SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29102

Length: 1704 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29102

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9S0F8_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	medium chain fatty acid hydroxylase	-	-	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	0.0	69%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LML7

Fln msg:

Fln protein: MVQRPGGVRGFITANPSNVEHILRANFQNYPKGEHFSFFLHDFLGKGIFNTDGELWKMQRKAASYEFNTKSLRNFVVEAVQWEIKNRLMVVLKSACEGGEIIDLQDVLMRFAFDNICKVAFGVDPGCLHPSLPRSQFAEAFNDALDISAGRFFSVFPFLWRIKRKLDIGSERRLREAINVVNEFTMDIIRSRRSEISEGHVREDLLSRFMAAALSDRELFETECDQKGSQKMAMAGEKSELFIRDMMVSFIMAGRDTTSTALTWFFWLISSRPHVQEAIRREILLVTGSRNSIQPEDEWVVFDFDELKGMPYLHAALCESMRLWPPVPVDSKVAAEDDVLPDGTVVPRGWFVSYNIYSMGRMESIWGEDFMDFRPERWLKDGEFVGENPYKFTVFQAGPRICLGKEMAFIQMKSIVASVIHRFSLEVDTGYIPKYVLSITLRMKNGLPVSVRSY*

Protein Length: 456

Fln nts: TTCGTGGAATGGACAGTGGATATCCTTTCCAGAATCCCTTCCCACACATGT_-_ATGGTCCAGCGCCCAGGAGGCGTCCGAGGCTTTATCACTGCGAATCCCTCTAATGTGGAGCATATTCTGAGAGCCAATTTTCAGAATTACCCCAAGGGAGAACACTTCAGTTTCTTTCTCCACGATTTCCTGGGCAAGGGGATCTTCAACACTGATGGGGAGCTGTGGAAAATGCAAAGGAAGGCTGCGAGCTACGAATTCAACACCAAGTCGCTCCGGAACTTCGTGGTGGAGGCTGTTCAGTGGGAAATCAAGAACCGGCTAATGGTGGTGCTCAAGAGCGCATGCGAAGGGGGAGAGATCATAGACTTGCAGGACGTTCTGATGAGGTTTGCATTCGACAATATCTGCAAGGTGGCGTTCGGTGTCGATCCCGGTTGCCTCCACCCTTCTCTGCCCAGGTCCCAATTTGCAGAGGCTTTTAACGATGCTCTTGATATTAGCGCTGGCAGGTTTTTCTCCGTTTTCCCCTTTCTGTGGAGAATCAAGCGAAAGCTTGACATCGGTTCTGAGAGGCGGTTAAGAGAAGCCATTAATGTAGTGAACGAATTTACCATGGACATTATTCGTTCCAGGAGAAGTGAGATCTCTGAAGGGCATGTGAGGGAAGACTTACTTTCAAGATTCATGGCGGCAGCTCTGTCTGATCGGGAGCTATTTGAGACAGAATGCGATCAGAAAGGTTCGCAGAAGATGGCAATGGCGGGCGAAAAATCGGAATTATTCATCAGAGATATGATGGTTAGTTTTATCATGGCAGGGAGGGATACCACTTCGACTGCCTTAACTTGGTTTTTCTGGCTGATTTCGTCTCGACCCCATGTCCAGGAAGCCATTCGCAGAGAAATTTTGCTCGTTACAGGCAGCAGAAATTCCATACAGCCCGAAGATGAATGGGTTGTCTTCGACTTTGATGAACTGAAGGGCATGCCGTATCTCCATGCCGCGCTCTGTGAGTCCATGAGGCTGTGGCCTCCCGTGCCTGTCGATTCAAAGGTTGCTGCGGAAGATGATGTATTGCCAGACGGGACTGTTGTACCCCGGGGATGGTTTGTGAGTTACAATATATATTCAATGGGCAGGATGGAGAGCATTTGGGGTGAGGATTTCATGGATTTCAGACCCGAGAGATGGCTGAAAGATGGGGAATTTGTGGGAGAAAATCCTTACAAATTTACTGTGTTCCAAGCCGGTCCTCGCATATGTTTGGGAAAGGAGATGGCGTTCATACAGATGAAGTCCATTGTGGCATCTGTCATTCATAGGTTCAGTCTGGAGGTAGACACAGGGTACATTCCGAAATATGTATTGTCCATCACTTTGCGAATGAAGAATGGACTGCCTGTCAGCGTGAGAAGTTACTGA___AACAGGGAGGATATCAGGGTAGTGGAAGGTGCCCTGTAACAGATTCCAGCTATATGACTAGTAGTTGCGCCCAAAGGTGCAAAGACACACCGACACCTACGTACACCGGTGTCGTACACCTAAGGTATGGCAGATTTAGAAAATTTGGCTTTCATCATTTGAGTCAATTTATAGTTGTTTTTAGTTTTCCATGTAATTAGTGAGAAACATTTTAGGCGATCTATGCCAGGATGAATTCGACAATATTTAAGTTGATACTTATAATTTAATAGTGAAAGTTTATGAAAT

Fln Alignment:

sp_v1.1_unigene29102___MVQRPGGVRGFITANPSNVEHILRANFQNYPKGEHFSFFLHDFLGKGIFNTDGELWKMQRKAASYEFNTKSLRNFVVEAVQWEIKNRLMVVLKSACEGGEIIDLQDVLMRFAFDNICKVAFGVDPGCLHPSLPRSQFAEAFNDALDISAGRFFSVFPFLWRIKRKLDIGSERRLREAINVVNEFTMDIIRSRRSEISEGHVREDLLSRFMAAALSDRELFETECDQKGSQKMAMAGEKSELFIRDMMVSFIMAGRDTTSTALTWFFWLISSRPHVQEAIRREILLVTGSRNSI--QPEDEWVVFDFDELKGMPYLHAALCESMRLWPPVPVDSKVAAEDDVLPDGTVVPRGWFVSYNIYSMGRMESIWGEDFMDFRPERWLKDGEFVGENPYKFTVFQAGPRICLGKEMAFIQMKSIVASVIHRFSLEVDTGYIPKYVLSITLRMKNGLPVSVRS
B8LML7_______________MIQRPGGVRGIITANPSNVEHILRANFQNYPKGERFSFLLHDFLGRGILNTDGELWKMQRKAASYEFNTKSLRNFVVEAVQWEIKNRLMAVLKNACERGEVIELQDVLMRFAFDNICKVAFGVDPGCLHPSLPRSQFAEAFNDATGISAGRFFSSVPFLWRIKKMLDIGSEKRLREAISVVDEFVMDIIRSRRSEISEGHLREDLLSRFMAAAISDLDQLETECDKNGSQKMAMVSEKSELFVRDMMVSFMMAGRDTTSTALTWFFWLISSRPHIQEAIRREILLVKGNRNSITVEPEDQWVVFDFDELKGMQYLHAALCESMRLWPPVPVDTKVAATDDVLPDGTVVPRGWFVSYSIYSMGRMESIWGGDFMDFRPERWLKDGEFVGENPYKFTVFQAGPRICLGKEMAFIQMKSIVASVIHRFSLEVDSEYVPKYAMSITLRMKTGLPVNVKS

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
587		88	11		0.991528
590	11			88	0.991528
609	88		11		0.991528
658			14	85	0.993533
669		14		85	0.993533
671	85		14		0.993533
705		80		20	0.995505
712	33			66	0.997452
743	25		75		0.996473
761			66	33	0.997452
770	66			33	0.997464
780		33		66	0.997456
1115	75		25		0.996473
1116	25		50	25	0.995533
1117			25	75	0.996473
1118			25	75	0.996473
1119	75		25		0.996473
1175		33		66	0.997452
1263		14		85	0.993533
1443		20	80		0.999996
1447		20	80		0.999996
1457	20	50			1.0
1466	80			20	0.999996
1467			80	20	0.999996
1468	80	20			0.999996
1483	20	80			0.999999
1487			88	11	0.991528
1490	11		88		0.991528
1491	12			87	0.992554
1493	12		87		0.992554
1568	60	40			1.0
1591		75		25	0.996473
1600	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain