SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29237

Length: 2154 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene29237
CGTCGTGGGGTTGGTGTGAGTAAACTTACACCGATCGACCGGGAGACCACGCTACCTCGTGAATGCCTAAAATATCACAAACCTTTGAAGAAAATTTCCGCAATGGTCCCGCCATTCCATCACGGGTCCCATCCATCCATACAGGTCACCTACTCACAGTAACAATAACAAATGCCACATATAACAATTAGTAACACTTAACTGGAAGCCTGTTCTTGATGCAATGTGCAGAATCCGCAATATTATTTGAATGGTGGATTCTTTTTTAACCTGAGTCAAACTTCTTGGTGATTTTGAAATGGGTTTGGTTTTAGGTATATTTAGCCTTTACACTTGTTTTGGATGCGTTGTTCATAGCTGTCCTTGCTGATGATAATTGAGCTCATCAGCCCAATGCTTGGTCTATTGGACTCAGCATCATGATCGCTGTTGAAACCAAGAGACAGATGTGGGCAACCTGAATTACGTGATCGGCAAAAAAATACCAGTGAAAGCTGAAGCATCTTTGTAGGTTTTGAGAATCTTTGGCCCCGTGATTTTATCAAGAAAACCAACAGAATTCACATTGGTATTGTGCTTTTATCAAGGAAACCCACCTGCCATTCGAAAAAACAGAAAAACTCATTTGGTTATATTGTGATTTTGTGAAGAAAGCCTGTTGGGTATAGCAGGATCTGCTTCATTGTGTGAAGGTTTTGTACGTTTGGCCTGATATTGTCTACCATGGGAGGACTGGGTCCTATGGATGTTGAAAGAAAAGGCTCCATGGATTGGGGAAGAGGCAATAAAACGATCTATCCAATGCAGGACTCCCCGAGGCCTGCGGCAGTCCCATACTTCGAGGCCAGGCCTAACAGGAGGAGGAGTTCATGGATTATTTCACTATTTGTGGTGCTGAATACTGTGATATTCATCGTGGCAATGTTTATCAATGACTGTCCGAAGGATTTAGGTGACAATTGCACCCTGAAGTTTTTGGGGAGGTTCTCATTCCAGCCCCTCAAGGAGAATCCTCTTTTTGGACCTTCATCGGCCACTTTACAAAAGATGGGAGCTCTTGAGTGGACTAAGGTGGTCAAGGAGCACCAGGGATGGCGGCTTATCACATGTATCTGGTTGCATGCTGGGGTCATTCATCTACTTGCCAATATGTTGAGTCTCATATTTATAGGGATTCGCTTGGAGCAGGAATTTGGTTTTGTGAGGATTGGAATAGTCTACCTAGTCTCTGCTTTTGGTGGTAGTGTGTTGTCAGCACTTTTCAACCAGAATGGTGTATCTGTTGGCGCATCTGGTGCATTATTTGGTTTATTGGGGGCGATGCTTTCAGAGCTTATTACTAACTGGACAATTTATGCCAGTAAGTTTGCAGCATTGGTAACACTACTTTTCATTATTGTCGTCAACTTGGCTTTTGGGATACTACCACATGTAGACAACTTTGCCCACATTGGAGGATTTATATCAGGATTTCTTCTTGGATTTGTGTTTCTGATGCGGCCTCAGTTTGGATGGGTGAATCGCAAGAACATTCCGCCTGGATATGCTGTGAACTCTGTTGTCAAATCTAAGCACAATGTATATCAATATACACTAGGGTTGTTATCACTTATTCTTCTTATTGTCGGATTTACTGTTGGCTTGGTGTTGCTTTTCCATGGTGTCAATGCAAATAAGCACTGCAGCTGGTGCCATTATTTAGATTGCGTGCCGACATCCAGGTGGTCTTGTAATGATGGAGTGATTACTTGCCAGGAAATTCAAAGTGACAGTGATTTCACACTGATTTGTCAAAATGGTGGCAAGAGTAAGGTCTATCCATTCCAAAGTATAACTGAAGCCAAGAAAAGGCAGCTTTGTAGTCAACAGTGCTCTTAATTTCATAGTAAGGTCTATCCATTCCAAAGTATAACTGAAGCCAAGAAAAGGCAGCTTTGAAGCCAAGAAAAGGCAGCTTTGTAGTCAACAGTGCTCTTAATTTCATATGTACATGCACAAACATACGTATTAGAAAATATTGAAGGGTTGTTTAAGTAATATTTTCCATTCTAACTACAGTCTTTACAGGTTGTAAATTAATAACTCGGAACAAGTCATTACACTACTTGCTATTCTTTATCAATAAATGGCTAAGATCTTGATATTGAGTTGGCT

Ace file of the UniGene sp_v1.1_unigene29237

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	KOM, putative n=1 Tax=Ricinus communis RepID=B9T4C7_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S54, rhomboid	IPR002610	-	0.0	77%
Blast2go	Peptidase S54, rhomboid domain	IPR022764	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKV6

Fln msg:

Fln protein: MGGLGPMDVERKGSMDWGRGNKTIYPMQDSPRPAAVPYFEARPNRRRSSWIISLFVVLNTVIFIVAMFINDCPKDLGDNCTLKFLGRFSFQPLKENPLFGPSSATLQKMGALEWTKVVKEHQGWRLITCIWLHAGVIHLLANMLSLIFIGIRLEQEFGFVRIGIVYLVSAFGGSVLSALFNQNGVSVGASGALFGLLGAMLSELITNWTIYASKFAALVTLLFIIVVNLAFGILPHVDNFAHIGGFISGFLLGFVFLMRPQFGWVNRKNIPPGYAVNSVVKSKHNVYQYTLGLLSLILLIVGFTVGLVLLFHGVNANKHCSWCHYLDCVPTSRWSCNDGVITCQEIQSDSDFTLICQNGGKSKVYPFQSITEAKKRQLCSQQCS*

Protein Length: 386

Fln nts: CGTCGTGGGGTTGGTGTGAGTAAACTTACACCGATCGACCGGGAGACCACGCTACCTCGTGAATGCCTAAAATATCACAAACCTTTGAAGAAAATTTCCGCAATGGTCCCGCCATTCCATCACGGGTCCCATCCATCCATACAGGTCACCTACTCACAGTAACAATAACAAATGCCACATATAACAATTAGTAACACTTAACTGGAAGCCTGTTCTTGATGCAATGTGCAGAATCCGCAATATTATTTGAATGGTGGATTCTTTTTTAACCTGAGTCAAACTTCTTGGTGATTTTGAAATGGGTTTGGTTTTAGGTATATTTAGCCTTTACACTTGTTTTGGATGCGTTGTTCATAGCTGTCCTTGCTGATGATAATTGAGCTCATCAGCCCAATGCTTGGTCTATTGGACTCAGCATCATGATCGCTGTTGAAACCAAGAGACAGATGTGGGCAACCTGAATTACGTGATCGGCAAAAAAATACCAGTGAAAGCTGAAGCATCTTTGTAGGTTTTGAGAATCTTTGGCCCCGTGATTTTATCAAGAAAACCAACAGAATTCACATTGGTATTGTGCTTTTATCAAGGAAACCCACCTGCCATTCGAAAAAACAGAAAAACTCATTTGGTTATATTGTGATTTTGTGAAGAAAGCCTGTTGGGTATAGCAGGATCTGCTTCATTGTGTGAAGGTTTTGTACGTTTGGCCTGATATTGTCTACC_-_ATGGGAGGACTGGGTCCTATGGATGTTGAAAGAAAAGGCTCCATGGATTGGGGAAGAGGCAATAAAACGATCTATCCAATGCAGGACTCCCCGAGGCCTGCGGCAGTCCCATACTTCGAGGCCAGGCCTAACAGGAGGAGGAGTTCATGGATTATTTCACTATTTGTGGTGCTGAATACTGTGATATTCATCGTGGCAATGTTTATCAATGACTGTCCGAAGGATTTAGGTGACAATTGCACCCTGAAGTTTTTGGGGAGGTTCTCATTCCAGCCCCTCAAGGAGAATCCTCTTTTTGGACCTTCATCGGCCACTTTACAAAAGATGGGAGCTCTTGAGTGGACTAAGGTGGTCAAGGAGCACCAGGGATGGCGGCTTATCACATGTATCTGGTTGCATGCTGGGGTCATTCATCTACTTGCCAATATGTTGAGTCTCATATTTATAGGGATTCGCTTGGAGCAGGAATTTGGTTTTGTGAGGATTGGAATAGTCTACCTAGTCTCTGCTTTTGGTGGTAGTGTGTTGTCAGCACTTTTCAACCAGAATGGTGTATCTGTTGGCGCATCTGGTGCATTATTTGGTTTATTGGGGGCGATGCTTTCAGAGCTTATTACTAACTGGACAATTTATGCCAGTAAGTTTGCAGCATTGGTAACACTACTTTTCATTATTGTCGTCAACTTGGCTTTTGGGATACTACCACATGTAGACAACTTTGCCCACATTGGAGGATTTATATCAGGATTTCTTCTTGGATTTGTGTTTCTGATGCGGCCTCAGTTTGGATGGGTGAATCGCAAGAACATTCCGCCTGGATATGCTGTGAACTCTGTTGTCAAATCTAAGCACAATGTATATCAATATACACTAGGGTTGTTATCACTTATTCTTCTTATTGTCGGATTTACTGTTGGCTTGGTGTTGCTTTTCCATGGTGTCAATGCAAATAAGCACTGCAGCTGGTGCCATTATTTAGATTGCGTGCCGACATCCAGGTGGTCTTGTAATGATGGAGTGATTACTTGCCAGGAAATTCAAAGTGACAGTGATTTCACACTGATTTGTCAAAATGGTGGCAAGAGTAAGGTCTATCCATTCCAAAGTATAACTGAAGCCAAGAAAAGGCAGCTTTGTAGTCAACAGTGCTCTTAA___TTTCATAGTAAGGTCTATCCATTCCAAAGTATAACTGAAGCCAAGAAAAGGCAGCTTTGAAGCCAAGAAAAGGCAGCTTTGTAGTCAACAGTGCTCTTAATTTCATATGTACATGCACAAACATACGTATTAGAAAATATTGAAGGGTTGTTTAAGTAATATTTTCCATTCTAACTACAGTCTTTACAGGTTGTAAATTAATAACTCGGAACAAGTCATTACACTACTTGCTATTCTTTATCAATAAATGGCTAAGATCTTGATATTGAGTTGGCT

Fln Alignment:

sp_v1.1_unigene29237___GLGPMDVERKGSMDWGRGNKTIYPMQDSPRPAAVPYFEARPNRRRSSWIISLFVVLNTVIFIVAMFINDCPKDLGDNCTLKFLGRFSFQPLKENPLFGPSSATLQKMGALEWTKVVKEHQGWRLITCIWLHAGVIHLLANMLSLIFIGIRLEQEFGFVRIGIVYLVSAFGGSVLSALFNQNGVXXXXXXXXXXXXXXXXXELITNWTIYASKFAALVTLLFIIVVNLAFGILPHVDNFAHIXXXXXXXXXXXXXXMRPQFGWVNRKNIPPGYAVNSVVKSKHNVYQYTXXXXXXXXXXVGFTVGLVLLFHGVNANKHCSWCHYLDCVPTSRWSCNDGVITCQEIQSDSDFTLICQNGGKSKVYPFQSITEAKKRQLCSQQCS
B8LKV6_______________GSGPMDIERKGSMDWGRGNKVIHPMQDSPRPAAVPYFEARPNRRRSSCIISLFVVLNIVIFLVAMFINDCPKDLGDSCTLKFLGRFSFQPLKENPLFGPSSSTLEKMGALEWQKVVKEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQEFGFARIGTVYLVSAFGGSVLSALFNQNGVSVGASGALFGLLGAMLSELITNWTIYASKFAALVTLVFIIVVNLAFGLLPHVDNFAHIGGFISGFLLGFVFLMRPQFGWVNRKIIPPGYDVNSVVKSKHNAYQYILGLLSLILLIVGFTVGLVLLFHGVNANKHCSWCHYLDCVPTSRWSCNDGVIACQETQSDTEFTLICQNGGKSKIYPFQNISEAKKRQLCLQQCS

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
364		88		11	0.923646
366			88	11	0.923646
452			90	10	0.90298
453	90		10		0.90298
454			10	90	0.90298
482	25	12			1.0
483	12	87			0.992554
627	75			25	1.0
628	75		25		1.0
629	75			25	1.0
630	75	25			1.0
642			42	57	1.0
671			16	83	0.999991
674	16		83		0.999991
675		16	83		0.999991
676		16		83	0.999991
677	83			16	0.999991
679	83		16		0.999991
682	83			16	0.999991
684			83	16	0.999991
685	83	16			0.999991
686	16			83	0.999991
691	16			83	0.999991
1223	88			11	0.991528
1230	11		88		0.991528
2080		75	25		0.996473
2087	20	20			0.992551

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain