SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29205

Length: 2574 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene29205
AAATCAACTTACTGGGAACATACCATATACAATTGGGAATTGTTCCAAACTCCAGATACTCATTCTAGCCTACAACAAATTGATTGGGAGTGTTCCCCTAGAGTTGGGTAAACTATCCCTCCTTGAAAAATTAGGCTTACATCATAATGAGCTTGAGAGTGGTAGCGCCACAACCATGCCTTTTCTTGAATCTCTTACCAATTGTTCTCACTTACAAAAACTATCATTGGGTTACAATAAACTAAGTGGTGTCTTTCCCCTTTCCATAGGGAGACTTTCTACCAATTTGTCTTTCTTTTCATTAGCAAACAACAAAATACAAGGAAACATTCCTCCACATATTGGCAATCTTAGTAGCCTAATCTTTCTAAATTTAAGTGGAAACTTTTTAAATGGTACCATTCCACCATTTGGAAACCTTACAAAATTAGAAAGATTGGACATAGGAAACAATGAATTAGAAGGTAACATCTCCAATCAATTTGAACAATTACAAGGACTTGGTCTCTTGGACATTAGTAGAAACAAACTCACTGGAAAGATTCCCAATTCCCTTCCACCGTCTAAACAACTAAGAAGAATCTTACTTCATGACAACAAGTTATCAGGGAGCATACCTGCCATCTTAGGAAACTACATAAATTTGGAATTGCTTGACCTGTCTCACAATATGCTCACCGGAAGCATTCCACGAGAAATTGCTAAACTTTCTAATCTACAATTCTATTTGAACTTGTCATGGAATTTATTAGATGGCTCGTTGCCCATGGAGATTAGTAAAATTGCAATGGCTCAAGCTATAGACATTTCATCCAATCACTTGACTGGGCCCATTCCACCTACACTTGGAAGTTGCAGTGAACTACAAACATTGAATTTATCTAGAAATGCCTTCCAAGGCTCTATTCCAGATTCACTTGGAACTTTACTAAGTCTTGTGAACCTAGATCTCTCTTTCAACTCCTTATCAGGTCCAATACCAGTGACTCTCCAAAAATTGAAAATGCTTCAGTGCTTGAATTTGTCTTTCAACAATCTCACAGGGGAAATCCCAAAAGCGGGATTTTTTGCAAATCAAACAATTATCATGTCCTTCATTGGGAATCCAGGCCTTTGTGGACCAAAAGTATTCATGTTACCTGCATGTCCAACATCAAGAAGTCATTTTGCACTTGTGAAGAAAATACTATTTCCAATTAGTGGAGCTATTGTTTTTATACTATGTTGCTTACTTTTGGGGTTCCTTTGGAGACGAAATATACATGTGCAAAACTTTGATTTCTCAGAATCCATTTTTCAAAAGTTAGAGCACAAAAGGATCTCATTTCAAGAGCTTCACATAGCAACCAATGGATTCACCAGGAGCAACTTGTTGGGATCAAGTAGTTTTGGATCTGTTTATAAAGGAATTTTGAGTGATGGCACAATTGTTGCTGTGAAAGTTTTCCAATTGCAAAATGACCAGGGTGAGAAGAGTTTCAAAGCAGAGTGTAGTGTCTTGCAAAAGATTCGACATCGAAATTTGGTGAGAATCATAACCTCCTGCTCCAACCTCCATTTCAAAGGTTTAGTGTTCCAATTTATGTCTAACGGAAGCCTAGAGAAGCATTTGTATCATGACAGAGATGACAACAATGATGAGGAAGTGTGTGGCCTGGGATTAAAAACACTACTAAACATTGCCATTGATGTGGCCCATGCCATTGAATATCTACATCATTATTCTCATGTGCAAGTAGTGCATTGTGATATAAAACCCAGCAATGTGTTGTTGGATGAAGACATGATAGGCCATGTGACAGATTTTGGTCTTGCAAGATTGATTGGTGCAGACTTTGGTGATTCACTTACTTCAACACTTACTTTGAAAGGGTCTATGGGTTACATTGCTCCAGAGTATGGATTGGGTGAGAGAGTTTCTACCAAAGGAGATGTTTACAGCTATGGCATTATGTTATTGGAAATGCTTACCAGAAAACGACCAACCAACAACATGTTTATTGGAGACCTAAACATGCACAAGTGGGTGAGCCTAGCATTTCCAAACAAAGTGAAGGAGGTGATTGACAACAATCTGTTTAGTGCACAGGATGGAGCTGGATTTGAAGAAGATAATATACACAATTGTCTACTTTCTTTGCTACGAGTTGGTTTACTTTGTTCAAAAGATTCACCTGATGAACGGCCAACTATGAGAGATGTGGTAATAGAGTTGGAAAATCTCAAAGAAGATTTGGTGGCAAAAACAATTGCTATAAGAAGAAGTATATCCAATTTACTTGGCCATACAAATGCACCAAATATAAATTCCATAACACCAAATGACCAAAGTTCTTCTACATTCTAGTGTGACAATTATTTTTGCAGGTTTAATCCCAAGACAGTCCCAGGAGCTTCGAACAATTAGTCTTTTCTCAAAGAAATTTCAATGCCCTGTTAATGTCAAATTTGGGGTTCTTCAGTGGACGTTTTTTCATTGCTCTCTGAAATGGAAAAAGGCGTACTCTTTCATCGATCATGATCAGTGACTTCCCAATAATGTAGAGGCGGCTCTGCTTTGGGTACAGGAAAACT

Ace file of the UniGene sp_v1.1_unigene29205

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74)	-	-	42%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	36%
Blast2go	protein	-	-	59%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	59%
Blast2go	Leucine-rich repeat	IPR001611	-	59%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	59%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	59%
Blast2go	Protein kinase-like domain	IPR011009	-	59%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	59%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 45 aas, your sequence is shorter than subject: 782 - 998

Fln protein: NQLTGNIPYTIGNCSKLQILILAYNKLIGSVPLELGKLSLLEKLGLHHNELESGSATTMPFLESLTNCSHLQKLSLGYNKLSGVFPLSIGRLSTNLSFFSLANNKIQGNIPPHIGNLSSLIFLNLSGNFLNGTIPPFGNLTKLERLDIGNNELEGNISNQFEQLQGLGLLDISRNKLTGKIPNSLPPSKQLRRILLHDNKLSGSIPAILGNYINLELLDLSHNMLTGSIPREIAKLSNLQFYLNLSWNLLDGSLPMEISKIAMAQAIDISSNHLTGPIPPTLGSCSELQTLNLSRNAFQGSIPDSLGTLLSLVNLDLSFNSLSGPIPVTLQKLKMLQCLNLSFNNLTGEIPKAGFFANQTIIMSFIGNPGLCGPKVFMLPACPTSRSHFALVKKILFPISGAIVFILCCLLLGFLWRRNIHVQNFDFSESIFQKLEHKRISFQELHIATNGFTRSNLLGSSSFGSVYKGILSDGTIVAVKVFQLQNDQGEKSFKAECSVLQKIRHRNLVRIITSCSNLHFKGLVFQFMSNGSLEKHLYHDRDDNNDEEVCGLGLKTLLNIAIDVAHAIEYLHHYSHVQVVHCDIKPSNVLLDEDMIGHVTDFGLARLIGADFGDSLTSTLTLKGSMGYIAPEYGLGERVSTKGDVYSYGIMLLEMLTRKRPTNNMFIGDLNMHKWVSLAFPNKVKEVIDNNLFSAQDGAGFEEDNIHNCLLSLLRVGLLCSKDSPDERPTMRDVVIELENLKEDLVAKTIAIRRSISNLLGHTNAPNINSITPNDQSSSTF*

Protein Length: 783

Fln nts: AAATCAACTTACTGGGAACATACCATATACAATTGGGAATTGTTCCAAACTCCAGATACTCATTCTAGCCTACAACAAATTGATTGGGAGTGTTCCCCTAGAGTTGGGTAAACTATCCCTCCTTGAAAAATTAGGCTTACATCATAATGAGCTTGAGAGTGGTAGCGCCACAACCATGCCTTTTCTTGAATCTCTTACCAATTGTTCTCACTTACAAAAACTATCATTGGGTTACAATAAACTAAGTGGTGTCTTTCCCCTTTCCATAGGGAGACTTTCTACCAATTTGTCTTTCTTTTCATTAGCAAACAACAAAATACAAGGAAACATTCCTCCACATATTGGCAATCTTAGTAGCCTAATCTTTCTAAATTTAAGTGGAAACTTTTTAAATGGTACCATTCCACCATTTGGAAACCTTACAAAATTAGAAAGATTGGACATAGGAAACAATGAATTAGAAGGTAACATCTCCAATCAATTTGAACAATTACAAGGACTTGGTCTCTTGGACATTAGTAGAAACAAACTCACTGGAAAGATTCCCAATTCCCTTCCACCGTCTAAACAACTAAGAAGAATCTTACTTCATGACAACAAGTTATCAGGGAGCATACCTGCCATCTTAGGAAACTACATAAATTTGGAATTGCTTGACCTGTCTCACAATATGCTCACCGGAAGCATTCCACGAGAAATTGCTAAACTTTCTAATCTACAATTCTATTTGAACTTGTCATGGAATTTATTAGATGGCTCGTTGCCCATGGAGATTAGTAAAATTGCAATGGCTCAAGCTATAGACATTTCATCCAATCACTTGACTGGGCCCATTCCACCTACACTTGGAAGTTGCAGTGAACTACAAACATTGAATTTATCTAGAAATGCCTTCCAAGGCTCTATTCCAGATTCACTTGGAACTTTACTAAGTCTTGTGAACCTAGATCTCTCTTTCAACTCCTTATCAGGTCCAATACCAGTGACTCTCCAAAAATTGAAAATGCTTCAGTGCTTGAATTTGTCTTTCAACAATCTCACAGGGGAAATCCCAAAAGCGGGATTTTTTGCAAATCAAACAATTATCATGTCCTTCATTGGGAATCCAGGCCTTTGTGGACCAAAAGTATTCATGTTACCTGCATGTCCAACATCAAGAAGTCATTTTGCACTTGTGAAGAAAATACTATTTCCAATTAGTGGAGCTATTGTTTTTATACTATGTTGCTTACTTTTGGGGTTCCTTTGGAGACGAAATATACATGTGCAAAACTTTGATTTCTCAGAATCCATTTTTCAAAAGTTAGAGCACAAAAGGATCTCATTTCAAGAGCTTCACATAGCAACCAATGGATTCACCAGGAGCAACTTGTTGGGATCAAGTAGTTTTGGATCTGTTTATAAAGGAATTTTGAGTGATGGCACAATTGTTGCTGTGAAAGTTTTCCAATTGCAAAATGACCAGGGTGAGAAGAGTTTCAAAGCAGAGTGTAGTGTCTTGCAAAAGATTCGACATCGAAATTTGGTGAGAATCATAACCTCCTGCTCCAACCTCCATTTCAAAGGTTTAGTGTTCCAATTTATGTCTAACGGAAGCCTAGAGAAGCATTTGTATCATGACAGAGATGACAACAATGATGAGGAAGTGTGTGGCCTGGGATTAAAAACACTACTAAACATTGCCATTGATGTGGCCCATGCCATTGAATATCTACATCATTATTCTCATGTGCAAGTAGTGCATTGTGATATAAAACCCAGCAATGTGTTGTTGGATGAAGACATGATAGGCCATGTGACAGATTTTGGTCTTGCAAGATTGATTGGTGCAGACTTTGGTGATTCACTTACTTCAACACTTACTTTGAAAGGGTCTATGGGTTACATTGCTCCAGAGTATGGATTGGGTGAGAGAGTTTCTACCAAAGGAGATGTTTACAGCTATGGCATTATGTTATTGGAAATGCTTACCAGAAAACGACCAACCAACAACATGTTTATTGGAGACCTAAACATGCACAAGTGGGTGAGCCTAGCATTTCCAAACAAAGTGAAGGAGGTGATTGACAACAATCTGTTTAGTGCACAGGATGGAGCTGGATTTGAAGAAGATAATATACACAATTGTCTACTTTCTTTGCTACGAGTTGGTTTACTTTGTTCAAAAGATTCACCTGATGAACGGCCAACTATGAGAGATGTGGTAATAGAGTTGGAAAATCTCAAAGAAGATTTGGTGGCAAAAACAATTGCTATAAGAAGAAGTATATCCAATTTACTTGGCCATACAAATGCACCAAATATAAATTCCATAACACCAAATGACCAAAGTTCTTCTACATTCTAGTGTGACAATTATTTTTGCAGGTTTAATCCCAAGACAGTCCCAGGAGCTTCGAACAATTAGTCTTTTCTCAAAGAAATTTCAATGCCCTGTTAATGTCAAATTTGGGGTTCTTCAGTGGACGTTTTTTCATTGCTCTCTGAAATGGAAAAAGGCGTACTCTTTCATCGATCATGATCAGTGACTTCCCAATAATGTAGAGGCGGCTCTGCTTTGGGTACAGGAAAACT

Fln Alignment:

sp_v1.1_unigene29205___NQLTGNIPYTIGNCSKLQILILAYNKLIGSVPXXXXXXXXXXXXXXHHNELESGSATTMPFLESLTNCSHLQKLSLGYNKLSGVFPLSIGRLSTNLSFFSLANNKIQGNIPPHIGNLSSLIFLNLSGNFLNGTIP-PFGNLTKLERLDIGNNELEGNISNQFEQLQGLGLLDISRNKLTGKIPNSLPPSKQLRRILLHDNKLSGSIPAILGNYINLELLDLSHNMLTGSIPREIAKLSNLQFYLNLSWNLLDGSLPMEISKIAMAQAIDISSNHLTGPIPPTLGSCSELQTLNLSRNAFQGSIPDSLGTLLSLVNLDLSFNSLSGPIPVTLQKLKMLQCLNLSFNNLTGEI
Q19AV8_______________NYVNGSIPADLRRCRKLGYLDLSQSLIVGGLP-----DFISELSRLRHLDL-SGNNLSGPIPPAFGQLLELQVLNLVFNLLNTTIPPFLGNL-PNLLQFNLAYNPFTGTVPPELGNLTKLQNLWLAGCNLVGEIPETLGNLAELTNLDLSINRLSGSIPESITKLDKVAQIELYQNLLSGPIPVAMGELKALKRFDASMNMLNGSIPAGLGS-LNLESLNLYQNDLVGEIPPGLGSFASLT-ELKLFSNRLTGRLPESLGRYSDLQALDIADNLLSGSLPPDLCKNKKLEILSIFNNVFAGNIPESLGTCTSLNRVRLGGNKFNGSVPSSFWGLPHISLLELKDNNFEGLI

SNPs (tot: 109)

Position	A %	C %	G %	T %	Probability
1118		80		20	0.995493
1120	20		80		0.995493
1137	80		20		0.995493
1199		75		25	0.996473
1210	25		25	50	0.995533
1218		75		25	0.996473
1267	66		33		0.997452
1281	66		33		0.997455
1290	66		33		0.997452
1293		33		66	0.997452
1298	33		66		0.997452
1301		33		66	0.997452
1316		16		83	0.994512
1329	16		83		0.994512
1345		33	66		1.0
1359		83		16	0.994512
1372		62	37		1.0
1375	11	11	66	11	0.944822
1376		11	88		0.923564
1377	88		11		0.923564
1408		87		12	0.992554
1409	25			75	1.0
1428	87			12	0.992554
1460	12	87			0.992554
1478	12		87		0.992554
1480		12	87		0.992554
1481		12		87	0.992554
1484	12		87		0.992554
1498		87		12	0.992554
1521	66		33		1.0
1589		12		87	0.992554
1600	12		87		0.992554
1606		87		12	0.992554
1618	12		87		0.992554
1635	85		14		0.993533
1637	87		12		0.992554
1638	12		87		0.992554
1640	50		50		1.0
1660	57			42	1.0
1672	25		62	12	1.0
1678	66		33		1.0
1720			37	62	1.0
1750	90			10	0.90298
1751	90	10			0.90298
1753		10		90	0.90298
1768		10		90	0.90298
1770			11	88	0.991528
1771	88		11		0.991528
1772	88	11			0.991528
1773	88	11			0.991528
1779	42		57		1.0
1834	87		12		0.992554
1854		28		71	1.0
1874	80			20	0.995493
1919	83			16	0.994512
1942	83		16		0.994512
1974	40		60		1.0
1975		16		83	0.994512
2021		20		80	0.995493
2029		80	20		0.995493
2032	80		20		0.995493
2034		80		20	0.995493
2043	20		80		0.995493
2071		16	83		0.994512
2082			60	40	1.0
2084		40		60	1.0
2095		83		16	0.994512
2119	16		83		0.994512
2134	66		33		1.0
2161		90		10	0.90298
2188	14		85		0.993533
2194		66		33	1.0
2210		57	42		1.0
2214	33		66		1.0
2218	28		71		1.0
2231	57			42	1.0
2235	14		85		0.993533
2257	14		85		0.993533
2258	50		50		1.0
2259	16			83	0.994512
2260	16		83		0.994512
2262		83	16		0.994512
2263	83			16	0.994512
2269	66	16	16		0.988813
2273	50		50		1.0
2346	75		25		0.996473
2352	25		75		0.996473
2370		50	50		1.0
2374		75	25		0.996473
2375	75			25	0.996473
2376	75		25		0.996473
2378			25	75	0.996474
2379	75		25		0.996473
2380		25		75	0.996477
2381	25			75	0.996478
2382	25			75	0.996478
2386		66		33	0.997452
2388	33		66		0.997452
2391	33			66	0.997453
2392			33	66	0.997453
2396	33	66			0.997452
2397	33	66			0.997452
2398		66		33	0.997452
2400	66			33	0.997452
2401			66	33	0.997452
2402	66			33	0.997452
2405	33		66		0.997452
2408	33	66			0.997452
2409		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain