAACAGTGGTCTCAAAACCTGCTGGTCTTCAAATTCCCTGTACTCTTATAAATTTGTGTAGCTTGAAACATCTCCATAGTCAGTGCATTGCATTACTTTTGTGATTTACATATTTCTAATACAGGTCTCCAATGGCATCCCAAGTAGTTCATGGTACTCTTACTGCCACCATATTTGAAGCTAGGCACCTCAGTCATGGAGGCTTACCCAGGTTGCTGAGAAAGGTGGGGGAAGAAGTTAAGGAGCTTCTCCATCAAGATAAGCACAGTGGATTATATGCCACCATAGATATTGGTATTGCTAGAATTGCAAGAACCAGAGTTCTGTCCCGTGAACCTACAAACCCAATTTGGAACGAAACTTTTCACATACTCTGCGCCTACACATCGCCTTCTCTGGTTATCAGCGTTAAGAAGGGATTGGAAATCTCTGCACAAGTGGTTGGAAGAGCCAAGATCCCAATCTCAGAAATTCTCAGCGGCAAGGTCATCGAGGGCTGGTATGACTTATATAATGAAGACTTTTCCGAACAGCTGAAGAAATCTCAGATCCATGCCCGCCTCCAGTTCAAACAAGTCTCAGAAGATCCATATTGGGGTTCCGGGATTCGAGATCGAGACTTCCCAGGAGTCCAGCATGTGTATTTCAAGCAGAGGAAAGGATGCAGAGTCAATCTGTATCAGAATTCTCACTTATCAGAAAACTATCGTCCCAGGATCGAGCTAGGTCATGGTGAGGAGCGCGCCTTATACAGGCCTCCGAGACTGTGGGAGGAAGTGTACCAGTACATTGATGGAGCCGAGCAATTTATATACATTGCTGGATGGTCTGTAAATACCAAGATTACGCTTGTGAGGGACAAGGAAAGGATGATCCCTGGTGCAGAAACTGTGACATTGGGTGAACTTTTGAAGAAGAAAGCGGATCAGGGAGTAAGAGTTCTGGTCCTCATCTGGGAAGATAGAACGGCCGTGGAGCTTCTCAGAAACCAGGGACTCATGCAAACCCACTGTGACGAGACATTTGAATATTTCAAGGGCACCAATGTCTACTGCTTTCAATGTCCCAGAYACGCARACCGTTCGTTGAGTGCATTCCAAACCGTGGAGATTGCAGCAGAGTTTACCCATCACCAGAAGACTGTGTGCTTGGATGCCCGCGTCCATGGCTCTGAGAATCGCGAGGTCGTGAGCTTCGTTGGAGGAATTGATCTCTGCGATGGAAGGTATGATAACGAGATCCATCCATTGTTTAGGACTCTGGATACTGTTTACAGGGATGATTTTCATCAGAACAATTACAAGGGAACGGATCTTCGGCACGGAGGCCCTAGGGAGCCATGGCATGATGCCCATTCTAAGATCCAGGGCCCTGCTGCTTACGATGTGGTCACCAATTTTACTCAGCGCTGGACAAAACAGGCCGATCCCACACTTCTCCTAAATCTTGAGGATTTACCAGGCCTATTGCCGCCTGGAACAAATTTTGAAGGTCCGGAGACCTGGAATGTTCAGATCTTTAGGTCTATAGACGATGCTTCAGTGGTCGGATTCCCTGCAAATCCCTCCGAAGCGCCCGAGCTGGGTTTGATTACTGTAAAGGATCAAGTAATAGACAAAAGCATCCAGTGCGCCTATATCGAAGCCATTCGCCGAGCCAGAGACTTCATTTACATACAGAACCAGTACTTCTTTGGCAGTTGCGCTTCTTGGGACCGAGATCAGGACTGCGAATGTCTGCATCTGATACCAATTGAGATTGCGCTAAAGGTAGTGAGCAAGATCAGAGCCCGGGAGCGGTTCTCCGTGTATGTGCTGACCCCAATGTGGCCGGAGGGAATACCGGAGGGCGATACTGTGCAGGCAATCCTGCACTGGTTCAGGAACACCGCGCGCATGATGTATAAGATGATCGGCGAAGCACTCAGGGAAGAGGGCCTGGACCATGAGTACCGCCCGACTGATTATTTGAATTTCTTCTGCGTGGGGAACAGGGAGGTGAAGCTCCCGGGCGAATATGAACCTCCAGAAAGACCAGAAGAAGGGACCGATTACTGGAATGCGCAGATTCACAGGAGAACCATGATCTATGTCCATGCCAAGCTCATGATAGTGGATGATGAATATATTATCATAGGATCAGCGAACCTGAACCAGCGATCCATGGATGGAGCCAGAGACACAGAAATAGCCCAGGGTTGTTACCAGCCAGAGCACATCAACCAGCAGGGTCGCCGAGCTCGAGGGGAGATATTCGGATACCGAATGTCACTGTGGTATGAACATTTTGCGCATAAAAATGGAGGCCTGCGGCGTGAATATCTTCATCCAGAGAGTGTTGAATGCGTGAGGATGGTGCGCCGGATCTCTGAGAAAATTTGGGAGTCATTTGTTCGGGAGGAGACTGTGGAGGATCTGCCGGGCCATCTGATGCCATTCCCTATGCGGGTGTTGGAGGACGGTTCAATGGATGRGGATGAGGATACTGTGTTCCCTGACACAAAAGCTTCTGTGAAAGGCCACAAAATTGATGTGCTTCCTCCCATCCTCACAACCTGATAACTTAGCCATTACTCCTTGGATGCTTATTATGCGTGGCATGCTATTTTCAGATTTGTTCCCTTACAACCTGATAACTTAGCCATTACTACTTGGATGATTATTATGCGTGGCATGCTATTTTCTAGACTTGTTCCCTCCCACTCCTGTGAGATGTTAATAATAAAATTATAGTCTGTTTCTCTGAAMAKGGATTAAATGATAGTGGGTGATCTT

Ace file of the UniGene sp_v1.1_unigene29301

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phospholipase D (EC:2.7.7.38 3.1.4.4)	-	-	51%
FL-Next	sp=Phospholipase D alpha 1; Zea mays (Maize).	-	-	52%
Blast2go	phospholipase d	-	-	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q43270

Fln msg:

Fln protein: MASQVVHGTLTATIFEARHLSHGGLPRLLRKVGEEVKELLHQDKHSGLYATIDIGIARIARTRVLSREPTNPIWNETFHILCAYTSPSLVISVKKGLEISAQVVGRAKIPISEILSGKVIEGWYDLYNEDFSEQLKKSQIHARLQFKQVSEDPYWGSGIRDRDFPGVQHVYFKQRKGCRVNLYQNSHLSENYRPRIELGHGEERALYRPPRLWEEVYQYIDGAEQFIYIAGWSVNTKITLVRDKERMIPGAETVTLGELLKKKADQGVRVLVLIWEDRTAVELLRNQGLMQTHCDETFEYFKGTNVYCFQCPRYADRSLSAFQTVEIAAEFTHHQKTVCLDARVHGSENREVVSFVGGIDLCDGRYDNEIHPLFRTLDTVYRDDFHQNNYKGTDLRHGGPREPWHDAHSKIQGPAAYDVVTNFTQRWTKQADPTLLLNLEDLPGLLPPGTNFEGPETWNVQIFRSIDDASVVGFPANPSEAPELGLITVKDQVIDKSIQCAYIEAIRRARDFIYIQNQYFFGSCASWDRDQDCECLHLIPIEIALKVVSKIRARERFSVYVLTPMWPEGIPEGDTVQAILHWFRNTARMMYKMIGEALREEGLDHEYRPTDYLNFFCVGNREVKLPGEYEPPERPEEGTDYWNAQIHRRTMIYVHAKLMIVDDEYIIIGSANLNQRSMDGARDTEIAQGCYQPEHINQQGRRARGEIFGYRMSLWYEHFAHKNGGLRREYLHPESVECVRMVRRISEKIWESFVREETVEDLPGHLMPFPMRVLEDGSMDEDEDTVFPDTKASVKGHKIDVLPPILTT*

Protein Length: 810

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCAATACTCAACTTTGTCCTCAAAGTTTTGGGATCAATTATGTATCGTCGTGACCTTGGCTGTCACTCAACACTTTAGGTTTTTGAACAGCTGCAGGAACCTCCATGTAATTTTCAAGAAAAACATGTCCCATTGAACAGTGGTCTCAAAACCTGCTGGTCTTCAAATTCCCTGTACTCTTATAAATTTGTGTAGCTTGAAACATCTCCATAGTCAGTGCATTGCATTACTTTTGTGATTTACATATTTCTAATACAGGTCTCCA_-_ATGGCATCCCAAGTAGTTCATGGTACTCTTACTGCCACCATATTTGAAGCTAGGCACCTCAGTCATGGAGGCTTACCCAGGTTGCTGAGAAAGGTGGGGGAAGAAGTTAAGGAGCTTCTCCATCAAGATAAGCACAGTGGATTATATGCCACCATAGATATTGGTATTGCTAGAATTGCAAGAACCAGAGTTCTGTCCCGTGAACCTACAAACCCAATTTGGAACGAAACTTTTCACATACTCTGCGCCTACACATCGCCTTCTCTGGTTATCAGCGTTAAGAAGGGATTGGAAATCTCTGCACAAGTGGTTGGAAGAGCCAAGATCCCAATCTCAGAAATTCTCAGCGGCAAGGTCATCGAGGGCTGGTATGACTTATATAATGAAGACTTTTCCGAACAGCTGAAGAAATCTCAGATCCATGCCCGCCTCCAGTTCAAACAAGTCTCAGAAGATCCATATTGGGGTTCCGGGATTCGAGATCGAGACTTCCCAGGAGTCCAGCATGTGTATTTCAAGCAGAGGAAAGGATGCAGAGTCAATCTGTATCAGAATTCTCACTTATCAGAAAACTATCGTCCCAGGATCGAGCTAGGTCATGGTGAGGAGCGCGCCTTATACAGGCCTCCGAGACTGTGGGAGGAAGTGTACCAGTACATTGATGGAGCCGAGCAATTTATATACATTGCTGGATGGTCTGTAAATACCAAGATTACGCTTGTGAGGGACAAGGAAAGGATGATCCCTGGTGCAGAAACTGTGACATTGGGTGAACTTTTGAAGAAGAAAGCGGATCAGGGAGTAAGAGTTCTGGTCCTCATCTGGGAAGATAGAACGGCCGTGGAGCTTCTCAGAAACCAGGGACTCATGCAAACCCACTGTGACGAGACATTTGAATATTTCAAGGGCACCAATGTCTACTGCTTTCAATGTCCCAGAtACGCAgACCGTTCGTTGAGTGCATTCCAAACCGTGGAGATTGCAGCAGAGTTTACCCATCACCAGAAGACTGTGTGCTTGGATGCCCGCGTCCATGGCTCTGAGAATCGCGAGGTCGTGAGCTTCGTTGGAGGAATTGATCTCTGCGATGGAAGGTATGATAACGAGATCCATCCATTGTTTAGGACTCTGGATACTGTTTACAGGGATGATTTTCATCAGAACAATTACAAGGGAACGGATCTTCGGCACGGAGGCCCTAGGGAGCCATGGCATGATGCCCATTCTAAGATCCAGGGCCCTGCTGCTTACGATGTGGTCACCAATTTTACTCAGCGCTGGACAAAACAGGCCGATCCCACACTTCTCCTAAATCTTGAGGATTTACCAGGCCTATTGCCGCCTGGAACAAATTTTGAAGGTCCGGAGACCTGGAATGTTCAGATCTTTAGGTCTATAGACGATGCTTCAGTGGTCGGATTCCCTGCAAATCCCTCCGAAGCGCCCGAGCTGGGTTTGATTACTGTAAAGGATCAAGTAATAGACAAAAGCATCCAGTGCGCCTATATCGAAGCCATTCGCCGAGCCAGAGACTTCATTTACATACAGAACCAGTACTTCTTTGGCAGTTGCGCTTCTTGGGACCGAGATCAGGACTGCGAATGTCTGCATCTGATACCAATTGAGATTGCGCTAAAGGTAGTGAGCAAGATCAGAGCCCGGGAGCGGTTCTCCGTGTATGTGCTGACCCCAATGTGGCCGGAGGGAATACCGGAGGGCGATACTGTGCAGGCAATCCTGCACTGGTTCAGGAACACCGCGCGCATGATGTATAAGATGATCGGCGAAGCACTCAGGGAAGAGGGCCTGGACCATGAGTACCGCCCGACTGATTATTTGAATTTCTTCTGCGTGGGGAACAGGGAGGTGAAGCTCCCGGGCGAATATGAACCTCCAGAAAGACCAGAAGAAGGGACCGATTACTGGAATGCGCAGATTCACAGGAGAACCATGATCTATGTCCATGCCAAGCTCATGATAGTGGATGATGAATATATTATCATAGGATCAGCGAACCTGAACCAGCGATCCATGGATGGAGCCAGAGACACAGAAATAGCCCAGGGTTGTTACCAGCCAGAGCACATCAACCAGCAGGGTCGCCGAGCTCGAGGGGAGATATTCGGATACCGAATGTCACTGTGGTATGAACATTTTGCGCATAAAAATGGAGGCCTGCGGCGTGAATATCTTCATCCAGAGAGTGTTGAATGCGTGAGGATGGTGCGCCGGATCTCTGAGAAAATTTGGGAGTCATTTGTTCGGGAGGAGACTGTGGAGGATCTGCCGGGCCATCTGATGCCATTCCCTATGCGGGTGTTGGAGGACGGTTCAATGGATGaGGATGAGGATACTGTGTTCCCTGACACAAAAGCTTCTGTGAAAGGCCACAAAATTGATGTGCTTCCTCCCATCCTCACAACCTGA___TAACTTAGCCATTACTCCTTGGATGCTTATTATGCGTGGCATGCTATTTTCAGATTTGTTCCCTTACAACCTGATAACTTAGCCATTACTACTTGGATGATTATTATGCGTGGCATGCTATTTTCTAGACTTGTTCCCTCCCACTCCTGTGAGATGTTAATAATAAAATTATAGTCTGTTTCTCTGAAcAtGGATTAAATGATAGTGGGTGATCTT

Fln Alignment:

sp_v1.1_unigene29301___MASQVVHGTLTATIFEARHLSH-----GGLPRLLRKVGEEVKELLHQDKHSG-LYATIDIGIARIARTRVLSREPTNPIWNETFHILCAYTSPSLVISVKKGLEISAQVVGRAKIPISEILSGKVIEGWYDLYNEDFSEQLKKSQIHARLQFKQVSEDPYWGSGIRDRDFPGVQHVYFKQRKGCRVNLYQNSHLSENYRPRIELGHGEERALYRPPRLWEEVYQYIDGAEQFIYIAGWSVNTKITLVRDKERMIPGAETVTLGELLKKKADQGVRVLVLIWEDRTAVELLRNQGLMQTHCDETFEYFKGTNVYCFQCPRYADRSLSAFQTVEIAAEFTHHQKTVCLDARV--HGSENREVVSFVGGIDLCDGRYDNEIHPLFRTLDTVYRDDFHQNNYKGTDLRHGGPREPWHDAHSKIQGPAAYDVVTNFTQRWTKQAXXXXXXXXXXXXXXXXXXXNF---EGPETWNVQIFRSIDDASVVGFPANPSEAPELGLITVKDQVIDKSIQCAYIEAIRRARDFIYIQNQYFFGSCASWD----RDQDCECLHLIPIEIALKVVSKIRARERFSVYVLTPMWPEGIPEGDTVQAILHWFRNTARMMYKMIGEALREEGLDHEYRPTDYLNFFCVGNREVKLXXXXXXXXXXXXXTDYWNAQIHRRTMIYVHAKLMIVDDEYIIIGSANLNQRSMDGARDTEIAQGCYQPEHINQQGRRARGEIFGYRMSLWYEHFAHKNGGLRREYLHPESVECVRMVRRISEKIWESFVREETVEDLPGHLMPFPMRVLEDGSMDEDEDTV-FPDTKASVKGHKIDVLPPILTT
Q43270_______________MAQILLHGTLHATIFEAESLSNPHRATGGAPKFIRKLVEGIEDTVGVGKGATKIYATVDLEKARVGRTRMISNEPVNPRWYESFHIYCAHMAADVIFTVKIDNSIGASLIGRAYLAVQDLLGGEEIDKWLEISDEN-REPVGDSKIHVKLQYFDVGKDRNWARGVRSTKYPGVPYTFFSQRQGCKVTLYQDAHVPDNFVPRIQLADGKN---YEPHRCWEDIFDAISKAQHLIYITGWSVYTEITLVRDTNRPKPGGD-VTLGELLKRKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETANYFHGTDVNCVLCPRNPDDSGSFVQDLQISTMFTHHQKIVVVDHEMPNQGSQQRRIVSFIGGIDLCDGRYDTQYHSLFRTLDTVHHDDFHQPNFEGGSIKKGGPREPWHDIHSRLEGPIAWDVLYNFEQRWRKQGGKDLLVRLRDLPDIIIPPSPVMFPEDRETWNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKDQIIDRSIQDAYVNAIRRAKNFIYIENQYFLGSSYGWKPEGIKPEEIGALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYTDIAQALEANGI--EANPKDYLTFFCLGNREVKQEGEYEPEEHPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLATR-QPARGQIHGFRMSLWYEHL----GMLEDVFQRPESVECVQKVNEVAEKYWDLYSSDDLEQDLPGHLLSYPIGVTADGSVTELPGMENFPDTRARVLGNKSDYLPPILTT

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
982	33	66			0.997452
983			66	33	0.997452
984	66		33		0.997452
986		66	33		0.997452
1515		40	60		1.0
1568	12	87			0.992554
1638		90		10	0.90298
1694		18		81	1.0
1754	81		18		1.0
1801		22		77	1.0
1811		20		80	1.0
1869	79		20		1.0
1940		82		17	1.0
1942	82		17		1.0
1946		17		82	1.0
1961	81		18		1.0
1976	83	16			1.0
1997	81			18	1.0
2013			20	80	1.0
2020	89	10			0.999919
2050	15			84	0.999986
2054		14	85		0.999981
2061	15		84		0.999986
2063	15			84	0.999986
2067	15		84		0.999986
2076	84		15		0.999986
2095		16	83		0.999991
2140	10		90		0.90298
2141	20		80		0.999999
2142	80			20	0.999999
2143	90		10		0.90298
2171	15		84		0.999986
2198			84	15	0.999986
2309		16		83	0.994512
2357			15	84	0.999986
2462	52		39		1.0
2973	11	11		55	0.999999
2974	37		62		1.0
2975	85		14		0.993533
2977	60	40			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain