SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29149

Length: 1089 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene29149 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Exo-beta-glucanase n=1 Tax=Lilium longiflorum RepID=Q6UY81_LILLO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	endo-alpha- -glucanase	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	77%
Blast2go	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	77%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUD1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 363 - 631

Fln protein: RRDLGCHSNAGIDMVDKSVLYSLL**VVKFSLLCSVFPTLFCFNSLGSNHLRYLVSLKKYAVLNIVGDGPF*VPNLH*LRLTALVNSNVISMSRIDDAVRRILRVKFVAGLFEHPKTDRSLLGMVGNLAHRELAREAVRKSLVLLKNGKMPGKPLLPLDKKAPKILVAGSHADNLGYQCGGWTISWEGGSGATTVGTTILDAIKQAVSPSTEVVYEQNPDANFTKGKGFSYAIAVIGEPPYVESTGDNTNMTIPLGGIDVINNVCNNAFPCLVILISGRPLVVEPYLNRMDAFVAAWLPGSEGRGITDVIFGDYDFQGQLPRTWFKRVDQLPMNVGDKDYDPLFPFGFSMSMNLQSGHHHHQ*

Protein Length: 364

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGCTGGAATTGACATGGTAGATAAGTCTGTTTTATATTCTCTTCTTTAATAGGTTGTGAAATTCTCTCTTTTGTGCTCTGTTTTTCCAACTTTATTTTGTTTCAACTCATTAGGCTCTAATCATTTACGTTATTTAGTATCGCTGAAGAAATATGCTGTTTTAAACATTGTAGGTGATGGTCCCTTTTAAGTTCCAAACTTACATTGACTGAGACTTACAGCTCTGGTGAACTCCAATGTGATCTCCATGAGCCGAATAGACGATGCAGTTAGGAGGATTCTAAGAGTCAAATTCGTCGCTGGTTTGTTTGAGCACCCAAAAACAGACCGCTCTTTGTTGGGCATGGTTGGCAATCTTGCACATAGAGAGCTGGCCAGAGAAGCTGTACGCAAGTCTCTTGTTCTCTTGAAGAATGGGAAAATGCCTGGAAAGCCATTATTGCCTCTTGACAAGAAAGCTCCAAAGATACTTGTAGCAGGCAGTCATGCAGACAATCTGGGTTACCAGTGTGGAGGATGGACTATAAGCTGGGAAGGTGGCAGTGGTGCTACAACTGTAGGAACCACCATTCTGGATGCCATAAAACAAGCCGTCAGTCCATCAACCGAAGTAGTATACGAGCAGAACCCAGATGCAAATTTTACCAAAGGGAAGGGATTCTCTTACGCCATTGCAGTAATCGGGGAACCTCCCTACGTGGAATCAACGGGAGATAACACCAATATGACCATCCCTCTTGGGGGAATCGATGTGATAAACAATGTATGTAACAACGCTTTTCCGTGCCTGGTGATCTTGATATCGGGGAGGCCGCTGGTCGTGGAACCCTATTTGAACAGGATGGACGCGTTCGTAGCTGCATGGTTACCTGGCAGTGAAGGGCGCGGTATTACGGATGTTATATTCGGGGATTATGATTTTCAAGGCCAACTGCCCAGAACGTGGTTTAAACGCGTGGATCAACTGCCTATGAATGTGGGTGATAAAGATTACGATCCATTGTTCCCTTTTGGGTTCAGTATGAGCATGAATTTGCAGAGTGGCCATCATCATCACCAATAG___

Fln Alignment:

sp_v1.1_unigene29149___LTALVNSNVISMSRIDDAVRRILRVKFVAGLFEHPKTDRSLLGMVGNLAHRELAREAVRKSLVXXXXXXXXXXXXXXXXXXXXXXLVAGSHADNLGYQCGGWTISWEGGSGATTVGTTILDAIKQAVSPSTEVVYEQNPDANFTKGKGFSYAIAVIGEPPYVESTGDNTNMTIPLGGIDVINNVCNNAFPCLVILISGRPLVVEPYLNRMDAFVAAWLPGSEGRGITDVIFGDYDFQGQLPRTWFKRVDQLPMNVGDKDYDPLFPFGFSMS
A9NUD1_______________LTSQVKGGLISMTRINDAVRRILTVKFTMGLFEYPMADPSLANHFGSKEHRELAREAVRKSLVLLKNGKSAGKPLLPLDKNAPKILVAGTHPNNLGYQCGGWTIEWQGLSGNSTIGTTILQAIKFAVSPSTEVIYQQNPDANYVKGQGFSYAIVVVGEAPYAEMNGDNLNLTIPLGGGDTIKNVC-SSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGQGVTDVIFGDYGFQGKLPRTWFKSVDQLPMNVGDKHYDPSFPLGFGLT

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
326	10	90			0.903003
327		90	10		0.902998
328		90		10	0.902998
329	90		10		0.90298
331		10	90		0.90298
334		10	90		0.90298
335		10	90		0.90298
337	10			90	0.90298
343		10		90	0.90298
344	88		11		0.923564
345	11			88	0.923564
346		11		88	0.923564
497	87	12			0.992554
498		12	87		0.992554
499	87	12			0.992554
521		12	87		0.992554
568	87	12			0.992554
597	11		88		0.923564
611		11		88	0.923564
617	11			88	0.923564
627	87	12			0.992554
629		14	85		0.993533
631			85	14	0.993533
638	83	16			0.994512
646		83		16	0.994512
649	16		83		0.994512
675	83		16		0.994512
702		83		16	0.994512
709		85		14	0.993533
716	14		85		0.993533
739		83		16	0.994512
742	83		16		0.994512
755		20		80	0.995493
756	20			80	0.995493
758			16	83	0.994514
761		16	83		0.994513
778		85		14	0.993533
860	60		40		1.0
864		60	40		1.0
865	40			60	1.0
869		40		60	1.0
873			40	60	1.0
876	60	40			1.0
878		40	60		1.0
879			40	60	1.0
880	40			60	1.0
881		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain