SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29111

Length: 3172 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene29111
CTAGTTCTCTGTTTGGATTTCAACTATATCGTGGCATCCCGTACATGTTGGCCTTTTGTCTGTGAGGTCTCTTTTTTGGTGTGGAACTGTGGATCTTTTGAGTTGATATGTTCTCTGAAGTTTCAAATGTTTTGAGTTGAGATTGGTGCATTTTGAGCCAGATTTGGTCTATTTTGCCTTCCATCCGATTTTTTAAGAGAGGGGCTTTAGAACATCGCATTGGCGCCCCAACGCCGAGCCCATCGCCACATTGGTGGCCAGATGCCGCAGAGCAGCGCCGCGGCTCTGTATGATTACGGGGTTTCCCTGCACAACATGGGGAGCTCTATCGATTCCAGCGATCCAGTCACGGCTCGCTGGCTTCAGTCCGCTGGTCTGCAGCATCTGGCCCCTATGGCGTCTACGGGCATGGATCACCGTCTCCTACCGAATCTGTTAATGCAGGGTTACGGGGCACAATCATTGGACGAAAAACAGAAGCTGTTCAAGTTCTTCAAGGGCATGAATTTAGGTGCAGAGTCTGGATCTGAGCCAATCACTCCTACAGCTCAGAGTTCTGCAGGACTGGCTGCTACGGATGGCTTCCTTTCCCCTGAGTTGCGGGGGGAGTTTGGGGCAGGGCTCTTGGATCTGCATGCCATGGATGACACCGAGTTGTTTAGTGAGCACGCAGTTTCAGAACCTTTTGAAACATCACCATTTCTCCCAATGGTTGAGAAGGATTCTGGTACAACGATTGATATTGGCAAGCAACTAAAGGCACCAATGGATAATGCTTTCAAATCATCGTTGGTTGACAAAGAGCCGAGTGGAAAGGAGAGCAATTTGGCAAAGATTAAAGTTGTGGTTCGGAAAAGACCTTTGAATAAAAAGGAGTTGGCGAGGAAGGAGGAAGATATTATCACTGTTAATGATAATGTCTGGTTAAGTGTTCACGAACCAAAGTTGAAGGTGGATTTGACAGCTTATGTGGAGAAACACGATTTCGTGTTTGATGCTATTTTAGATGAACGTGTCTCAAATGATGAAGTTTATCGAGTTACTGTGGAGCCCATTGTTCCAACCATCTTTCAGCGTACAAAAGCTACATGCTTTGCATACGGTCAAACAGGTAGTGGAAAGACATTTACAATGCAGCCTTTGCCACTAAGAGCCTCAGAGGATATACTTAAGTTGATGAACAGAACTTTATATCGAGAGCAAGGGTTTCGCTTGTGGCTTAGTTTCTTTGAGATATATGGGGGCAAACTATATGATCTTCTTGGTGACAGGAGGAAATTGTGTATGAGGGAGGATGCCCGGCAACAAGTTTGCATTGTTGGTTTGCAAGAATTTGAAGTCTCAGACATACAATGTGTAAAGGAGTATATTGAGAAAGGGAATGGAGCCCGAAGCACAGGTTCAACTGGAGCTAATGAAGAGTCATCCAGGTCTCATGCTATCTTGCAGCTTGCAATTAAGAAGCATGGTGAAGGAAAAGAGTCTAAGGGCGGTAGAATAGTTGGGAAGCTATCTTTTATTGATCTTGCTGGAAGTGAACGTGGGGCAGACACAACAGACAATGATCGCCAAACAAGGATGGAGGGAGCGGAAATCAACAAGAGCCTTCTGGCTCTAAAAGAGTGTATACGGGCCTTAGATAATGACCAAATTCATATTCCATTTCGAGGAAGCAAGTTGACGGAAGTGCTTCGTGATTCCTTTGTAGGAAACTCACGGACGGTTATGATATCATGTGTTTCTCCTAATTCGGGTTCTTGTGAGCATACACTTAATACATTGAGATATGCAGATAGGGTTAAAGGGCTTTCAAAGAGCAGTAATATGAAAAAGGATCAAAGTACAAGCAGTTCAGCTCTGCCTCCAAAGGATTTGTCTTCATCCCCACCTTTGCCTTTGGAGGATGCAAGGGAGTATTCTGATTATAACCAAACTGTAGCAAATGTAGATGCTGGTAGAAGGTCTGTGGACAATCCTCAATATTACAGTCAATCTGAAGAACTTGGAAGGCTTCCTTCTAGTTTGTCATCGAGTTATCCCTTTAATAGCAGAGAGGAAAGTGGCTTTTCAGGTATGGTTGAAAACAATAGAGTTAACATGAAAGAGGGTATTGCTGGTCCTGTTACAAGTCAAAAGTCCTCTTCAGCTATGAATTCTTTTGATACATACGGGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAGGTAAGCAGAGATGAAAAACCGGACAAACAGATAAACTGGACATCTAAAGAAGATGGCAAGTCTGAGGCATTTAATGCTGTCAGAAAGCAACAGCAGCAATTTAAGGAAGATCCTGCTTCAAATAACAATGCTCCCAGACTCAAGGAAAGGGTACAAACTGATTATGATAATGATATAAATGCAATACTTCAGGAGGAGGAAGCTTTAATAGCGGCCCACAGGAAGGAGATTGAAGATACAATGGATTTAGTGCGTGAGGAAATGAAAATTTTAACAGAAGTTGAGCAACCAGGCAGCCTCATAGATGACTATGTGTCCAAACTAAGTATTGTGTTATCACGGAAAGCGGCTAGTCTGGTGAGCTTGCAGGCTCGACTCGCAAGGTTTCAGAACCGTCTCAAGGAGCAAGAGATACTTAGCCTGAAAAAGACATGTCCTTGAGATGATCCATCAGACATTTGGAAACCATTCTTTCAGCTCTGATTTTTTCTTAGGTGGTAAATTTTGCAGTTGGCATCATACCCAAGATGGAGATGTTGACTGAGAATCCATATCTCTGAAGGCCAGCTGTATATGAAATCTCTTGCTGCAACACAACAGATCGTTAGAGTTGATTTGTCATGCAATATTTCTGCGTATACTAAATTGTGAAATTTGGTGTGTTTCGTAATCTTATTGCTTCCTATTGTTATTCTACTGGGAATGCAAGATGTACCTGTTCAGAGAAAGGTGGAAGCCCCAATTCAGGTCCTTGGATTCATGACTTTACAATGTTCCCATTCAAATTTATTAATATGCCAGGAGCTTTTCTCTGGTGAAAACTATAGCATCTTATTATGTCTTGTAACCTTGTAACTGTTTTTACATGTTTCTGTAGAAACTGCACACTACTATGATAAAGGAACCAAGGATTGAAAATTTTATCGTCAATGATAGCTCGTAGGAGTGGCCATCCTTGAAC

Ace file of the UniGene sp_v1.1_unigene29111

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	kif4, putative; K10393 kinesin family member 2/24	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	0.0	74%
Blast2go	Golgi stack	GO:0005795	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Kinesin, motor domain	IPR001752	-	0.0	74%
Blast2go	Kinesin, motor region, conserved site	IPR019821	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: your sequence is longer than subject: 797 - 509

Fln protein: MPQSSAAALYDYGVSLHNMGSSIDSSDPVTARWLQSAGLQHLAPMASTGMDHRLLPNLLMQGYGAQSLDEKQKLFKFFKGMNLGAESGSEPITPTAQSSAGLAATDGFLSPELRGEFGAGLLDLHAMDDTELFSEHAVSEPFETSPFLPMVEKDSGTTIDIGKQLKAPMDNAFKSSLVDKEPSGKESNLAKIKVVVRKRPLNKKELARKEEDIITVNDNVWLSVHEPKLKVDLTAYVEKHDFVFDAILDERVSNDEVYRVTVEPIVPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRASEDILKLMNRTLYREQGFRLWLSFFEIYGGKLYDLLGDRRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLAIKKHGEGKESKGGRIVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNMKKDQSTSSSALPPKDLSSSPPLPLEDAREYSDYNQTVANVDAGRRSVDNPQYYSQSEELGRLPSSLSSSYPFNSREESGFSGMVENNRVNMKEGIAGPVTSQKSSSAMNSFDTYGDEKVQKVSPTRRKVSRDEKPDKQINWTSKEDGKSEAFNAVRKQQQQFKEDPASNNNAPRLKERVQTDYDNDINAILQEEEALIAAHRKEIEDTMDLVREEMKILTEVEQPGSLIDDYVSKLSIVLSRKAASLVSLQARLARFQNRLKEQEILSLKKTCP*

Protein Length: 798

Fln nts: CTAGTTCTCTGTTTGGATTTCAACTATATCGTGGCATCCCGTACATGTTGGCCTTTTGTCTGTGAGGTCTCTTTTTTGGTGTGGAACTGTGGATCTTTTGAGTTGATATGTTCTCTGAAGTTTCAAATGTTTTGAGTTGAGATTGGTGCATTTTGAGCCAGATTTGGTCTATTTTGCCTTCCATCCGATTTTTTAAGAGAGGGGCTTTAGAACATCGCATTGGCGCCCCAACGCCGAGCCCATCGCCACATTGGTGGCCAG_-_ATGCCGCAGAGCAGCGCCGCGGCTCTGTATGATTACGGGGTTTCCCTGCACAACATGGGGAGCTCTATCGATTCCAGCGATCCAGTCACGGCTCGCTGGCTTCAGTCCGCTGGTCTGCAGCATCTGGCCCCTATGGCGTCTACGGGCATGGATCACCGTCTCCTACCGAATCTGTTAATGCAGGGTTACGGGGCACAATCATTGGACGAAAAACAGAAGCTGTTCAAGTTCTTCAAGGGCATGAATTTAGGTGCAGAGTCTGGATCTGAGCCAATCACTCCTACAGCTCAGAGTTCTGCAGGACTGGCTGCTACGGATGGCTTCCTTTCCCCTGAGTTGCGGGGGGAGTTTGGGGCAGGGCTCTTGGATCTGCATGCCATGGATGACACCGAGTTGTTTAGTGAGCACGCAGTTTCAGAACCTTTTGAAACATCACCATTTCTCCCAATGGTTGAGAAGGATTCTGGTACAACGATTGATATTGGCAAGCAACTAAAGGCACCAATGGATAATGCTTTCAAATCATCGTTGGTTGACAAAGAGCCGAGTGGAAAGGAGAGCAATTTGGCAAAGATTAAAGTTGTGGTTCGGAAAAGACCTTTGAATAAAAAGGAGTTGGCGAGGAAGGAGGAAGATATTATCACTGTTAATGATAATGTCTGGTTAAGTGTTCACGAACCAAAGTTGAAGGTGGATTTGACAGCTTATGTGGAGAAACACGATTTCGTGTTTGATGCTATTTTAGATGAACGTGTCTCAAATGATGAAGTTTATCGAGTTACTGTGGAGCCCATTGTTCCAACCATCTTTCAGCGTACAAAAGCTACATGCTTTGCATACGGTCAAACAGGTAGTGGAAAGACATTTACAATGCAGCCTTTGCCACTAAGAGCCTCAGAGGATATACTTAAGTTGATGAACAGAACTTTATATCGAGAGCAAGGGTTTCGCTTGTGGCTTAGTTTCTTTGAGATATATGGGGGCAAACTATATGATCTTCTTGGTGACAGGAGGAAATTGTGTATGAGGGAGGATGCCCGGCAACAAGTTTGCATTGTTGGTTTGCAAGAATTTGAAGTCTCAGACATACAATGTGTAAAGGAGTATATTGAGAAAGGGAATGGAGCCCGAAGCACAGGTTCAACTGGAGCTAATGAAGAGTCATCCAGGTCTCATGCTATCTTGCAGCTTGCAATTAAGAAGCATGGTGAAGGAAAAGAGTCTAAGGGCGGTAGAATAGTTGGGAAGCTATCTTTTATTGATCTTGCTGGAAGTGAACGTGGGGCAGACACAACAGACAATGATCGCCAAACAAGGATGGAGGGAGCGGAAATCAACAAGAGCCTTCTGGCTCTAAAAGAGTGTATACGGGCCTTAGATAATGACCAAATTCATATTCCATTTCGAGGAAGCAAGTTGACGGAAGTGCTTCGTGATTCCTTTGTAGGAAACTCACGGACGGTTATGATATCATGTGTTTCTCCTAATTCGGGTTCTTGTGAGCATACACTTAATACATTGAGATATGCAGATAGGGTTAAAGGGCTTTCAAAGAGCAGTAATATGAAAAAGGATCAAAGTACAAGCAGTTCAGCTCTGCCTCCAAAGGATTTGTCTTCATCCCCACCTTTGCCTTTGGAGGATGCAAGGGAGTATTCTGATTATAACCAAACTGTAGCAAATGTAGATGCTGGTAGAAGGTCTGTGGACAATCCTCAATATTACAGTCAATCTGAAGAACTTGGAAGGCTTCCTTCTAGTTTGTCATCGAGTTATCCCTTTAATAGCAGAGAGGAAAGTGGCTTTTCAGGTATGGTTGAAAACAATAGAGTTAACATGAAAGAGGGTATTGCTGGTCCTGTTACAAGTCAAAAGTCCTCTTCAGCTATGAATTCTTTTGATACATACGGGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAGGTAAGCAGAGATGAAAAACCGGACAAACAGATAAACTGGACATCTAAAGAAGATGGCAAGTCTGAGGCATTTAATGCTGTCAGAAAGCAACAGCAGCAATTTAAGGAAGATCCTGCTTCAAATAACAATGCTCCCAGACTCAAGGAAAGGGTACAAACTGATTATGATAATGATATAAATGCAATACTTCAGGAGGAGGAAGCTTTAATAGCGGCCCACAGGAAGGAGATTGAAGATACAATGGATTTAGTGCGTGAGGAAATGAAAATTTTAACAGAAGTTGAGCAACCAGGCAGCCTCATAGATGACTATGTGTCCAAACTAAGTATTGTGTTATCACGGAAAGCGGCTAGTCTGGTGAGCTTGCAGGCTCGACTCGCAAGGTTTCAGAACCGTCTCAAGGAGCAAGAGATACTTAGCCTGAAAAAGACATGTCCTTGA___GATGATCCATCAGACATTTGGAAACCATTCTTTCAGCTCTGATTTTTTCTTAGGTGGTAAATTTTGCAGTTGGCATCATACCCAAGATGGAGATGTTGACTGAGAATCCATATCTCTGAAGGCCAGCTGTATATGAAATCTCTTGCTGCAACACAACAGATCGTTAGAGTTGATTTGTCATGCAATATTTCTGCGTATACTAAATTGTGAAATTTGGTGTGTTTCGTAATCTTATTGCTTCCTATTGTTATTCTACTGGGAATGCAAGATGTACCTGTTCAGAGAAAGGTGGAAGCCCCAATTCAGGTCCTTGGATTCATGACTTTACAATGTTCCCATTCAAATTTATTAATATGCCAGGAGCTTTTCTCTGGTGAAAACTATAGCATCTTATTATGTCTTGTAACCTTGTAACTGTTTTTACATGTTTCTGTAGAAACTGCACACTACTATGATAAAGGAACCAAGGATTGAAAATTTTATCGTCAATGATAGCTCGTAGGAGTGGCCATCCTTGAAC

Fln Alignment:

sp_v1.1_unigene29111___MQPLPLRASEDILKLMNRTLYREQGFRLWLSFFEIYGGKLYDLLGDRRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLAIXXXXXXXXXXXXRIVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNMKKDQSTXXXXXXXXXXXXXXXXXXEDAREYSDYNQTVANVDAGRRSVDNPQYYSQXXXXXXXXXXXXXXYPFNSREESGFSGMVENNRVNMKEGIAGPVTSQKSSS-AMNSFDTYGDEKVQKVSPTRRKVSRDEKPDKQINWTSKEDGKSEAFNAVRKQQQQFKEDPASNNNAPRLKERVQTDYDNDINXXXXXXXXXXXXHRKEIEDTMDLVREEMKILTEVEQPGSLIDDYVSKLSIVLSRKAASLVSLQARLARFQNRLKEQEILSLKK
D5ACB2_______________MQPLPLRASEDILKLMNRPFYREQGFRLWLSFFEIYGGKLYDLLGDRRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGRTVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNLKKDQSASSLSLPPKDSSSSPPLPLEDAREFSDYNQTVANTDAGRRSVDNPQYYNQSEELGRHPSSLSSSYAFTSREESGFSSLVENNRVNMRDGIAGPVTSQKSSSAAMNSFDPYGDEKVHKVSPTRRKVSREEKPDKQINWISKEDGKSEAFNAVRKQQQQFKEDPASNNTAPRLKERVQTDYDNDINAILQEEEALIAAHRKEIEDTMDLVREEMKILTEVEQPGSLIDDYVSKLSIVLSRKAASLVSLQARLARFQNRLKEQEILSLKK

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
351		20	80		0.999996
458	90		10		0.90298
915	10		90		0.90298
980			90	10	0.90298
1014	90			10	0.90298
1331			27	72	1.0
1438	11			88	0.991528
1444		11		88	0.991528
1772		83		16	0.999991
2175	12	87			0.992554
2177			14	85	0.993533
2178			14	85	0.993533
2179			14	85	0.993533
2204		83		16	0.994512
2784	88		11		0.991528
2785	88		11		0.991528
2798		11		88	0.991528
2833	88	11			0.991528
2986	20	80			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain