SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29175

Length: 1098 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29175

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PGR5-LIKE A	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	pgr5-like a	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	photosynthetic electron transport in photosystem I	GO:0009773	Biological Process	0.0	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWM0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 210 - 350

Fln protein: LVIHVAWTTGRE*GT*LSMVWCGLDVEEEQFEPHHLCIIFTLLLLFQTILSPLRSRKVYSDLTVDYFKMFLLNVPAAVVALTLVFFLDDITGFEITYLLELPEPYSFIVTWFLVLPGTYLIAQAITNVILKDFLILKGPCPNCGTENISFFGTILTVPSGGPLNEVKCENCGTALMYNSDTRLITLAEKKQDGSQDSKPKETATTASAP*

Protein Length: 211

Fln nts: CTTGTCATCCACGTGGCATGGACGACTGGCAGAGAGTAAGGGACTTGACTAAGTATGGTATGGTGTGGTCTGGATGTTGAAGAAGAACAATTTGAACCGCATCATCTCTGTATAATCTTTACTCTGTTACTGTTATTCCAAACAATTTTGAGTCCTCTCCGCAGTAGAAAAGTCTACAGTGACTTGACTGTGGATTATTTTAAAATGTTCTTGCTGAATGTGCCAGCTGCTGTTGTTGCTCTGACTTTGGTTTTCTTTCTAGATGACATTACTGGGTTTGAAATTACATACCTATTAGAGCTGCCTGAACCATACAGTTTTATCGTCACCTGGTTTCTCGTTCTACCTGGAACATATTTAATAGCACAGGCAATCACTAATGTCATTCTGAAAGACTTCCTAATTTTAAAGGGACCATGTCCAAACTGTGGGACAGAAAATATTTCCTTTTTTGGCACTATACTAACTGTGCCTAGTGGTGGCCCTTTGAATGAGGTTAAATGTGAGAATTGTGGCACTGCCCTGATGTATAACTCGGACACACGTTTAATAACATTGGCTGAAAAGAAGCAAGATGGTTCACAGGATTCAAAGCCTAAGGAGACAGCAACTACAGCTTCAGCACCCTAA___GAGTTAATGCCCTTAATTAAGAAAGAATGTGGCTGGGAAGGTCTATTATGATGGTTATTATTACTTCAATCTAGCAGCTAAGAAGATTGATGCCTGTCAAAATATCCAATACACTTTTCTTTGTGCAAATGCAGTCTGCAAATTTAGTTTTATCCATCAACTTATGGAAGAGATGTATATTAAATTGTTCAGTTCCAGCATCACTGAATTACTATGTATAGGTACCATAATTATATGGTAACAGTGCAGCCACTACCAGTTCTCTTCAATTGTATCATAAGATTCCCAGTGCCCACAACCAGATATTGCTTAACTGGACAGAGAAAGCTCCAGGAGAGCTGTTTATTATCATCTTTAATAGCATAGTATAAATGTTTGTAATCATGTCAAGCCTAGTCTAACATAATATAAATATATAGGTCACGCAAAAACTTGTAATTGATCTTCTAGCATTTATGTTCTATCTTG

Fln Alignment:

sp_v1.1_unigene29175___LRSRKVYSDLTVDYFKMFLLNVPAAVVALTLVFFLDDITGFEITYLLELPEPYSFIVTWFLVLPGTYLIAQAITNVILKDFLILKGPCPNCGTENISFFGTILTVPSGGPLNEVKCENCGTALMYNSDTRLITLAEKKQDGSQDSKPKETATTASAP
A9NWM0_______________LRSRNVYSDLTVDYFKMFLLNVPAAVVTLTLVFFLDDLTGFEITYLLELPEPYSFIFTWFIVLPATYLIARAITNAILKDFLILKGTCPNCGTENISFFGTILTVPSGGPLNEVKCENCGTALMYDSDTRLITLAEKKQEGSQDSKPKKTARTASAP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
792	66	33			0.997453
810			25	75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain