SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29162

Length: 1141 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29162

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin-protein ligase, putative	-	-	2.0e-32	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	0.0	59%

Source	InterPros	Term	Type	Identity
Blast2go	Seven-in-absentia protein, sina	IPR004162	-	59%
Blast2go	TRAF-like	IPR008974	-	59%
Blast2go	Zinc finger, SIAH-type	IPR013010	-	59%
Blast2go	TRAF-type	IPR013322	-	59%
Blast2go	Seven In Absentia Homolog-type	IPR013323	-	59%
Blast2go	Seven-in-absentia protein, TRAF-like domain	IPR018121	-	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC11

Fln msg: your sequence is shorter than subject: 213 - 293

Fln protein: SNGHIACSSCCVRMDSRCPSCLKPTGKIRCLAIEKLIESMKVGCKYAHNGCRELVRYSQMTAHESKCMYAPYLCPVSGCSFSGQSTQFSDHFKSLHGARVIQFRYEAWFTVSLATEEQFCILKGEDVIFLLQNKMRPLGNIVYATCIGPAFLEEHYSYQIEIKKGRRRLTMESVPRSIVGIHENRQDFLLTPVETYEEDGHLKFELSFRHVI*

Protein Length: 214

Fln nts: GCTCAAATGGGCATATAGCCTGTTCCTCCTGCTGTGTTAGGATGGACAGTAGATGCCCTTCATGTCTCAAGCCTACTGGAAAGATCCGTTGTCTGGCCATTGAAAAATTGATTGAGTCCATGAAAGTAGGTTGCAAATATGCACATAATGGATGTAGAGAGTTGGTTAGGTATTCCCAAATGACTGCTCATGAGTCCAAATGTATGTATGCACCATACTTGTGTCCTGTTTCAGGATGCAGCTTTTCTGGTCAATCAACACAGTTTTCAGACCATTTCAAATCTCTGCACGGAGCTCGTGTGATTCAATTTAGATATGAGGCCTGGTTCACAGTATCGTTAGCCACAGAGGAGCAGTTCTGTATCTTAAAAGGTGAAGATGTGATTTTTCTTCTTCAGAATAAAATGAGACCTCTTGGAAATATAGTTTATGCAACTTGTATTGGACCAGCTTTTTTGGAGGAACACTATTCATACCAAATCGAGATAAAAAAGGGACGGCGGCGTTTGACAATGGAAAGCGTTCCTCGAAGTATTGTCGGGATTCATGAGAATCGTCAGGATTTCCTTCTTACTCCGGTGGAAACTTACGAGGAAGATGGACATCTCAAATTCGAGTTATCCTTTCGTCATGTAATATAA___TTCAAATATAGGCTATTTGTTTCTGCATGTGTATAAAGGGAAGGAATATTGTACTTGCATGGATAAACAGCGTTTAGTTTTTCTATATTTCCCATTTCGAGGCCCTAATGTTTGTTCCATTCAAATACGGCCTCTATTAGATTTGCTGTTGAGTTATAGAAAGTGGCTTCAGAGGCACTTGCATTAGTATTATTAATATGCTCCGTTGATTGCGTTTGGAAGGAATAGATGTTTGCGCGATCAATTTGTCTGCATAAACGTGTAGGGGAAATGGACCATCTCAAGCATAAGAAGTCGGTAAGAAGGAATGCCATTGCAAATAATGGGTTCAACTTTGTAACACATAAATTGCCACTTGTCTGTAATTCTACAGAAGAGACCATTTGTCACTTCTGTGTACAGAGGGATCATTAAATCCCATTATAGGAAAAAAATTGTAATATATTTTTCTCGAATAGTGGCTGCATATTTATGGTTCTCGTGTATGTCTAACCTCTGAA

Fln Alignment:

sp_v1.1_unigene29162___SNGHIACSSCCVRMDSRCPSCLKPTGKIRCLAIEKLIESMKVGCKYAHNGCRELVRYSQMTAHESKCMYAPYLCPVSGCSFSGQSTQFSDHFKSLHGARVIQFRYEAWFTVSLATEEQFCILKGEDVIFLLQNKMRPLGNIVYATCIGPAFLEEHYSYQIEIKKGRRRLTMESVPRSIVGIHENRQDFLLTPVETYEEDGHLKFELSFRHVI
D5AC11_______________SNGHIACSSCCVMMDNRCPSCLKPTGKIRCLAIEKLIESMKVGCRYAHNGCRELVRYSQMTAHESKCIYAPYLCSVSGCSFSGPSTQFSHHFTSVHGACVIHFRYEAWFTVLLATDEQFCILEGEDMIFLLQNKMKPLGNIVYATCIGPASSEDHYSYQIEIKKGRRRLTMESVPRSIVGIHEIRQDFLLIPVETYEEDGHLTLELSFRHVI

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
685	33		66		0.997452
686		33	66		0.997452
687			66	33	0.997452
688	66	33			0.997452
1048		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain