SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29180

Length: 2929 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene29180
CGTCGTGACCTTGGCTGTCACTCATCTCCCTCGGCTCCGGTTACTATAGAAGGGGCCAGTACAACCTACTGCCCTTCACGGCCATTTACTTCTTTGGAGTTATGTCGCACTGCGAAATCAGGATTATCAAAGCTTGAGCAGACAGCTGGTTTTTCTGCTGCTTCAAACTTGAAGATAAAACAAACAATACCTGGCATTGCTAGGTATGAAACCACAGTAGCACAGCAGGAAACGGCAGACGAATCGGTTGAAAAACATGAGTATCAAGCAGAGGTTAGTCGTCTTTTGGATTTGATAGTACACAGCTTGTACAGTCACAAGGAAGTATTCCTCCGTGAGTTAGTCAGTAATGCTAGTGATGCACTGGATAAATTGCGCTTCTTAAGCGTGACAGATTCAAGTCTTCTTGGTAATGGAGGTGAATTAGAGATTCGTATCAAGGCAGACAAGGAGAATGGAACAATTACCTTGATTGATACTGGTATTGGAATGACAAAAGAAGAACTGGTGGATTGCTTGGGAACTATAGCTCAGAGTGGAACCGCTAAGTTTTTGAAAGCTTTGAGGGATAGCAAGGAAGCTGGTTCTGACAGCAATTTGATTGGTCAATTTGGTGTTGGGTTTTATTCAGCTTTTCTGGTCTCTGATCGGATAGTTGTCTCAACAAAGAGCCCAAAGTCTGACAAGCAATACGTGTGGGAAGGAGAAGCAGACAACAACTCATACGTCATAAGGGAGGAGACAAACCCTGATAGTTTGCTTCCAAGAGGAACCAGCATTACTCTACATTTAAAGACTGAAGACAAGCTCGAGTACTCTGATCCTGAAAGGATTAAGAATCTTGTTAAAAATTATTCACAATTTGTTTCCTTCCCAATATATGTATGGGAGGAGAAGTCTCAGACTGTAGAGGTTGAGGATGACTCAGCTGAAGCAAAAGAGGGTGAAACAGCAAAACCAGAGGGCCAGAAAAAGAAAACTAAGACAGTCACAGAGAAATACTGGGATTGGGAGTTGGCCAATGAGACTCAACCTATTTGGATGCGCAACTCAAAAGAAGTGACTGTGGAGGAATACAATGAATTTTACAAGAAAACTTTCAATGAATATATGGATCCTCTTGCATGCTCTCACTTCACTACAGAGGGTGAAGTTGAGTTCAGAAGTATTCTGTATGTACCTGCTATTACTCCCATGGGCAGGGAAGACATTGTAAATCCCAAGACAAAGAATATCCGTCTATATGTGAAACGTGTGTTTATTTCAGATGATTTTGATGGGGAATTGTTTCCACGCTATTTAAGCTTTGTCAAAGGTGTTGTGGATTCAAATGACTTGCCTCTTAATGTTTCTAGGGAGATCCTTCAGGAAAGCCGCATTGTCCGAGTGATGAGGAAGCGGCTTCTTAAAAAGACATTTGAAATGATCTTGGGTGTCTCACTTAGTGAAAATCAAGAGGATTATAGAAAATTTTGGGATAACTTTGGAAAGAATATGAAATTGGGTGTCATTGAGGACCATGCAAATCACAAGAAATTGGCTCCTCTCCTTCGCTTCTATTCATCGTTTAATGAGGACGAGTTAGTTAGCTTGGACAATTACATTGATAGTATGAAAGAAGGCCAGAAGGCTATTTATTATATTGCTGCAGACAGCATCACCAGTGCGAGAAATGCACCCTTCTTAGAAAAACTTATAGAGAAAGAGTATGAGGTGTTGTTCCTTATTGATCCAATTGACGAGGTCGCCATTCAAAACCTTAAGTCTTATAAAGACAAGCAGTTTGTGGATATCACCAAAGAAGACTTGGATTTGGGCGATCAAGATGAAGCAAAGGAAAAAGAAGTCAAAAAGGAATATACACCTGTCTGTGAGTGGATGAAGAATCATTTAGGAGAGCAAGTGGCAAAGGTTCAGATATCAAATAGACTAAGCTCTTCACCATGTGTGCTTGTCTCAGGAAAGTTTGGATGGTCAGCAAACATGGAAAGGATCATGAAAGCTCAATCTCTTGGGGATACATCTAGCATGTCGTTCATGCATGGAAGAAGAATCTTGGAGATCAACCCAGATCATCCCATTATCCAGAGTTTGAACGCTGCTTGCAAAGAGGATCCCCAGAATCCTGATGCCTTGAGAGCAATCGATCTATTATATAATACGGCTCTAATTTCCAGTGGTTATACTCCTGAGAATCCTGCTGAAGTGGGTGGAAAGATTTACAATATGATGGATGCCGCACTTGCTGGAAAATGGAGAGCTCCAAGCTCGGAAGCTGCTAATGTGGATGCACTGCAACCGTCCAGTGAAGTTGTTGAGCCTGCTGAGGCAGAGATTGTCCAGCCTGTTGAGGCAGAGGTTGTTGACCCTGCTGAAGTGAAAGTTGAGGGTAGAGCCTCAAACAACTAGTCTCTTTGGAGCCTTATTAAGGGGATATGGTCAGGGCTCACATAGTTTGTGAAAATTGATTGTATACAAGGTGTAGGAGGCTAAATGAGTTTTGATCTTTGATTGAGAGTGTTTAACTGTATATTGCAGACATTTTTGAAATCATCTCTCCATTTCGTCTCTAGGCAGGTTACAATTTTAGAAGCATACTCGTCTCTAGGCAGATCTCTAGGCTGGTTACAACTTTAGAAGCATACAAGTAGTTTCTATAAGAAAGCAAATTAGCTGGGTTTTTGTGATAGGAATACATGTCTTGTGTTTTGAGCTTTGAACACTGGTATCGTGTTTTGAGCCTAAATTGGAAATTGATCTTATGGCTGAAATTTGGTATGAACGTTGCTGTTACCTGGATCGAACTGCTTTGAGCCTGAATTGGAAAACTGATCTAATGACTGAAATCTGGTATGAGCGTTGCTGTTATCTGGACATCATATTCCATTGTTACAAGCTTAAATTGAAACACCGATCTTATTGAAATTTC

Ace file of the UniGene sp_v1.1_unigene29180

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	heat shock protein, putative; K04079 molecular chaperone HtpG	-	-	69%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	44%
Blast2go	heat shock protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	85%
Blast2go	response to salt stress	GO:0009651	Biological Process	85%
Blast2go	response to chlorate	GO:0010157	Biological Process	85%
Blast2go	response to heat	GO:0009408	Biological Process	85%
Blast2go	de-etiolation	GO:0009704	Biological Process	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein Hsp90	IPR001404	-	85%
Blast2go	ATPase-like, ATP-binding domain	IPR003594	-	85%
Blast2go	Heat shock protein Hsp90, conserved site	IPR019805	-	85%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	85%
Blast2go	Heat shock protein Hsp90, N-terminal	IPR020575	-	85%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A7YAU9

Fln msg: W2: There is no M at the beginning, your sequence is shorter than subject: 803 - 834

Fln protein: RRDLGCHSSPSAPVTIEGASTTYCPSRPFTSLELCRTAKSGLSKLEQTAGFSAASNLKIKQTIPGIARYETTVAQQETADESVEKHEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDSSLLGNGGELEIRIKADKENGTITLIDTGIGMTKEELVDCLGTIAQSGTAKFLKALRDSKEAGSDSNLIGQFGVGFYSAFLVSDRIVVSTKSPKSDKQYVWEGEADNNSYVIREETNPDSLLPRGTSITLHLKTEDKLEYSDPERIKNLVKNYSQFVSFPIYVWEEKSQTVEVEDDSAEAKEGETAKPEGQKKKTKTVTEKYWDWELANETQPIWMRNSKEVTVEEYNEFYKKTFNEYMDPLACSHFTTEGEVEFRSILYVPAITPMGREDIVNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRVMRKRLLKKTFEMILGVSLSENQEDYRKFWDNFGKNMKLGVIEDHANHKKLAPLLRFYSSFNEDELVSLDNYIDSMKEGQKAIYYIAADSITSARNAPFLEKLIEKEYEVLFLIDPIDEVAIQNLKSYKDKQFVDITKEDLDLGDQDEAKEKEVKKEYTPVCEWMKNHLGEQVAKVQISNRLSSSPCVLVSGKFGWSANMERIMKAQSLGDTSSMSFMHGRRILEINPDHPIIQSLNAACKEDPQNPDALRAIDLLYNTALISSGYTPENPAEVGGKIYNMMDAALAGKWRAPSSEAANVDALQPSSEVVEPAEAEIVQPVEAEVVDPAEVKVEGRASNN*

Protein Length: 804

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCCCTCGGCTCCGGTTACTATAGAAGGGGCCAGTACAACCTACTGCCCTTCACGGCCATTTACTTCTTTGGAGTTATGTCGCACTGCGAAATCAGGATTATCAAAGCTTGAGCAGACAGCTGGTTTTTCTGCTGCTTCAAACTTGAAGATAAAACAAACAATACCTGGCATTGCTAGGTATGAAACCACAGTAGCACAGCAGGAAACGGCAGACGAATCGGTTGAAAAACATGAGTATCAAGCAGAGGTTAGTCGTCTTTTGGATTTGATAGTACACAGCTTGTACAGTCACAAGGAAGTATTCCTCCGTGAGTTAGTCAGTAATGCTAGTGATGCACTGGATAAATTGCGCTTCTTAAGCGTGACAGATTCAAGTCTTCTTGGTAATGGAGGTGAATTAGAGATTCGTATCAAGGCAGACAAGGAGAATGGAACAATTACCTTGATTGATACTGGTATTGGAATGACAAAAGAAGAACTGGTGGATTGCTTGGGAACTATAGCTCAGAGTGGAACCGCTAAGTTTTTGAAAGCTTTGAGGGATAGCAAGGAAGCTGGTTCTGACAGCAATTTGATTGGTCAATTTGGTGTTGGGTTTTATTCAGCTTTTCTGGTCTCTGATCGGATAGTTGTCTCAACAAAGAGCCCAAAGTCTGACAAGCAATACGTGTGGGAAGGAGAAGCAGACAACAACTCATACGTCATAAGGGAGGAGACAAACCCTGATAGTTTGCTTCCAAGAGGAACCAGCATTACTCTACATTTAAAGACTGAAGACAAGCTCGAGTACTCTGATCCTGAAAGGATTAAGAATCTTGTTAAAAATTATTCACAATTTGTTTCCTTCCCAATATATGTATGGGAGGAGAAGTCTCAGACTGTAGAGGTTGAGGATGACTCAGCTGAAGCAAAAGAGGGTGAAACAGCAAAACCAGAGGGCCAGAAAAAGAAAACTAAGACAGTCACAGAGAAATACTGGGATTGGGAGTTGGCCAATGAGACTCAACCTATTTGGATGCGCAACTCAAAAGAAGTGACTGTGGAGGAATACAATGAATTTTACAAGAAAACTTTCAATGAATATATGGATCCTCTTGCATGCTCTCACTTCACTACAGAGGGTGAAGTTGAGTTCAGAAGTATTCTGTATGTACCTGCTATTACTCCCATGGGCAGGGAAGACATTGTAAATCCCAAGACAAAGAATATCCGTCTATATGTGAAACGTGTGTTTATTTCAGATGATTTTGATGGGGAATTGTTTCCACGCTATTTAAGCTTTGTCAAAGGTGTTGTGGATTCAAATGACTTGCCTCTTAATGTTTCTAGGGAGATCCTTCAGGAAAGCCGCATTGTCCGAGTGATGAGGAAGCGGCTTCTTAAAAAGACATTTGAAATGATCTTGGGTGTCTCACTTAGTGAAAATCAAGAGGATTATAGAAAATTTTGGGATAACTTTGGAAAGAATATGAAATTGGGTGTCATTGAGGACCATGCAAATCACAAGAAATTGGCTCCTCTCCTTCGCTTCTATTCATCGTTTAATGAGGACGAGTTAGTTAGCTTGGACAATTACATTGATAGTATGAAAGAAGGCCAGAAGGCTATTTATTATATTGCTGCAGACAGCATCACCAGTGCGAGAAATGCACCCTTCTTAGAAAAACTTATAGAGAAAGAGTATGAGGTGTTGTTCCTTATTGATCCAATTGACGAGGTCGCCATTCAAAACCTTAAGTCTTATAAAGACAAGCAGTTTGTGGATATCACCAAAGAAGACTTGGATTTGGGCGATCAAGATGAAGCAAAGGAAAAAGAAGTCAAAAAGGAATATACACCTGTCTGTGAGTGGATGAAGAATCATTTAGGAGAGCAAGTGGCAAAGGTTCAGATATCAAATAGACTAAGCTCTTCACCATGTGTGCTTGTCTCAGGAAAGTTTGGATGGTCAGCAAACATGGAAAGGATCATGAAAGCTCAATCTCTTGGGGATACATCTAGCATGTCGTTCATGCATGGAAGAAGAATCTTGGAGATCAACCCAGATCATCCCATTATCCAGAGTTTGAACGCTGCTTGCAAAGAGGATCCCCAGAATCCTGATGCCTTGAGAGCAATCGATCTATTATATAATACGGCTCTAATTTCCAGTGGTTATACTCCTGAGAATCCTGCTGAAGTGGGTGGAAAGATTTACAATATGATGGATGCCGCACTTGCTGGAAAATGGAGAGCTCCAAGCTCGGAAGCTGCTAATGTGGATGCACTGCAACCGTCCAGTGAAGTTGTTGAGCCTGCTGAGGCAGAGATTGTCCAGCCTGTTGAGGCAGAGGTTGTTGACCCTGCTGAAGTGAAAGTTGAGGGTAGAGCCTCAAACAACTAG___TCTCTTTGGAGCCTTATTAAGGGGATATGGTCAGGGCTCACATAGTTTGTGAAAATTGATTGTATACAAGGTGTAGGAGGCTAAATGAGTTTTGATCTTTGATTGAGAGTGTTTAACTGTATATTGCAGACATTTTTGAAATCATCTCTCCATTTCGTCTCTAGGCAGGTTACAATTTTAGAAGCATACTCGTCTCTAGGCAGATCTCTAGGCTGGTTACAACTTTAGAAGCATACAAGTAGTTTCTATAAGAAAGCAAATTAGCTGGGTTTTTGTGATAGGAATACATGTCTTGTGTTTTGAGCTTTGAACACTGGTATCGTGTTTTGAGCCTAAATTGGAAATTGATCTTATGGCTGAAATTTGGTATGAACGTTGCTGTTACCTGGATCGAACTGCTTTGAGCCTGAATTGGAAAACTGATCTAATGACTGAAATCTGGTATGAGCGTTGCTGTTATCTGGACATCATATTCCATTGTTACAAGCTTAAATTGAAACACCGATCTTATTGAAATTTC

Fln Alignment:

sp_v1.1_unigene29180___IARYETTVAQQETADESVEKHEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDSSLLGNGGE--LEIRIKADKENGTITLIDTGIGMTKEELVDCLGTIAQSGTAKFLKALRDSKEAGSDSNLIGQFGVGFYSAFLVSDRIVVSTKSPKSDKQYVWEGEADNNSYVIREETNPDSLLPRGTSITLHLKTEDKLEYSDPERIKNLVKNYSQFVSFPIYVWEEKSQTVEVEDD-----SAEAKEGETAKPEGQ--------KKKTKTVTEKYWDWELANETQPIWMRNSKEVTVEEYNEFYKKTFNEYMD--PLACSHFTTEGEVEFRSILYVPAITPMGREDIVNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRVMRKRLLKKTFEMILGVSL---------------SENQED------YRKFWDNFGKNMKLGVIEDHANHKKLAPLLRFYSSFNEDELVSLDNYIDSMKEGQKAIYYIAADSITSARNAPFLEKLIEKEYEVLFLIDPIDEVAIQNLKSYKDKQFVDITKEDLDLGDQDEAKEKEVKKEYTPVCEWMKNHL-GEQVAKVQISNRLSSSPCVLVSGKFGWSANMERIMKAQSLGDTSSMSFMHGRRILEINPDHPIIQSLNAACKEDPQNPDALRAIDLLYNTALISSGYTPENPAEVGGKIYNMMDAALAGKWRAPSSEAANVDALQPSSEVVEPAEAE
A7YAU9_______________VAQRESESISRKTLRANAQKFEFQAEVSRLMDILINSLYSNKDIFLRELISNASDALDKIRFMALTDKNVLGEGDNTRLDIKIKLDKENKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFLEQM----QKGGDLNLIGQLGVGFYSVYLVADHVEVISKN-NDDKQYIWESKADG-AFAVSEDTENEPL-GRGTEIRLHLKDEAS-EYLDETKLKDLVKKYSEFINFPIYLWASKEVDVEVPADEESESSEEEEKSESSSDEEESEAEETESKSKTKTVKETTYEWELLNDVKAVWLRNPKEVTDEEYAKFYHSLAKDFSEEKPLAWSHFTAEGDVEFKSILFIPPKAPHDLYESYCNAKANIKLYVRRVFISDEFE-EFLPKYLGFLMGIVNSDTLPLNVSREMLQQHNSLNTIKKKLIRKALDMIRRIAEEDLDESDAKGKTDAESESEPDTEKKGKYVKFWNEFGKSIKLGIIEDASNRNHLAKLLRFESTKSGSKLASLDQYISRMKPGQKDIYYITGSSKEQLEKSPFLEKLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKIG--KDSKDKEIKDSFKELTNWWKDVLSSENVDSVKISNRLDNTPGVVVTSKYGWSANMERIMQSQTLSDANRQSYMRGKRVLEINPKHPIIKELRERVTQNPEEENIKQTARLIYQTALMESGFILNDPKEFATSIYSTIKTTLNVN---PDATVEEEDETEEEVEVETKEEIE

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1066	85		14		0.993533
1286			85	14	0.993533
2186	87		12		0.992554
2467			8	92	0.999718
2473	8		92		0.999718
2653	93		6		0.999153
2825	10			90	0.90298
2826	10			90	0.90298
2827	10		90		0.90298
2828	10	90			0.90298
2829	10			90	0.90298
2830	10		90		0.90298
2834		77		22	0.999999
2857		60	40		1.0
2867	60			40	1.0
2875	20	80			0.995493
2917	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain