SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29055

Length: 771 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29055

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to replicase n=1 Tax=Vitis vinifera RepID=UPI0001985745	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	dna repair protein	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	85%
Blast2go	Thiamine metabolism	00730	85%
Blast2go	Metabolic pathways	01100	85%

Source	GOs	Term	Type	Identity
Blast2go	DNA metabolic process	GO:0006259	Biological Process	85%
Blast2go	cellular response to stress	GO:0033554	Biological Process	85%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	85%
Blast2go	DNA binding	GO:0003677	Molecular Function	85%

Source	InterPros	Term	Type	Identity
Blast2go	DNA recombination and repair protein RecA	IPR013765	-	85%
Blast2go	DNA recombination/repair protein RecA, conserved site	IPR020584	-	85%
Blast2go	DNA recombination/repair protein RecA, monomer-monomer interface	IPR020587	-	85%
Blast2go	DNA recombination and repair protein RecA, C-terminal	IPR023400	-	85%

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
176	33		66		0.997452
237	75		25		0.996473
239		25	75		0.996473
240	75	25			0.996473
241			75	25	0.996473
245	75			25	0.996473
247	75			25	0.996473
248	75	25			0.996473
250	75	25			0.996473
251			75	25	0.996473
411		20		80	0.995493
420	80		20		0.995493
424		20		80	0.995493
596	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain