SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29213

Length: 2849 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene29213
CGTAGCGACCTTGGCTGTCACTCAGTTCTACCCAGCCTGGGCTTATTCACTTCCAACATGCGTCGTGACCTTGGCTGTCACTCATGTTGGAGTCTGTTTTGTGGATCATTATCACATATTATACCATAGGTTTTGCCCCAAATCCTCAGAGATTTTTCCGACAGTTTGTGCTGCTCTTTACAGTCCATCAGATGTCTTTAGGCCTCTTTCGCTTTATAGCTGCCGTGGGACGCAATCGGATAGTGGCTAACACCTTCGGCTCGTTTGCCATCTTGATCATACTCGTTCTCGGAGGATTCATCATATCCAGAGATGATATTAAAGGATGGTGGATATGGGGTTACTGGATTTCTCCTCTCATGTATGCTCAAAATGGAATTGCAGTAAATGAGTTTACGGCAACTAGATGGCAAAAGCCAAATGACAACGTTGGCGTCAACTTAATGAGATCTCGCGGCCTTTTTCCCGATAGCTACTGGTATTGGCTTTCGATTGGAGCCCTCGTGGGGTTCAATATTTTATTTAACATCCTCTACACACTGGCATTGCACTATCTAGATCCTCTAGGAAAGCCTCAGGCATTAATTTCTGAAGATGATTTGAAACAAAAGCTGGCAGCTCAAACCGGGGTTGTGCAAAGAAACAGTATAAATGAAATGCAGACGATGCCAGGAGAAAACCATGAAGAGATTCAAGCTTCTGGTACGAACAATGCTGCTTCAAATTCTACACGAGAATCTGGAAAGAAAGGAATGGTTTTACCTTTTCAACCTCTGGCGATGGCTTTTGACAATGTCAATTACTTTGTAGACATGCCCCCAGAAATGAGGCAACAAGGAATTGAAGAAAATAGACTCCAGTTATTGCGTAGAGTGAGTGGAACATTCAGGCCTGGTGTGCTTACTTGTTTAATGGGTGTGAGTGGAGCTGGAAAAACAACCCTAATGGATGTTCTTGCTGGAAGGAAAACTGGTGGATACATCGAAGGGTCCATCACCATCTCTGGTTATCCCAAAAAACAAGAAACCTTTGCTCGTATCTCGGGTTACTGCGAACAAACTGATATCCATTCTCCTTTCGTTACTGTTTATGAGTCACTGGTATACTCTGCCTGGCTTCGTCTCCCATCTGAGGTCGATACTGCATTAAGAAAGACATTTGTGGATGAAGTTATGGATCTCGTGGAACTGAATAACCTGAGACAAGCTCTGGTCGGGCTTCCTGGAGTGAATGGCCTGTCCACGGAACAACGGAAGAGATTGACAATAGCAGTTGAATTGGTTGCCAATCCTTCAATAATCTTCATGGACGAGCCAACATCAGGACTGGATGCAAGAGCTGCTGCTATTGTGATGAGAACTGTCCGGAACACTGTGGACACAGGCCGAACTGTTGTTTGTACTATTCATCAACCCAGCATTGACATCTTTGAAGCTTTTGATGAGCTTGTGTTGATGAAGCGAGGAGGGCAGATGATATACGTTGGCCCTCTTGGCCGCCATTCCCAAACACTGATCGACTATTTCGAGGCCATTCCAGGCGTTCCCAAAATCACGAAGGGGTACAATCCTGCGACATGGATGCTTGAAGTGTCTTCTGTGGGCGCAGAATTGCGTCTTGGAACCGATTTTGCAGATGTATACAGGAATTCATCCCTCTACCAACGAAATGAAGCTCTAATCAAGGAACTGAGCGTGCCGGGTCCGGGAATGAAGGATTTACACTTCGAATCTCAATTTTCACAACCTTTGATAATTCAATCCTGGGCCTGCTTGTGGAAGCAGCACTGGTCATACTGGAGAAACCCCGAGTACAATGCCGTCCGTTTCTTTTTCACTTTGGTCACTGCTGTGCTTTTTGGTACCATCTTTTGGAGAATGGGTCAAAAAATAGAGGAGCAACAAAAAGTTTTGAATGCTATGGGATCACTGTTCGCGGCTGTGTTATTCATAGGTGTGAACAATGCTTCTTCAGTCCAACCTGTAGTGGATGTTGAAAGGACAGTCTTCTACAGAGAAAAGGCAGCCGGGATGTACTCTGCTATGCCTTATGCCCTCGCACAAGTATTGATCGAAGTGCCATATGTATTTGTTCAAGCGGCGGTGTATGGAGTGATCGTGTACTCGATGGTCAACTTCCAATGGCAGGCAGACAAGTTCTTCTGGTTTTTCTTCTTCATGTTCTTCACATTTTTGTACTACACATACTACGGAATGATGACAGTAGCTCTGACTCCTAATGTCAACATAGCTGCCATTGTCTCCTCGGCTTTCTATTCCATCTGGATGCTTTTCTGCGGTTTCATAATCCCTCGTCCGAAAATTCCGGTGTGGTGGAGATGGTACTACTGGGCATGCCCTGTTGCATGGACTCTGTACGGTTTGATAGCATCACAGTTTGGGGATTATGAAACCCTCGTGACTAGAACAGACGGCACTCGAGAGCCAGTGAAACAGTTTATCAAAAGTTATTTTGGATTCAGACACAGCTTCTTGGGACCTGTTGCAGTTGTGACAGCAGGATGGAGCATTCTCTTCGCATTCATCTTTGCCATATCCATCAAAAAGCTCAACTTCCAGTCAAGATAGTCACTGAAATATCAAATATTATTTTTTCAATGTAACTAGTATATCTTATTGCTGGGTGCCAGTAACAAATGTCCTATCCGAGCGATGATATTACAGAGTACAAGGAGACGGATTATATGTACTCATATGTCCTATTCTATTTAAGGATATTTCTTTTGCGTAAGGGATATAGCTTGTCCTCCCTGTATATTATATATAAAGGGGGACCGCATTTTGCAAATTCCAGGTCGTCGTTTTTCAATCGATTTTTAATGAGAATTT

Ace file of the UniGene sp_v1.1_unigene29213 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9RJZ7_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	atp-binding cassette	-	-	78%

Source	InterPros	Term	Type	Identity
Blast2go	ABC transporter-like	IPR003439	-	78%
Blast2go	AAA+ ATPase domain	IPR003593	-	78%
Blast2go	ABC-2 type transporter	IPR013525	-	78%
Blast2go	Plant PDR ABC transporter associated	IPR013581	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW55

Fln msg: your sequence is longer than subject: 835 - 471

Fln protein: MLESVLWIIITYYTIGFAPNPQRFFRQFVLLFTVHQMSLGLFRFIAAVGRNRIVANTFGSFAILIILVLGGFIISRDDIKGWWIWGYWISPLMYAQNGIAVNEFTATRWQKPNDNVGVNLMRSRGLFPDSYWYWLSIGALVGFNILFNILYTLALHYLDPLGKPQALISEDDLKQKLAAQTGVVQRNSINEMQTMPGENHEEIQASGTNNAASNSTRESGKKGMVLPFQPLAMAFDNVNYFVDMPPEMRQQGIEENRLQLLRRVSGTFRPGVLTCLMGVSGAGKTTLMDVLAGRKTGGYIEGSITISGYPKKQETFARISGYCEQTDIHSPFVTVYESLVYSAWLRLPSEVDTALRKTFVDEVMDLVELNNLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELVLMKRGGQMIYVGPLGRHSQTLIDYFEAIPGVPKITKGYNPATWMLEVSSVGAELRLGTDFADVYRNSSLYQRNEALIKELSVPGPGMKDLHFESQFSQPLIIQSWACLWKQHWSYWRNPEYNAVRFFFTLVTAVLFGTIFWRMGQKIEEQQKVLNAMGSLFAAVLFIGVNNASSVQPVVDVERTVFYREKAAGMYSAMPYALAQVLIEVPYVFVQAAVYGVIVYSMVNFQWQADKFFWFFFFMFFTFLYYTYYGMMTVALTPNVNIAAIVSSAFYSIWMLFCGFIIPRPKIPVWWRWYYWACPVAWTLYGLIASQFGDYETLVTRTDGTREPVKQFIKSYFGFRHSFLGPVAVVTAGWSILFAFIFAISIKKLNFQSR*

Protein Length: 836

Fln nts: CGTAGCGACCTTGGCTGTCACTCAGTTCTACCCAGCCTGGGCTTATTCACTTCCAACATGCGTCGTGACCTTGGCTGTCACTC_-_ATGTTGGAGTCTGTTTTGTGGATCATTATCACATATTATACCATAGGTTTTGCCCCAAATCCTCAGAGATTTTTCCGACAGTTTGTGCTGCTCTTTACAGTCCATCAGATGTCTTTAGGCCTCTTTCGCTTTATAGCTGCCGTGGGACGCAATCGGATAGTGGCTAACACCTTCGGCTCGTTTGCCATCTTGATCATACTCGTTCTCGGAGGATTCATCATATCCAGAGATGATATTAAAGGATGGTGGATATGGGGTTACTGGATTTCTCCTCTCATGTATGCTCAAAATGGAATTGCAGTAAATGAGTTTACGGCAACTAGATGGCAAAAGCCAAATGACAACGTTGGCGTCAACTTAATGAGATCTCGCGGCCTTTTTCCCGATAGCTACTGGTATTGGCTTTCGATTGGAGCCCTCGTGGGGTTCAATATTTTATTTAACATCCTCTACACACTGGCATTGCACTATCTAGATCCTCTAGGAAAGCCTCAGGCATTAATTTCTGAAGATGATTTGAAACAAAAGCTGGCAGCTCAAACCGGGGTTGTGCAAAGAAACAGTATAAATGAAATGCAGACGATGCCAGGAGAAAACCATGAAGAGATTCAAGCTTCTGGTACGAACAATGCTGCTTCAAATTCTACACGAGAATCTGGAAAGAAAGGAATGGTTTTACCTTTTCAACCTCTGGCGATGGCTTTTGACAATGTCAATTACTTTGTAGACATGCCCCCAGAAATGAGGCAACAAGGAATTGAAGAAAATAGACTCCAGTTATTGCGTAGAGTGAGTGGAACATTCAGGCCTGGTGTGCTTACTTGTTTAATGGGTGTGAGTGGAGCTGGAAAAACAACCCTAATGGATGTTCTTGCTGGAAGGAAAACTGGTGGATACATCGAAGGGTCCATCACCATCTCTGGTTATCCCAAAAAACAAGAAACCTTTGCTCGTATCTCGGGTTACTGCGAACAAACTGATATCCATTCTCCTTTCGTTACTGTTTATGAGTCACTGGTATACTCTGCCTGGCTTCGTCTCCCATCTGAGGTCGATACTGCATTAAGAAAGACATTTGTGGATGAAGTTATGGATCTCGTGGAACTGAATAACCTGAGACAAGCTCTGGTCGGGCTTCCTGGAGTGAATGGCCTGTCCACGGAACAACGGAAGAGATTGACAATAGCAGTTGAATTGGTTGCCAATCCTTCAATAATCTTCATGGACGAGCCAACATCAGGACTGGATGCAAGAGCTGCTGCTATTGTGATGAGAACTGTCCGGAACACTGTGGACACAGGCCGAACTGTTGTTTGTACTATTCATCAACCCAGCATTGACATCTTTGAAGCTTTTGATGAGCTTGTGTTGATGAAGCGAGGAGGGCAGATGATATACGTTGGCCCTCTTGGCCGCCATTCCCAAACACTGATCGACTATTTCGAGGCCATTCCAGGCGTTCCCAAAATCACGAAGGGGTACAATCCTGCGACATGGATGCTTGAAGTGTCTTCTGTGGGCGCAGAATTGCGTCTTGGAACCGATTTTGCAGATGTATACAGGAATTCATCCCTCTACCAACGAAATGAAGCTCTAATCAAGGAACTGAGCGTGCCGGGTCCGGGAATGAAGGATTTACACTTCGAATCTCAATTTTCACAACCTTTGATAATTCAATCCTGGGCCTGCTTGTGGAAGCAGCACTGGTCATACTGGAGAAACCCCGAGTACAATGCCGTCCGTTTCTTTTTCACTTTGGTCACTGCTGTGCTTTTTGGTACCATCTTTTGGAGAATGGGTCAAAAAATAGAGGAGCAACAAAAAGTTTTGAATGCTATGGGATCACTGTTCGCGGCTGTGTTATTCATAGGTGTGAACAATGCTTCTTCAGTCCAACCTGTAGTGGATGTTGAAAGGACAGTCTTCTACAGAGAAAAGGCAGCCGGGATGTACTCTGCTATGCCTTATGCCCTCGCACAAGTATTGATCGAAGTGCCATATGTATTTGTTCAAGCGGCGGTGTATGGAGTGATCGTGTACTCGATGGTCAACTTCCAATGGCAGGCAGACAAGTTCTTCTGGTTTTTCTTCTTCATGTTCTTCACATTTTTGTACTACACATACTACGGAATGATGACAGTAGCTCTGACTCCTAATGTCAACATAGCTGCCATTGTCTCCTCGGCTTTCTATTCCATCTGGATGCTTTTCTGCGGTTTCATAATCCCTCGTCCGAAAATTCCGGTGTGGTGGAGATGGTACTACTGGGCATGCCCTGTTGCATGGACTCTGTACGGTTTGATAGCATCACAGTTTGGGGATTATGAAACCCTCGTGACTAGAACAGACGGCACTCGAGAGCCAGTGAAACAGTTTATCAAAAGTTATTTTGGATTCAGACACAGCTTCTTGGGACCTGTTGCAGTTGTGACAGCAGGATGGAGCATTCTCTTCGCATTCATCTTTGCCATATCCATCAAAAAGCTCAACTTCCAGTCAAGATAG___TCACTGAAATATCAAATATTATTTTTTCAATGTAACTAGTATATCTTATTGCTGGGTGCCAGTAACAAATGTCCTATCCGAGCGATGATATTACAGAGTACAAGGAGACGGATTATATGTACTCATATGTCCTATTCTATTTAAGGATATTTCTTTTGCGTAAGGGATATAGCTTGTCCTCCCTGTATATTATATATAAAGGGGGACCGCATTTTGCAAATTCCAGGTCGTCGTTTTTCAATCGATTTTTAATGAGAATTT

Fln Alignment:

sp_v1.1_unigene29213___MLESVLWIIITYYTIGFAPNPQRFFRQFVLLFTVHQMSLGLFRFIA-AVGRNRIVANTFGSFAXXXXXXXXXXXISRDDIKGWWIWGYWISPLMYAQNGIAVNEFTATRWQ-----KPNDNVGVNLMRSRGLFPDSYWYWLSIGALVGFNILFNILYTLAL
A9NW55_______________LFQTILYGLITYSVIGFHWSVDKFF-WYLFVTLCHFLYFTYYGMLTVAISPNAQVAAVISSAFYSIFNLFSGFLITRPQLPRWWVWYYWICPLAWTLNGLVTSQYGDMRKKISIDGKPQQAIEDFLKDYFGFQRD--FLGVVAAVLVIFPIFFALLFSISI

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
2464		20		80	0.995493
2657		12	87		0.992554
2660			87	12	0.992554
2694	90	10			0.90298
2695	10			90	0.90298
2696		10	90		0.90298
2724	12			87	0.992554
2725		85	14		0.993533
2726			85	14	0.993533
2733	83	16			0.994512
2736			14	85	0.993533
2737		85	14		0.993533
2741		14		85	0.993533
2744		14	85		0.993533
2807	50		50		1.0
2809	50			50	1.0
2810		50	50		1.0
2812		50		50	1.0
2815		50	50		1.0
2816	50	50			1.0
2818	60			40	1.0
2819			60	40	1.0
2820		40	60		1.0
2824		60		40	1.0
2825	40		60		1.0
2828		40	60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain