SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29061

Length: 1094 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29061

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase 65 precursor, putative (EC:1.11.1.7); K00430 peroxidase [EC:1.11.1.7]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	peroxidase 65	-	-	73%

Source	ECs	Term	Type	e value	Identity
AutoFact	Peroxidase.	EC:1.11.1.7	-	0.0	53%

Source	KEGGs	Term	Identity
AutoFact	Phenylalanine metabolism	00360	53%
AutoFact	Methane metabolism	00680	53%
AutoFact	Phenylpropanoid biosynthesis	00940	53%
AutoFact	Biosynthesis of phenylpropanoids	01061	53%
AutoFact	Metabolic pathways	01100	53%
AutoFact	Biosynthesis of secondary metabolites	01110	53%

Source	InterPros	Term	Type	Identity
Blast2go	Plant peroxidase	IPR000823	-	73%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	73%
Blast2go	Haem peroxidase	IPR010255	-	73%
Blast2go	Peroxidases heam-ligand binding site	IPR019793	-	73%
Blast2go	Peroxidase, active site	IPR019794	-	73%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAS6

Fln msg: STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 318 - 334

Fln protein: MCSPSANCSVVAVAVLFLLCSALRIECEQLSVDYYQKTCPQVENIIRAEMIRKQAANPTTAAGTLRLFFHDCFVEGCDASVLISSTPDNKAEKDAEINLSLPGDGFDAIARAKTAIEAKCPGIVSCADILSMATRDLISLIGGPYYPVKKGRKDGRISKSWRVAGNLPLPSMNVDSLTSLFGSKGLTEAEMITLSGAHTVGFTHCKEFLHRIYTYNRTTHIDPTMNFQYAMGLRRACPRANLDPTIVVFNDVNSPKTFDNGFYRNLPQGLGLLASDQILYTDPRSRVLAQRYASDQATFFNAFVAAMDKLGSVGVKTG

Protein Length: 319

Fln nts: ATGGGGCTCTCCTCACACCATTCTTGGTTATCCCATACTCTTCCCTCTCCCGCAACTCGGCAATTACAAACGACCTCTCATCGATCTTAACATTGAATTTCCTCAGCCGGTGGAGAAGGTGCGGAGCGGAGATCGGGAAG_-_ATGTGCAGCCCAAGTGCGAACTGTTCAGTCGTTGCAGTGGCGGTTCTGTTCTTATTGTGCTCAGCCTTGAGAATCGAATGTGAGCAGCTATCGGTGGACTACTACCAGAAAACATGTCCACAGGTGGAGAACATCATTCGAGCGGAAATGATACGAAAACAGGCCGCCAATCCCACCACTGCTGCAGGAACATTGCGCCTCTTCTTTCACGATTGTTTTGTCGAGGGCTGCGATGCTTCAGTGCTCATCAGCTCCACGCCCGATAACAAGGCGGAGAAAGACGCAGAAATAAATCTGTCATTGCCTGGCGATGGCTTCGATGCCATTGCTCGAGCAAAGACTGCCATTGAAGCCAAATGTCCAGGCATTGTTTCCTGCGCGGATATACTATCCATGGCAACTAGAGATCTTATATCACTTATAGGTGGGCCCTACTATCCCGTTAAGAAGGGGCGGAAAGATGGGCGGATCTCGAAGTCATGGAGAGTAGCAGGGAACCTGCCACTGCCATCCATGAATGTGGACAGTCTCACATCTCTTTTTGGATCTAAAGGCCTAACAGAGGCAGAAATGATCACTCTCTCTGGAGCCCACACTGTGGGATTCACCCACTGCAAGGAGTTCCTGCACCGCATATACACCTACAACAGGACCACTCACATCGATCCGACTATGAATTTCCAGTACGCAATGGGTTTGAGAAGAGCATGCCCTCGAGCAAATCTAGACCCCACCATTGTCGTCTTCAACGATGTTAATTCTCCCAAGACATTTGACAATGGCTTCTACAGAAACTTGCCACAGGGTTTGGGTTTGCTTGCCTCGGATCAGATACTTTACACGGATCCCCGTTCCAGGGTTCTTGCCCAACGCTATGCGTCTGACCAGGCAACTTTCTTCAATGCATTTGTGGCGGCCATGGATAAATTGGGCAGTGTGGGTGTTAAGACTGGC

Fln Alignment:

sp_v1.1_unigene29061___IGKMCSPSANCSVVAVAVLFLLCSALRIECEQLSVDYYQKTCPQVENIIRAEMIRKQAANPTTAAGTLRLFFHDCFVEGCDASVLISSTPDNKAEKDAEINLSLPGDGFDAIARAKTAIEAKCPGIVSCADILSMATRDLISLIGGPYYPVKKGRKDGRISKSWRVAGNLPLPSMNVDSLTSLFGSKGLTEAEMITLSGAHTVGFTHCKEFLHRIYTYNRTTHIDPTMNFQYAMGLRRACPRANLDPTIVVFNDVNSPKTFDNGFYRNLPQGLGLLASDQILYTDPRSRVLAQRYASDQATFFNAFVAAMDKLGSVGVKTG
D5AAS6_______________MGKMSSPGTSCAGVAVTVLILLCSALRIGCEQLSVDYYQKTCPQVENIVRAEMIRKQAANPTTAGGTLRIFFHDCFVEGCDASVLISSTPDNKAERDAEINLSLPGDGFDAIARAKTAIEAKCPGTVSCADIISMATRDLISLIGGPYYPVKKGRKDGRISKAWRVAGNLPLPTMNVDRLTALFGSKGLTQAEMITLSGAHTVGFTHCKEFLHRIYSYNMTTHIDPTMNFQYAMALRRACPRVNLDPTIVVFNDVNSPRQFDNGFYRNLPQGLGLLGSDQILYTDPRSRVLAQRYASDQATFFDAFVAAMDKLGSVGVKTG

SNPs (tot: 6)

Position	A %	C %	T %	Probability
689		16	83	0.994512
695	83		16	0.994512
712	83		16	0.994512
741		85	14	0.993533
892		90	10	0.90298
1039	83		16	0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain