SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29129

Length: 1031 nt

Origin of reads: Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29129

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NBS (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I9_PINTA	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	protein	-	-	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW11

Fln msg: Separated hits, possible frame ERROR between 192 and 276, Distance to subject end: 36 aas, your sequence is shorter than subject: 344 - 495

Fln protein: QFLDTEEGIFEDILNRVEFPELIWLRWKTCNHASLPSWIPMRNLRVLQVFGSVLKTLWEEESQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAPSELRELEIYAPLRNIPKSIRRLEHLERIVVGRFSNIGRVNLIELPEEFCELKSLKALVLKECSRLKSLPHSFGKLTTLEHIDFSFCRNLERLPDSFGRLKNLEHIDLSNCYDLKSLPDSFGCLGNLRSIDLQGCHKLKRLPDSFGKLKKLKRISISDCHGLRDLPESFGDLSKLEYIDFSRCHNLKSLPDSFGNLTNLQRLNLSNCHDLETLPDCFDNLKNLQDIDLSKCHNLERLPNSLQNPDKSNIL

Protein Length: 345

Fln nts: CAATTTCTGGATACCGAAGAAGGTATCTTTGAAGACATTTTGAATAGGGTAGAGTTCCCAGAACTGATATGGCTCAGATGGAAAACGTGTAACCACGCCTCTCTGCCTTCATGGATCCCCATGAGGAATTTGAGGGTTCTACAAGTATTCGGGAGCGTGCTAAAAACATTGTGGGAGGAAGAATCGCAGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGGCGCCTTCGGAATTGCGAGAGTTAGAAATTTATGCTCCGCTCAGGAACATTCCAAAGTCCATAAGGCGGCTGGAGCACCTCGAACGGATTGTCGTCGGCAGGTTTTCAAATATAGGACGGGTTAATCTCATAGAATTGCCAGAAGAATTTTGTGAGTTGAAATCTTTAAAGGCCTTGGTGTTAAAAGAGTGCTCAAGGTTGAAGTCACTGCCACATTCTTTTGGTAAGTTAACAACCCTCGAACACATTGATTTCTCCTTCTGCCGCAATTTGGAGAGGCTACCAGATTCTTTTGGTAGATTAAAGAACCTGGAACACATTGATCTCTCAAATTGCTACGATCTGAAGAGCCTCCCAGATTCCTTTGGTTGTTTAGGGAATCTCCGAAGCATCGATTTGCAGGGGTGCCACAAGTTAAAGAGGCTGCCTGATTCCTTTGGTAAACTAAAGAAGCTCAAACGCATCAGTATATCAGATTGCCACGGTTTGAGGGATCTGCCAGAATCCTTCGGTGATTTAAGCAAGCTCGAATACATCGATTTTTCAAGGTGCCATAATTTGAAGAGCCTACCTGACTCATTTGGTAATTTGACCAATCTCCAACGCCTCAATCTCTCAAATTGCCACGATTTAGAGACGCTGCCAGATTGTTTTGATAATTTAAAGAACCTGCAAGACATCGATCTCTCAAAGTGCCACAATTTGGAGAGGCTTCCAAATTCTTTGCAGAATCCAGATAAATCTAATATTCTT

Fln Alignment:

sp_v1.1_unigene29129___QFLDTEEGIFEDILNRVEFPELIWLRWKTCNHASLPSWIPMRNLRVLQVFGSVLKTLWEEESQVxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAPSELRELEIYAPLRNIPKSIRRLEHLERIVVGRFSNIGRVNLIELPEEFCELKSLKALVLKECSRLKSLPHSFGKLTTLEHIDFSFCRNLERLPDSFGRLKNLEHIDLSNCYDLKSLPDSFGCLGNLRSIDLQGCHKLKRLPDSFGKL----------KKLKRISISDCHGLRDLPESFGDLSKLEYIDFSRCHNLKSLPDSFGNLTNLQRLNLSNCHDLETLPDCFDNLKNLQDIDLSKCHNLERLPNSLQNPDKSNIL
A9NW11_______________ELVDTDENAILACILRKPVPSLIWLRWNKCPNLSLPWWIPMGRLRVLQVYGSELKTLWEDESQVxxxxxxxxxxxxxxxxxxxxxxxxxxxxQVPLQLRELEINAPLSNIPKSIGWLEHLERIVVAGFLS-GHVHLTKLPKEFCRLRSLRDLVLTECSKMKSLPDSFCHLWNLQHIDLSFCCNLERLPDSIGRLQGLRHINLSYCHDLERLPDSIGRLRGLQHIDLRGCHNLESLPDSFGELWDLPYSFGEPWDLRHINLSGCHDLQRLPDSFVNLRYLQHIDLQGCHNLQSLPDGFGDLRNLDHVNLSNCHDLEWLPDSFGNLRNLQYIDLSGCHNLERLPNYFRNFNKLKYL

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
374			50	50	1.0
377		75		25	0.996473
439		50		50	1.0
443	50		50		1.0
484	28		71		1.0
498	85		14		0.993533
501	14	85			0.993533
536		28		71	1.0
542		28		71	1.0
548		85	14		0.993533
553		25		75	1.0
561		25	75		1.0
583	70			30	1.0
591	88		11		0.991528
630	87		12		0.992554
680		14		85	0.993541
698	18		81		0.999994
726	80		20		0.999996
737			90	10	0.90298
741	90		10		0.90298
794	42	57			1.0
797			42	57	1.0
798	14		85		0.993533
805		10	90		0.90298
818		90		10	0.90298
852		87		12	0.992554
855	62		37		1.0
861		75	25		1.0
873	28			71	1.0
878		71		28	1.0
892	50	50			1.0
919	16		83		0.994512
950	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain