SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29257

Length: 1126 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29257

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Low-phosphate root 1 n=6 Tax=Arabidopsis RepID=A5X8Y8_ARATH	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	spore coat protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	78%
Blast2go	meristem maintenance	GO:0010073	Biological Process	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cupredoxin	IPR008972	-	0.0	78%
Blast2go	Multicopper oxidase, type 2	IPR011706	-	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY9

Fln msg: Separated hits, possible frame ERROR between 111 and 150, your sequence is shorter than subject: 236 - 583

Fln protein: ATEEATLTNDAPYPYPSGDPVDNLNSKVMKFLMKPRxxxxxxxxxxxxxxIPEKLVEYRRPRKKNAAHTRYLTMYEYESASGEPTHLFINGLPFDAQVTETPRQGTSEVWHVINLTEDNHPLHIHLGLFIVLDQTELLKMEEFKSCMQKNNDALKCEIQKHAKGKVMAAPAQERGWKNVFKMKPGHTTTILVQFSLLNSRHGYPFNASAEPGYVYHCHILDHEDNEMMRPLKIRS*

Protein Length: 237

Fln nts: GCCACAGAGGAGGCCACATTAACAAACGACGCACCATATCCATACCCATCTGGAGACCCTGTCGACAATCTGAACAGCAAGGTCATGAAATTCCTTATGAAACCCCGCCGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATCCCTGAAAAACTGGTTGAATATCGTCGGCCCCGAAAGAAAAACGCAGCGCATACGAGGTACTTGACCATGTATGAATACGAAAGCGCTTCTGGAGAACCGACCCATTTGTTCATCAACGGATTACCCTTCGACGCACAGGTTACAGAGACCCCAAGGCAAGGAACCAGCGAGGTATGGCATGTCATCAATCTGACGGAGGACAATCATCCTCTGCATATCCATCTGGGGCTGTTCATAGTCCTTGACCAAACAGAACTGCTGAAGATGGAGGAATTTAAGAGCTGCATGCAGAAGAATAACGACGCGCTGAAATGCGAGATACAGAAGCACGCGAAGGGAAAAGTGATGGCAGCTCCTGCGCAGGAGCGTGGATGGAAAAACGTGTTTAAGATGAAGCCTGGGCATACGACAACCATTCTTGTCCAGTTTTCTCTCTTGAACTCTCGGCATGGTTATCCGTTTAATGCCAGTGCGGAACCAGGCTATGTGTATCACTGCCATATTCTTGATCACGAAGACAATGAGATGATGAGGCCTCTCAAAATTCGATCTTGAATTCCAACTCAGCCGCATGAGTGTATGGAATCAGAAAGCTTTGATTTTCATAACATTGTCCTTTCGTCAGGATGATCAATAATTACACGCTGGAATTTTATACAATTCTCATAAGATGTTCTACAATTCTCATAAAATGGTGGTGTAATGATAAACGTGATAAAATATCATGAAGTGGAGCAATTATAAAACTGATAAAATTATGTGATCAGTATTCGCTCACTGTAATCGTGGACGGCGTTTGTGTGGCCGTGCCAGGGAAATCAGTTCATTAAAATCGTTACGATAATGAAGAATGTGTGGGGGCATTATGAAGGAATCAAATCAAAACAGATTTCCTCTATAAAAAGAAGGAATCGATCACTTAGAGATGATGGTTCTTTTATGCTTCGTTTCTTTTTATGATATATATAAAATAA

Fln Alignment:

sp_v1.1_unigene29257___TEEATLTNDAPYPYPSGDPVDNLNSKVMKFLMKPRRxxxxxxxxxxxxxIPEKLVEYRRPRKKNAAHTRYLTMYEYESASGEPTHLFINGLPFDAQVTETPRQGTSEVWHVINLTEDNHPLHIHLGLFIVLDQTELLKMEEFKSCMQKNNDALKCEIQKHAKGKVMAAPAQERGWKNVFKMKPGHTTTILVQFSLLNSRHGYPFNASAEPGYVYHCHILDHEDNEMMRPLKIRS
B8LRY9_______________TGEAILTNDAVYPYPSGDPVDHLNSKVMKFVIESKRxxxxxxxxxxxxxIPEKLIEYRRPLKESAAHTRYITMYEYESASEEPTHLFFNGLPYDAPATETPRQGTSELWHVIDLTDDNHPLHIHLGLFVVLQQTELLKLDEFKACMQKQNDALRCNVEKHAKGKVMAAPVQERGWKNVFKIQPGYITTILVQFSFLDSHQPYPFNASTEPGYVYHCHILDHEDNEMMRPLKIRS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
305	83		16		0.999991
362	23			76	1.0
428		18	9	72	0.999994
585			20	80	0.995493
688	83		16		0.994512
739	40		60		1.0
828	83		16		0.994512
843		83		16	0.994512
900	83			16	0.994512
930			66	33	1.0
938			16	83	0.994512
940	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain