SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29097

Length: 1617 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29097

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc ion binding	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	zinc ion binding protein	-	-	59%

Source	GOs	Term	Type	Identity
Blast2go	cytosol	GO:0005829	Cellular Component	59%
Blast2go	phragmoplast	GO:0009524	Cellular Component	59%
Blast2go	nucleus	GO:0005634	Cellular Component	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8V9

Fln msg: your sequence is longer than subject: 366 - 191

Fln protein: MDTRYHSLQENSMESVENFPADNYDDVHGPSPSIDKNAEVNEMSELNFSIQAQQSTCLQPDAGRAAEETSLSTNDEGDGTLNAENATFEARGGFSLGISGGSVGMGASHEAEIHGVEASVHRTESTVGEAELVAEVTENQGQTGDFVPDRGLTGEFVPDETEREDVHGDSHDFTMSHSVGRVFTGSKIGGSTEGESWESDQKSSRTVHHEEGNQPTITHNAVIAGSDYEVSKEEATNRAKFSADEGYTIPGYPPGVVNGAERQFNNGIAREHEAAEFDPIQQHHNFCPWVNGNVAAAGCSSGSIAMALCGWQLTLDALEAYSAQGHIPAVTMESESAASLYKDDQLASVHKLLGRHSMSKNRGHS*

Protein Length: 367

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGCTCATTCTACGAGAGATTCAGCTCATGTCTCTTCCGTTATTGCA_-_ATGGATACACGTTATCATAGTCTACAAGAGAATTCTATGGAAAGTGTAGAGAATTTTCCAGCAGATAATTATGATGATGTACACGGGCCTTCTCCCAGTATTGATAAGAATGCTGAGGTAAATGAGATGTCAGAACTGAATTTCAGCATTCAAGCACAACAGAGTACATGTCTGCAGCCTGATGCTGGACGCGCTGCAGAAGAAACAAGCTTGAGCACTAATGATGAAGGTGATGGGACATTAAATGCTGAAAATGCTACTTTTGAAGCACGAGGTGGATTTAGTTTAGGAATAAGTGGTGGAAGTGTTGGGATGGGTGCAAGCCATGAAGCTGAAATACATGGGGTTGAGGCTTCTGTCCATAGAACTGAGAGCACTGTAGGTGAAGCTGAACTGGTGGCTGAAGTAACAGAAAACCAGGGACAAACAGGTGATTTTGTTCCTGATCGTGGATTAACAGGTGAATTTGTTCCCGATGAAACAGAAAGGGAAGATGTTCATGGGGATAGTCATGATTTCACGATGTCTCATTCAGTGGGAAGGGTGTTTACTGGTTCTAAAATCGGGGGATCAACAGAAGGGGAGTCATGGGAAAGTGACCAAAAAAGCAGTCGCACAGTTCACCATGAAGAGGGAAACCAACCAACAATTACACACAATGCTGTTATAGCAGGTTCTGACTATGAGGTGTCTAAAGAAGAGGCGACAAATCGAGCGAAGTTCTCTGCTGATGAAGGTTATACAATTCCTGGGTATCCTCCCGGAGTTGTCAATGGAGCAGAAAGGCAATTTAACAATGGGATAGCACGAGAGCATGAAGCTGCAGAATTTGATCCTATTCAGCAGCATCACAATTTTTGCCCTTGGGTCAATGGTAATGTTGCAGCTGCTGGTTGTAGTAGTGGTAGTATTGCCATGGCCCTTTGTGGATGGCAGCTTACTCTAGATGCTTTGGAAGCTTACAGTGCACAAGGTCATATTCCTGCAGTAACCATGGAATCTGAGTCTGCAGCATCTTTATATAAGGATGATCAACTCGCTTCAGTACACAAGCTGTTGGGCAGGCACTCTATGTCAAAGAACCGCGGCCATAGCTGA___AGAAGAAGCCTCATTGTTACTCAAATTCACCTGGCTTATGCCAAATCCTGTACTTCGTCATTGAAGTGGATTGGTTATTGCAAAGTCGATTGGAAAGAAGGTTTTCAAGTGTCTCATGTAGGGAATTTCATTGTCTGCAAGTTTTGTGACAGGTTTTGAAAGATAACCTTGGCATGCATGTGCTTTTTACATGGTAAAAGTGCTTTGCTTAAATCTGATTTATTGCATCTTCAAAGTGCAGTCGAACGAATAAACCAAGAATTGAATGACCTTGTTCTCTCTATTGTACTTATTCTACTGAATGATTTTTGGTGAAGTACTTGTGGCTTGTTCATTGAAATCTCATAACCTATTACTTTGTACTATCGTTATTTCTCAATAACGTGGAATGGTATACTGGTGATTCATCAAGTTCAATTTTATTCTATAATGGTATATAATTAATGTT

Fln Alignment:

sp_v1.1_unigene29097___MSHSVGRVFTGSKIGGSTEGESWESDQKSSRTVHHEEGNQPTITHNAVIAGSDYEVSKEEATNRAKFSADEGYTIPGYPPGVVNGAERQFNNGIAREHEAAEFDPIQQHHNFCPWVNGNVAAAGCSSGSIAMALCGWQLTLDALEAYSAQGHIPAVTMESESAASLYKDDQLASVHKLLGRHSMSKNRGHS
D5A8V9_______________MSHSVGRVFTGSKIGGSTEGESWESDQKSSRTIRHGEGNQPTVTHNALIAGSDYEVSKEEATNPGKFSAVEGYTIPGSSSGVVNGAERQFNNGIAREHEAAEFDPIQQHCHYCPWVNSNVAAAGCSSGSIAMALCGWQLTLDALEAYHAQGHIPVVTMESESAASLYKDDQFASVHKLLGRHSMTKNRGHS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
406	75			25	0.996473
407	75			25	0.996473
408			75	25	0.996473
436		25		75	0.996473
449			75	25	0.996473
527			10	90	0.90298
665	90		10		0.90298
895		16		83	0.994512
1122		16		83	0.994512
1147	80			20	0.999999
1149	20	80			0.999999
1150		20		80	0.999999
1151		20	80		0.999999
1158	80			20	0.999999
1160			80	20	0.999999
1187	80		19		1.0
1189	80	19			1.0
1196	80	19			1.0
1197	4		76	19	1.0
1198	80			19	1.0
1199	80		19		1.0
1201	80	19			1.0
1202	80			19	1.0
1314	90	9			0.999842

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain