SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29169

Length: 2638 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene29169
ATGGGGGGATTTGTTTCTTTTGCCCTGAAGCTTCGTCTGTGGCCTGGGTAAGCGAGGAAAGTCTTGCGCTATCCCATTACCCTTACAATTCCCCTCTGATATTCTCCACTTCTCCCTCGCCCCGCCCCGTCCTGGATCCATTTGTACTCACTTTGCCCGCCATTTTCCTTATTTTTCTCCCAATATCTGCAGTTGTTTACGTTTTCCAGCTTCCCGTTTATCTTCTCTTCATAACTGCAAATTGCGCATAGATTTTGTCTTGGGATCAAATCCATCAGCTGCCGTTTTCGGCTCTCAAGTCAGGGATTGAGCCCTAGATACATCATCTACAACTTGCTGATCCGTGAGGCGGACGTTGTCTCAGGCTAGCTTTTTTCTAGGGCCTGGTATATGCTTTTAGGGATTAGGGTTTGGGCTATTGAGGGTTTGCGCGTATATCCCATATTCAGGGGTCTGCAGGGTTCGAAGCCTAGACGGTATTTGGGATATCTTCGAGGATGGCAGGAGAACGGCAGTATGGTGTTACAGAGCCCATATCAATGGCAGGACCCACTGAGGCTGATCTTCACAGGACTCGGCAGCTGGAAGAGTTTTTGATGAGCGCGGGCCTTTATGAGAGTCCAGAGGACGGTGCCTTAAGGAAGGAGGTTTTGGCCCAAATTGATAAGATTGCAAAAGCATGGGTCAAGAGGATAACTGATGAAAGAGGGTATGGTGAACAGTTGGTGGAAGAAGCAAATGCGAAAATTTATACATTTGGGTCTTATCGTCTATCGGTACATGGTCCAGGATCAGATCTAGACACGCTATGTGTAGGGCCTTGCTATGTGATTAGGGAGGAGGATTTTTTTGGCGTTTTGCATGATATGTTGGCCGAAATGCCGGAGGTCTCTGAACTCCATCCAGTCCCTGATGCACATGTGCCTGTAATGAAGTTTAAGTTCAGAGGGATATCTATTGATTTGATCTATGCTAGCATATCACTTTGGGTTGTTCCTGAAGATTTTGATATCTCTCAGGAGTCAGTACTTTGTGATGTTGATGAACAAAGTGCAAGGAGCCTCAATGGATGCAGAGTTGCAGATCAGATCTTGCGCCTTGTACCCAATGTTGACCATTTTCGTACAACACTCAGATGCATGAAGCTCTGGGCTAAAAGGCGCGGTCTCTACTCAAATGTCACGGGTTTTTTGGGTGGTGTGAATTGGGCTTTATTAGTTGCTCGGATTTGTCAACTGTATCCAAATGCAATTCCCAGTATGTTGGTTTCGCGATTCTTTAGAGTCTATACACAATGGCGATGGCCAAATCCTGTGATGCTTTGTTCGATAGAGGAGGGTACCCTGGGATTTCCTGTATGGGATCCACGAAAGAACCCTCGTGATCGGACACATCATATGCCCATTATAACTCCTGCTTATCCGTGCATGAACTCCAGTTATAATGTATCTACGAGTACACTTCGTGTCATGACAGAGCAATTTCAGACTGGAAACAAGATTTGTGAGGATATTGAGATGAACAAGGCAGGCTGGGATGCTCTTTTTGAGTCTTATCCTTTCTTTGAGTCATACAGAAATTATTTGCAAATAGACATCGTAGCTGCAGATCAAGATGATTTGAGGACGTGGAAAGGATGGGTTGAGTCACGATTAAGGCAACTTACTTTGAAGATTGAACGAGACACATTTGGGATGCTGCAGTGTCATCCTTACCCTTGTGAATATAGCAACACATCTAGTCAAGGATATCATTGTGCATATTTTATGGGTTTACAAAGGAAACAAGGAGTGCCAATACAGGAAGGTCAACAGTTTGACATACGTGGCACTGTAGACGAATTCAGGCACTCAGTGATCATGTATTTTCTTTGGAGACCAGGAATGGACATCTTTGTATCACATGTACGTCGAAAACAAATTCCACCATATGTCTTTCCTGGAGGGGTATTACCTAGTCGACCTGCAAGAGGTGCGAATCAAACAGTAAAGGCTTCTCCAGGGAGTAGTAGTGGAAATTCTGGCGATGAATCTCCAGAACAGTGCAGCAACAAGTCATCTGTGAAACTGAACAAGAGAAAACATGAAACTGCAGGGAACATTGACAAAGGAGACAAAAAACCTGCTATTAGGTCAAATCGTGTGGTAGCTTGTTTAGGAGCAATGGAAGGTAGTCCATGTCGAGGCAATATAGCTGAAGAAGCAGTTTCTCAGAGGGTAACTGATGGTGATGTACAAAGCCGTCTGAAACAAAAAGTTTCTAAGGTCCTGGGTAGTGCTAGAACCATAGACACAGTTTCTGGCAAAACTTCAACAGAAGGATCATTGGGAAATGTCACTGCAATGAGAGCTGAAAATTTCCAAAATGGGCGGAAGGTGGAGGTCTGGCATTAATAAATGGTGTTTTTGTTAATTTTTAAATCTAATTTAGATATTATGCTTTTTCTTCGAATTCTTTGCATATAAAGAAGAAACCCTGTAGCATGACATTTAGATTTGAGGATATCATAATATATTAATTTATTTTGGGGTTTCCATTGCCAAAAGAGTCAACAAGGTAATATTCCTTGCTGTTACTTCTTCTTGACTATGGCTAAATTTAGATGCAACTGTATGATTCTCTAGGGTTTCAATCTTAT

Ace file of the UniGene sp_v1.1_unigene29169

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os06g0558700 protein n=5 Tax=Oryza sativa RepID=C7J4C8_ORYSJ	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	npap (nuclear poly polymerase) nucleotidyltransferase protein binding	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	RNA polyadenylation	GO:0043631	Biological Process	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Blast2go	Nucleotidyl transferase domain	IPR002934	-	79%
Blast2go	Poly(A) polymerase, RNA-binding domain	IPR007010	-	79%
Blast2go	Poly(A) polymerase, central domain	IPR007012	-	79%
Blast2go	Nucleotidyltransferase, class I, C-terminal-like	IPR011068	-	79%
Blast2go	Poly(A) polymerase	IPR014492	-	79%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ25

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 50 aas, putative chimeric sequence, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 632 - 701

Fln protein: MAGERQYGVTEPISMAGPTEADLHRTRQLEEFLMSAGLYESPEDGALRKEVLAQIDKIAKAWVKRITDERGYGEQLVEEANAKIYTFGSYRLSVHGPGSDLDTLCVGPCYVIREEDFFGVLHDMLAEMPEVSELHPVPDAHVPVMKFKFRGISIDLIYASISLWVVPEDFDISQESVLCDVDEQSARSLNGCRVADQILRLVPNVDHFRTTLRCMKLWAKRRGLYSNVTGFLGGVNWALLVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEEGTLGFPVWDPRKNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMTEQFQTGNKICEDIEMNKAGWDALFESYPFFESYRNYLQIDIVAADQDDLRTWKGWVESRLRQLTLKIERDTFGMLQCHPYPCEYSNTSSQGYHCAYFMGLQRKQGVPIQEGQQFDIRGTVDEFRHSVIMYFLWRPGMDIFVSHVRRKQIPPYVFPGGVLPSRPARGANQTVKASPGSSSGNSGDESPEQCSNKSSVKLNKRKHETAGNIDKGDKKPAIRSNRVVACLGAMEGSPCRGNIAEEAVSQRVTDGDVQSRLKQKVSKVLGSARTIDTVSGKTSTEGSLGNVTAMRAENFQNGRKVEVWH*

Protein Length: 633

Fln nts: ATGGGGGGATTTGTTTCTTTTGCCCTGAAGCTTCGTCTGTGGCCTGGGTAAGCGAGGAAAGTCTTGCGCTATCCCATTACCCTTACAATTCCCCTCTGATATTCTCCACTTCTCCCTCGCCCCGCCCCGTCCTGGATCCATTTGTACTCACTTTGCCCGCCATTTTCCTTATTTTTCTCCCAATATCTGCAGTTGTTTACGTTTTCCAGCTTCCCGTTTATCTTCTCTTCATAACTGCAAATTGCGCATAGATTTTGTCTTGGGATCAAATCCATCAGCTGCCGTTTTCGGCTCTCAAGTCAGGGATTGAGCCCTAGATACATCATCTACAACTTGCTGATCCGTGAGGCGGACGTTGTCTCAGGCTAGCTTTTTTCTAGGGCCTGGTATATGCTTTTAGGGATTAGGGTTTGGGCTATTGAGGGTTTGCGCGTATATCCCATATTCAGGGGTCTGCAGGGTTCGAAGCCTAGACGGTATTTGGGATATCTTCGAGG_-_ATGGCAGGAGAACGGCAGTATGGTGTTACAGAGCCCATATCAATGGCAGGACCCACTGAGGCTGATCTTCACAGGACTCGGCAGCTGGAAGAGTTTTTGATGAGCGCGGGCCTTTATGAGAGTCCAGAGGACGGTGCCTTAAGGAAGGAGGTTTTGGCCCAAATTGATAAGATTGCAAAAGCATGGGTCAAGAGGATAACTGATGAAAGAGGGTATGGTGAACAGTTGGTGGAAGAAGCAAATGCGAAAATTTATACATTTGGGTCTTATCGTCTATCGGTACATGGTCCAGGATCAGATCTAGACACGCTATGTGTAGGGCCTTGCTATGTGATTAGGGAGGAGGATTTTTTTGGCGTTTTGCATGATATGTTGGCCGAAATGCCGGAGGTCTCTGAACTCCATCCAGTCCCTGATGCACATGTGCCTGTAATGAAGTTTAAGTTCAGAGGGATATCTATTGATTTGATCTATGCTAGCATATCACTTTGGGTTGTTCCTGAAGATTTTGATATCTCTCAGGAGTCAGTACTTTGTGATGTTGATGAACAAAGTGCAAGGAGCCTCAATGGATGCAGAGTTGCAGATCAGATCTTGCGCCTTGTACCCAATGTTGACCATTTTCGTACAACACTCAGATGCATGAAGCTCTGGGCTAAAAGGCGCGGTCTCTACTCAAATGTCACGGGTTTTTTGGGTGGTGTGAATTGGGCTTTATTAGTTGCTCGGATTTGTCAACTGTATCCAAATGCAATTCCCAGTATGTTGGTTTCGCGATTCTTTAGAGTCTATACACAATGGCGATGGCCAAATCCTGTGATGCTTTGTTCGATAGAGGAGGGTACCCTGGGATTTCCTGTATGGGATCCACGAAAGAACCCTCGTGATCGGACACATCATATGCCCATTATAACTCCTGCTTATCCGTGCATGAACTCCAGTTATAATGTATCTACGAGTACACTTCGTGTCATGACAGAGCAATTTCAGACTGGAAACAAGATTTGTGAGGATATTGAGATGAACAAGGCAGGCTGGGATGCTCTTTTTGAGTCTTATCCTTTCTTTGAGTCATACAGAAATTATTTGCAAATAGACATCGTAGCTGCAGATCAAGATGATTTGAGGACGTGGAAAGGATGGGTTGAGTCACGATTAAGGCAACTTACTTTGAAGATTGAACGAGACACATTTGGGATGCTGCAGTGTCATCCTTACCCTTGTGAATATAGCAACACATCTAGTCAAGGATATCATTGTGCATATTTTATGGGTTTACAAAGGAAACAAGGAGTGCCAATACAGGAAGGTCAACAGTTTGACATACGTGGCACTGTAGACGAATTCAGGCACTCAGTGATCATGTATTTTCTTTGGAGACCAGGAATGGACATCTTTGTATCACATGTACGTCGAAAACAAATTCCACCATATGTCTTTCCTGGAGGGGTATTACCTAGTCGACCTGCAAGAGGTGCGAATCAAACAGTAAAGGCTTCTCCAGGGAGTAGTAGTGGAAATTCTGGCGATGAATCTCCAGAACAGTGCAGCAACAAGTCATCTGTGAAACTGAACAAGAGAAAACATGAAACTGCAGGGAACATTGACAAAGGAGACAAAAAACCTGCTATTAGGTCAAATCGTGTGGTAGCTTGTTTAGGAGCAATGGAAGGTAGTCCATGTCGAGGCAATATAGCTGAAGAAGCAGTTTCTCAGAGGGTAACTGATGGTGATGTACAAAGCCGTCTGAAACAAAAAGTTTCTAAGGTCCTGGGTAGTGCTAGAACCATAGACACAGTTTCTGGCAAAACTTCAACAGAAGGATCATTGGGAAATGTCACTGCAATGAGAGCTGAAAATTTCCAAAATGGGCGGAAGGTGGAGGTCTGGCATTAATAAATGGTGTTTTTGTTAATTTTTAAATCTAATTTAGATATTATGCTTTTTCTTCGAATTCTTTGCATATAAAGAAGAAACCCTGTAGCATGACATTTAGATTTGAGGATATCATAATATATTAATTTATTTTGGGGTTTCCATTGCCAAAAGAGTCAACAAGGTAATATTCCTTGCTGTTACTTCTTCTTGACTATGGCTAAATTTAGATGCAACTGTATGATTCTCTAGGGTTTCAATCTTAT

Fln Alignment:

sp_v1.1_unigene29169___RQYGVTEPISMAGPTEADLHRTRQLEEFLMSAGLYESPEDGALRKEVLAQIDKIAKAWVKRITDERGYGEQLVEEANAKIYTFGSYRLSVHGPGSDLDTLCVGPCYVIREEDFFGVLHDMLAEMPEVSELHPVPDAHVPVMKFKFRGISIDLIYASISLWVVPEDFDISQESVLCDVDEQSARSLNGCRVADQILRLVPNVDHFRTTLRCMKLWAKRRGLYSNVTGFLGGVNWALLVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEEGTLGFPVWDPRKNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMTEQFQTGNKICEDIEMNKAGWDALFESYPFFESYRNYLQIDIVAADQDDLRTWKGWVESRLRQLTLKIERDTFGMLQCHPYPCEYSNTSSQGYHCAYFMGLQRKQGVPIQEGQQFDIRGTVDEFRHSVIMYFLWRPGMDIFVSHVRRKQIPPYVFPGGVLPSRPARGANQTVK-------ASPGSSSGNSGDESPEQCSNKSSVKLNKRKHETAGNIDKGDKKPAIRSNRVVACLGAMEGSPCRGNIAEEAVSQRVTD
C0PQ25_______________RQYGITKPISLSGPSGSDLQRSRELEEFLVSAGLYESEEESALREEVLAQIDQIVKQWVKQLTREKGYTEQMVEESNAKVFTFGSYRLGVHGPGADIDTLCVGPEYADQEEDFFILLHDMLAEMPEVMELNRVPDAHVPVMKFKFRGISIDLLYASVALRIVPDDLDISQESVLYNVDEQTVRSLNGCRVNEQILRLVPNVEHFRTTLRCMKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVFTQWRWPNPVMLRSIKEEELGFPVWDPRKNPRDRTHHMPIITPAYPGMNSSYNVSTSTLRVMTEQFQQGNKMCEDIEMNKANWSALFDPYPFFEAYKNYLQVDIVAADQDDLRLWKGWVESRLRQLTLKIERDTFGMLQCHPYPTEYVDNSKQCPHCAFFMGLQRKQGVLIQEGQQFDIRGTVDEFRQSVGMYMFWKPGMDIYVSHVRRKQIPSYVFPEGVRRVRSGRAANQIGKTSPQGRESSPKCCNGNFGDDIVEECNANSAEKANKRKHDMTTDVGKAEKRAAVSPNDVKSASLSVSDVSNRSGLASQTSSAEEPD

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
121		80		20	0.995493
123		80	20		0.995493
124		80		20	0.995493
126	40	60			1.0
129		80		20	0.995493
130			80	20	0.995493
131			20	80	0.995493
132		80	20		0.995493
137		20	80		0.995493
142	20	80			0.995493
146		16		83	0.994512
149	83	16			0.994512
150		83	16		0.994512
152		83	16		0.994512
155		16		83	0.994512
159		83	16		0.994512
161		83		16	0.994512
163		83		16	0.994512
168		16		83	0.994513
171	16	83			0.994513
269		12		87	0.992554
287		25	75		1.0
347	25		75		1.0
354		57	14		1.0
358		57		42	1.0
661	33	66			0.997452
769		16		83	0.994512
779		87	12		0.992554
874	33		66		1.0
1047			14	85	0.993535
1211		16	83		0.994512
1212	88	11			0.923564
1213	77	11	11		0.968132
1217	11			88	0.923564
1219	11		88		0.923564
1220		11	88		0.923564
1224			11	88	0.923564
1225	88		11		0.923564
1226		11		88	0.923564
1231		11		88	0.923564
1232	11		88		0.923564
1237	11		88		0.923564
1487	71			28	1.0
1706		14		85	0.993533
2397	75		25		0.996474
2410		25	75		0.996473
2411	25			75	0.996473
2412		25	75		0.996473
2413			75	25	0.996473
2414	75	25			0.996473
2418		75	25		0.996473
2420		25	75		0.996473
2421	25		75		0.996473
2423	75			25	0.996473
2426			25	75	0.996473
2429		25		75	0.996473
2430	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain