SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29277

Length: 1172 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29277

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoglycerate kinase n=3 Tax=Picea sitchensis RepID=A9NW50_PICSI	-	-	77%
FL-Next	sp=Phosphoglycerate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	phosphoglycerate kinase	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phosphoglycerate kinase	IPR001576	-	0.0	74%
Blast2go	Phosphoglycerate kinase, C-terminal	IPR015901	-	0.0	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLY9

Fln msg: your sequence is shorter than subject: 230 - 462

Fln protein: RRDLGCHSCVVTLAVTQQMYKKVDKLVLGGIIYNTYLCAKYGVKIAGVEESDIELAKELVEQDKVHKKILELQVLVETDTLDGRFEGKFRTIDVKDFAPGQTYKYVVDVDPVSFERDEAKQAMNSAKTIFVNAVMGFMPHFWHGTSKMDEVIDKNRSAQKFFGGGDTLQTFKSLHPALYEAALNNVKYYLFTGGGTVLKVIEEGDPMGLETVKALIDNKANYYKSIQNS*

Protein Length: 231

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGCGTCGTGACCTTGGCTGTCACTCAACAGATGTACAAGAAAGTTGATAAGTTGGTTCTGGGTGGTATTATTTACAATACTTATCTATGTGCTAAATATGGAGTTAAAATTGCTGGTGTTGAGGAATCAGATATTGAACTTGCAAAAGAGCTGGTAGAACAGGATAAGGTGCACAAAAAAATTCTCGAGTTGCAGGTTCTGGTTGAAACTGATACTCTGGATGGTAGATTTGAAGGGAAATTTAGAACGATTGATGTCAAGGATTTTGCTCCAGGCCAGACTTACAAGTATGTTGTTGATGTTGACCCTGTCTCATTTGAGAGAGATGAGGCTAAACAAGCAATGAACTCAGCTAAGACAATATTTGTTAATGCTGTGATGGGATTCATGCCACATTTCTGGCACGGTACAAGCAAAATGGATGAGGTCATTGATAAAAATCGTTCTGCTCAAAAATTCTTTGGAGGTGGTGATACCCTTCAGACTTTTAAAAGCCTTCATCCAGCCCTGTATGAAGCTGCATTGAACAATGTCAAATACTATTTATTTACGGGCGGTGGCACTGTTCTGAAAGTTATTGAGGAGGGAGATCCAATGGGTTTAGAGACTGTAAAGGCTCTTATTGACAACAAAGCTAACTATTACAAGAGCATTCAAAACAGTTGA___AGCTAGTTTATGGCACGTGGTTTTAACTGGCAGAATAAGGGGTTGATTTCATGCCGTTTGTTAGAATGACAACCATCACGTAGAGTTTGACGAAAGGAATATTTGGTAGAATTTTTGATAATTTATTACTTACATATTTGTGGAGGGTTCCGAAGATTATGGCGGAGGAATAATTTTTTTGTTACCAACAGGCATTCTTGTCCAAGTCAAGATTTAAGGCATTTCTTAGTCTCGTAAAGCTTTGTTTTTTTTGACATACTAGCAGAAAACTGAAAGTAATATCGTACTTCCAAGTTCCAAGAGATCCTTTTCTTAGTTATTGAAATGCATTTCCTGAAAATTACTCAGCTTTATTGATAGTTTGGGTAAGATGCTGCATTTGTAAGAAATATATTAGGATGACAGTCACAATGGATAGTATTGCTAATAACTATTTTTGGGGCTATTGAACCACAATGAAATAACTTTGAGACCTTGCAGGG

Fln Alignment:

sp_v1.1_unigene29277___QMYKKVDKLVLGGIIYNTYLCAKYGVKIAGVEESDIELAKELVEQDKVHKKILELQVLVETDTLDGRFEGKFRTIDVKDFAPGQTYKYVVDVDPVSFERDEAKQAMNSAKTIFVNAVMGFMPHFWHGTSKMDEVIDKNRSAQKFFGGGDTLQTFKSLHPALYEAALNNVKYYLFTGGGTVLKVIEEGDPMGLETVKALIDNK
B8LLY9_______________QIYKKVDKLVLGGVIYNTYLCAKYGVKIAGVQDSDIELAKELVEQDKTQGKIVEMDILVETDTLSGRFEGKYRAVNVKDFAPGKTYNYIVDIDPLSLESEDVLQALNSAKTIFVNAVMGFMPNFWHGTSKLDEVIDNNQSAKKYFGGGDTLQAFKSLHPNLYQAALDNTNYYLFTGGGTVLKVIEEGDSMGLDTVRALIENK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1079	41		58		1.0
1153			66	33	1.0
1164	83	16			0.994513
1166	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain