SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29118

Length: 797 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29118

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ	-	-	4.99983e-42	46%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	45%
Blast2go	copia-type polyprotein	-	-	8.89965e-42	64%

Full-Lengther Next Prediction

SNPs (tot: 74)

Position	A %	C %	G %	T %	Probability
238			20	80	0.995493
242	20		80		0.995493
244	60			40	1.0
250		20		80	0.995493
256		20		80	0.995493
260	20		80		0.995493
266	40		60		1.0
270		80		20	0.995493
277		25	25	50	1.0
282			80	20	0.995493
288	20		80		0.995493
301	20			80	0.995493
302		80		20	0.995493
303		80		20	0.995493
304	80			20	0.995493
305	50		50		1.0
315		80		20	0.995493
324		80		20	0.995493
331		20		80	0.995493
336		80		20	0.995493
341		80		20	0.995493
342	80		20		0.995493
343			80	20	0.995493
344		60		40	1.0
348	40		60		1.0
350		80		20	0.995493
354	60		40		1.0
358			80	20	0.995493
372		80	20		0.995493
373	80		20		0.995493
391		20		80	0.995493
395	80			20	0.995493
396	40		60		1.0
406	20		80		0.995493
407	40			60	1.0
414	60		40		1.0
422		20		80	0.995493
434		40		60	1.0
437		40		60	1.0
440	25	75			1.0
442		87	12		0.992554
443			37	62	1.0
444	12		87		0.992554
451	88			11	0.991528
452	11	11	77		0.968132
453			11	88	0.991528
454			11	88	0.991528
483	37			62	1.0
485		87		12	0.992554
486	25		25	50	1.0
489	12		87		0.992554
492		87		12	0.992554
495	12	87			0.992554
508		87		12	0.992554
511		87		12	0.992554
516		75		25	1.0
519	87			12	0.992554
520		87		12	0.992554
526	12	12	75		0.975346
527		12	12	75	0.975346
528		12		87	0.992554
529		12	87		0.992554
531			87	12	0.992554
534		83		16	0.994512
540	83			16	0.994512
550		83		16	0.994512
552		16		83	0.994512
563		80		20	0.995493
564	80			20	0.995493
566	80		20		0.995493
567		50		50	1.0
570		50	50		1.0
580	75		25		0.996473
586		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain