SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29200

Length: 243 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene29200
CGTCGTGACCTTGGCTGTCACTCATTGGAGTTAATAGGCTGACAAAGAATTTTCAGATGGCAAGGTTAGATGGAGCTTTCAGAGGCACTGATATTGAAGCTGTTGAGATGTCTAGGTTCCTCATGAAGAATGATGGTCTCTTTGTTGGGAGTTCCTCTGCTATGAACTGTGTTGGGGCAGTCCGTGTAGCAAGCTTGTTAGGTCCTGGCCACACGATTGTGACCATCCTGTGTGACAGTGGAA

Ace file of the UniGene sp_v1.1_unigene29200

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cysteine synthase n=3 Tax=Arabidopsis RepID=Q9LG24_ARATH	-	-	4.0e-30	89%
FL-Next	sp=Cysteine synthase; Ricinus communis (Castor bean).	-	-	0.0	84%
Blast2go	cysteine synthase	-	-	7.65742e-30	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular amino acid metabolic process	GO:0006520	Biological Process	7.65742e-30	90%
Blast2go	catalytic activity	GO:0003824	Molecular Function	7.65742e-30	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	7.65742e-30	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9S9T9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 31 aas, your sequence is shorter than subject: 80 - 297

Fln protein: S*PWLSLIGVNRLTKNFQMARLDGAFRGTDIEAVEMSRFLMKNDGLFVGSSSAMNCVGAVRVASLLGPGHTIVTILCDSG

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGAGTTAATAGGCTGACAAAGAATTTTCAGATGGCAAGGTTAGATGGAGCTTTCAGAGGCACTGATATTGAAGCTGTTGAGATGTCTAGGTTCCTCATGAAGAATGATGGTCTCTTTGTTGGGAGTTCCTCTGCTATGAACTGTGTTGGGGCAGTCCGTGTAGCAAGCTTGTTAGGTCCTGGCCACACGATTGTGACCATCCTGTGTGACAGTGGAA

Fln Alignment:

sp_v1.1_unigene29200___IGVNRLTKNFQMARLDGAFRGTDIEAVEMSRFLMKNDGLFVGSSSAMNCVGAVRVASLLGPGHTIVTILCDSG
B9S9T9_______________IGINRITQNFMMAKLDGAFRGTDKEAVEMSRFLLKNDGLFLGSSSAMNCVGAVRVAQAIGPGHTIVTILCDSG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
143		75		25	0.996473
178			83	16	0.994523

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain