SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29152

Length: 2112 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene29152
CGTCGTGACCTTGGCTGTCACTCAGAAGGTTGAAGATGAAGTAACTGATGAAACTGCAAAGGCAAAAGAAAATGCGGAGGAACGTCGTGACCTTGGCTGTCACTCAGCGATTCTGGAGAAGTCAGATCTCTTCAATTCTGAAGAACCTGAAAATGACAAGGTTAAATTAGGCGAGTCTGGATGGAAAGAGAGATACTATTCTGAAAAATTTGAGGCACATACACAACAAGCTCGAGAGCAAACCAAAAAGGATGTTGTCTTGAAATATACAGAAGGACTTTGTTGGGTGATGCGCTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTGTGGGTCTCAGTCAGTTAAAGATTACATTTATTCTTCGGACTCCGTTCAAGCCATTCAATCAGTTAATGGGAGTTCTTCCATCTGCAAGTGCAAATGCACTTCCTGAGCATTACAGGCCATTAATGACTGATCCAAATTCACCTATCATTGACTTTTATCCCACTGATTTTGAAATTGATATGAATGGCAAGCGTTATGCCTGGCAGGGTGTTGCTAAATTACCATTCATTGATGAATCTCGTCTTCTTGCGGAAATTAGCAAGGTTGAAGGCACATTAACGGAACAAGAAAAATTGAGAAACAGTGAAAGGTTTGACTTGCTTTTTGTGATGGCAAGTCACCGCTTAGCTCCAGATATACTTTCTCTCTATAAGCGGTATGCACATCTTACAGTAAATGAGAGAGCTAAAGTCAAAGAAAAGATCAATCCTGTTTCCAGTGGTGGATTTAATGGTTACTTCGGTCTCTGTGATGGGGATGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGCAGATGGAAAACATAGTAAACAATCAAGTTTTGTCTGTAATTTACAAGTGCCCGGCTACGCATAAACACATTCCAAGGCCCCCGGATGGGGTCATCATTCCAAAGAAGTCTGTATGTGCACAGGATGTAAGGACACAAGCCTTATGGCATGAAGATACTGGTCGAAGGCACCAGAATCAAGATAGGCCACCTGTTCGCGGTGCTATCTCAGGTCCTCAGCTTGGATCAGCAGCTCATCGTCTTGTCGTCAATAGTCTGCAGTTAAAAAGCAGTAGTTTGGGACGAGCTAAACATATAGTGCAGCAACCAGTCCCGGGGATGTCTTCTTTCGTAAATAGTAAAAACCATAATCTGAGCCCAAAACCAAGGCCAGCTGGTCCTCAAGGTTATGAAAATGGTTTTCATTTCTCTGGGGGGCAGGTTTCTAATGGTGGAATGCATAAGTCACAACAAAATGCAAAGTCTGCTGCTTTAGTGGACGATCATGTTAGTACCCAGTCAACTCCAAATCGGAATGCCAAAAATAAAAGGGGACGTGGTTCTGCTGCTTTAGTGGACGATCATGTTAGTACCCAGTCAACTCCAAATCGGAAAGCCAAAAATAAAAGGGGACGTGGTAGGAGAGATCACTCACAGCAGCAGCGGAATGGTGAGAGTTATGATAGTGATCGCCAACAGCAGCGCAGTGATGTGATACATGCTGATAGCTACCAGCGACAGCTCGACACGCATTATCAATCACATCAAGCTAATACTGAACAATATAACCAGCTACCATTTGTGCATGTAGATACTCAACGGCATCTGCCCAGAATGCGACCACCATTTGAGGGAATCACAAGGGGTAGTAGTCTTGCGCAGATGTATTCGAGGGCTCCGTCTGCAACAATCAATGGTTACACGATAAATCGTCCATACCCAACAGTCAATGGCTACCCTTTAAATAATGGGGTATATGACAACATTCAAGGCAGGGCGAGGTCTGCCATGCTGCCAGGAAACATGTACTATAGTCGTTATTAATTTTATGTTTTTTCATTGGGGATTATATCCTATCCCCGTCCTCTTTAAATCCAGTTTTCCAGCTTTTGGCGAAACATCTAATTATTGGTATTAGTTTTGATGTACAATAAAAGCATTCTTTGATTTTTATTGGTCTTTTATAGCCTTATTAGGAGGTTTAGGAGGTTCATTGTGGCTTAACTATTCGAAATTGGAAATCTCGACGTTTA

Ace file of the UniGene sp_v1.1_unigene29152 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os01g0872700 protein n=3 Tax=Oryza sativa RepID=Q5N739_ORYSJ	-	-	53%
FL-Next	sp=5'-3' exoribonuclease 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	54%
Blast2go	protein	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	miRNA catabolic process	GO:0010587	Biological Process	66%
Blast2go	5'-3' exoribonuclease activity	GO:0004534	Molecular Function	66%
Blast2go	nucleus	GO:0005634	Cellular Component	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9FQ03

Fln msg: your sequence is shorter than subject: 634 - 1020

Fln protein: VVTLAVTQKVEDEVTDETAKAKENAEERRDLGCHSAILEKSDLFNSEEPENDKVKLGESGWKERYYSEKFEAHTQQAREQTKKDVVLKYTEGLCWVMRYYYQGVCSWQWYYPYHYAPFASDLVGLSQLKITFILRTPFKPFNQLMGVLPSASANALPEHYRPLMTDPNSPIIDFYPTDFEIDMNGKRYAWQGVAKLPFIDESRLLAEISKVEGTLTEQEKLRNSERFDLLFVMASHRLAPDILSLYKRYAHLTVNERAKVKEKINPVSSGGFNGYFGLCDGDACPPVFTSPVKQMENIVNNQVLSVIYKCPATHKHIPRPPDGVIIPKKSVCAQDVRTQALWHEDTGRRHQNQDRPPVRGAISGPQLGSAAHRLVVNSLQLKSSSLGRAKHIVQQPVPGMSSFVNSKNHNLSPKPRPAGPQGYENGFHFSGGQVSNGGMHKSQQNAKSAALVDDHVSTQSTPNRNAKNKRGRGSAALVDDHVSTQSTPNRKAKNKRGRGRRDHSQQQRNGESYDSDRQQQRSDVIHADSYQRQLDTHYQSHQANTEQYNQLPFVHVDTQRHLPRMRPPFEGITRGSSLAQMYSRAPSATINGYTINRPYPTVNGYPLNNGVYDNIQGRARSAMLPGNMYYSRY*

Protein Length: 635

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAAGGTTGAAGATGAAGTAACTGATGAAACTGCAAAGGCAAAAGAAAATGCGGAGGAACGTCGTGACCTTGGCTGTCACTCAGCGATTCTGGAGAAGTCAGATCTCTTCAATTCTGAAGAACCTGAAAATGACAAGGTTAAATTAGGCGAGTCTGGATGGAAAGAGAGATACTATTCTGAAAAATTTGAGGCACATACACAACAAGCTCGAGAGCAAACCAAAAAGGATGTTGTCTTGAAATATACAGAAGGACTTTGTTGGGTGATGCGCTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTGTGGGTCTCAGTCAGTTAAAGATTACATTTATTCTTCGGACTCCGTTCAAGCCATTCAATCAGTTAATGGGAGTTCTTCCATCTGCAAGTGCAAATGCACTTCCTGAGCATTACAGGCCATTAATGACTGATCCAAATTCACCTATCATTGACTTTTATCCCACTGATTTTGAAATTGATATGAATGGCAAGCGTTATGCCTGGCAGGGTGTTGCTAAATTACCATTCATTGATGAATCTCGTCTTCTTGCGGAAATTAGCAAGGTTGAAGGCACATTAACGGAACAAGAAAAATTGAGAAACAGTGAAAGGTTTGACTTGCTTTTTGTGATGGCAAGTCACCGCTTAGCTCCAGATATACTTTCTCTCTATAAGCGGTATGCACATCTTACAGTAAATGAGAGAGCTAAAGTCAAAGAAAAGATCAATCCTGTTTCCAGTGGTGGATTTAATGGTTACTTCGGTCTCTGTGATGGGGATGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGCAGATGGAAAACATAGTAAACAATCAAGTTTTGTCTGTAATTTACAAGTGCCCGGCTACGCATAAACACATTCCAAGGCCCCCGGATGGGGTCATCATTCCAAAGAAGTCTGTATGTGCACAGGATGTAAGGACACAAGCCTTATGGCATGAAGATACTGGTCGAAGGCACCAGAATCAAGATAGGCCACCTGTTCGCGGTGCTATCTCAGGTCCTCAGCTTGGATCAGCAGCTCATCGTCTTGTCGTCAATAGTCTGCAGTTAAAAAGCAGTAGTTTGGGACGAGCTAAACATATAGTGCAGCAACCAGTCCCGGGGATGTCTTCTTTCGTAAATAGTAAAAACCATAATCTGAGCCCAAAACCAAGGCCAGCTGGTCCTCAAGGTTATGAAAATGGTTTTCATTTCTCTGGGGGGCAGGTTTCTAATGGTGGAATGCATAAGTCACAACAAAATGCAAAGTCTGCTGCTTTAGTGGACGATCATGTTAGTACCCAGTCAACTCCAAATCGGAATGCCAAAAATAAAAGGGGACGTGGTTCTGCTGCTTTAGTGGACGATCATGTTAGTACCCAGTCAACTCCAAATCGGAAAGCCAAAAATAAAAGGGGACGTGGTAGGAGAGATCACTCACAGCAGCAGCGGAATGGTGAGAGTTATGATAGTGATCGCCAACAGCAGCGCAGTGATGTGATACATGCTGATAGCTACCAGCGACAGCTCGACACGCATTATCAATCACATCAAGCTAATACTGAACAATATAACCAGCTACCATTTGTGCATGTAGATACTCAACGGCATCTGCCCAGAATGCGACCACCATTTGAGGGAATCACAAGGGGTAGTAGTCTTGCGCAGATGTATTCGAGGGCTCCGTCTGCAACAATCAATGGTTACACGATAAATCGTCCATACCCAACAGTCAATGGCTACCCTTTAAATAATGGGGTATATGACAACATTCAAGGCAGGGCGAGGTCTGCCATGCTGCCAGGAAACATGTACTATAGTCGTTATTAA___TTTTATGTTTTTTCATTGGGGATTATATCCTATCCCCGTCCTCTTTAAATCCAGTTTTCCAGCTTTTGGCGAAACATCTAATTATTGGTATTAGTTTTGATGTACAATAAAAGCATTCTTTGATTTTTATTGGTCTTTTATAGCCTTATTAGGAGGTTTAGGAGGTTCATTGTGGCTTAACTATTCGAAATTGGAAATCTCGACGTTTA

Fln Alignment:

sp_v1.1_unigene29152___KENAEERRDLGCHSAILEKSDLFNSEEPENDKVKLGESGWKERYYSEKFEAHTQQAREQTKKDVVLKYTEGLCWVMRYYYQGVCSWQWYYPYHYAPFASDLVGLSQLKITFILRTPFKPFNQLMGVLPSASANALPEHYRPLMTDPNSPIIDFYPTDFEIDMNGKRYAWQGVAKLPFIDESRLLAEISKVEGTLTEQEKLRNSERFDLLFVMASHRLAPDILSLYKRYAHLTVNERAKVKEKINPVSSGGFNGYFGLCDGDACPPVFTSPVKQMENIVNNQVLSVIYKCPATHKHIPRPPDGVIIPKKSVCAQDVR-TQALWHEDTGRR--------------HQNQDRPPVRGAISGPQLGSAAHRLVVNSLQLKSSSLGRAKHIVQQPVPGMS----SFVNSKNHNLSPKPRPAGPQGY
Q9FQ03_______________RENKEELKTK-LKELIREKSDAFNSDTTEEDKVKLGQPGWRERYYEEKFSVVTPEEMERVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGTPFKPFNQLLGVFPAASSHALPERYRTLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRNSRMCDMLFIATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLSDGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQMGTD---RYQTPTDVPAPGYGYNPPQYVPPIPYQHGGYMAPPGAQGY

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
551		10	90		0.90298
575		10		90	0.90298
740		60	20		0.99255
743	40		60		1.0
744		40	60		1.0
745	20	20		60	0.99255
746	83		16		0.994512
748		16		83	0.994512
749	83		16		0.994512
750	83	16			0.994512
751		83	16		0.994512
752	66	16	16		0.988813
753		16		83	0.994512
754	16	16	66		0.988813
757	25	75			0.996473
759	20			80	0.995493
761		80	20		0.995493
796		25		75	0.996473
807	75	25			0.996473
817	66		33		0.997452
993		88		11	0.923564
1102	10	90			0.90298
1293	25		75		0.996473
1347	75	25			0.996473
1348			75	25	0.996473
1354	20			80	0.995493
1356	60	20		20	0.99255
1358		16		83	0.994513
1360	83	16			0.994513
1362		16		83	0.994513
1363	16		83		0.994523
1380	20		80		0.995505
1412		75		25	0.996475
1552	83		16		0.994512
1597		83		16	0.994512
1690		87		12	0.992554
1706			25	75	1.0
1710	75	25			1.0
1711	25			75	1.0
1713		25	75		1.0
1715	25			75	1.0
1716	25			75	1.0
1718	14		28		1.0
1719			14	28	1.0
1720	75	25			1.0
1724	25		75		1.0
1725	75	25			1.0
1904	80	20			0.995498
1905		20	80		0.995498
1907	20			80	0.995499
2033	66			33	0.997456
2034			66	33	0.997456
2036			66	33	0.997456
2037	66			33	0.997456
2046	33		66		0.997471
2049		66		33	0.997476
2050	66			33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain