SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29053

Length: 1374 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29053

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	8.0e-37	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Blast2go	wd-repeat protein	-	-	0.0	85%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	85%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	85%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	85%
Blast2go	WD40-repeat-containing domain	IPR017986	-	85%
Blast2go	WD40 repeat, conserved site	IPR019775	-	85%
Blast2go	WD40 repeat, subgroup	IPR019781	-	85%
Blast2go	WD40 repeat 2	IPR019782	-	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX8

Fln msg: your sequence is shorter than subject: 187 - 508

Fln protein: WFLPSGQQLASGGNDNLLYIWDKSMTSHNPSSQYFHQLDEHCAAVKALAWCPFQNNLLASGGGSSDGSIKFWNTQTGACLNTVDTHSQVCSLLWNRHERELLSSHGPNQNQLTLWKYPSMVKITELTGHTARVLHMAQSPDGYTVASAAADETLRFWQVFGAPDALKKTKTKDAKGSFNMFHTHIR*

Protein Length: 188

Fln nts: TTGGTTTCTTCCTTCCGGCCAACAACTTGCAAGTGGGGGAAATGACAATCTACTCTACATTTGGGACAAGAGCATGACATCCCATAATCCGTCCTCTCAATACTTCCACCAATTAGATGAACATTGTGCAGCAGTCAAGGCCTTGGCATGGTGCCCCTTCCAGAACAATCTTTTGGCATCTGGTGGAGGGAGTTCAGACGGTTCTATAAAGTTTTGGAACACTCAAACAGGTGCCTGCCTGAATACCGTCGACACCCATTCCCAAGTCTGTTCATTGCTGTGGAATAGACATGAGCGTGAGTTATTGAGTTCGCATGGGCCAAATCAGAACCAGTTAACCTTATGGAAATACCCATCCATGGTGAAAATTACTGAACTTACAGGGCATACTGCTAGAGTTCTTCATATGGCACAGAGTCCTGATGGGTACACAGTTGCATCcGCTGCAGCgGATGAAACACTCAGGTTTTGGCAAGTTTTTGGGGCTCCCGATGCCTtAAAGAAGACTAAGACTAAAGAtGCAAAAGGGtCTTTCAACATGTTTCATACTCACATCCGCTAA___GaAGTATCTGTCCAAATTCATGGAATCAGGATGGATGTTCAAGTGAAGGTACTTTGTGAGGCAATGATCCATgTCTTCAGCTGCGTGATAAGCTTTAAAGTGGTTTTAGCAAGTCTTTGGAGCTTCAAAGACGGTTCCAAAAATGATACTTTATGGCTGTTAGCAAGTATCTGATTCACATCTATAAAATGGCCTCCATGCTTCTACACATGGAATGATGATGAGGGGATGCTCAATGTTGCAGATCGTTTAAGGTGCCTTTAAGGAACATGGGATCTTGCCAGCATTCTAAGACTTTCGAGGATGGGTTCAACTCTCCGAAGAAGAATCATACAGAGAAGAGCAGCATGGTTCCTCAATTGCATTTTTTTAATGTCAAGATTCTAAGGTGCGCTCTTTTGTTATTGTTTCTGTACTTAGCTAGTTGCACTACAATTTTCCAGCATAACTAAATTAATAAGTGTCTCTTGTTGATACTATTTGTGCTTCATCTTTATTATCTTTTATGGCATGAATTGTCTTGTAATTTCATTTTATTGTATTGTATTCTTTACTGACAATTGTCTCATTGTAGCTCCTCCCTCTTCCCTTTGGGCATTGATAATCAATATCTATTGATGTCTGCCCCGTAACCTTCCAACGGCATTTTTCAATGCCACCAATCGAGAGGAAAATTTTCCACCCTTCAGCTTCTTAAATTGAAATCAACTTGTAGTCTTTCTGGGATTAATGTTCAAGGCATTGGGAATAACCGAAAGGCATTGGGAATAACTGAAATACAGGAAAAAATGTTGATCAGCAGCCTCCATTGC

Fln Alignment:

sp_v1.1_unigene29053___PSGQQLASGGNDNLLYIWDKSMTSHNPSSQYFHQLDEHCAAVKALAWCPFQNNLLAXXXXXXXXXIKFWNTQTGACLNTVDTHSQVCSLLWNRHERELLSSHGPNQNQLTLWKYPSMVKITELTGHTARVLHMAQSPDGYTVASA---AADETLRFW
B8LPX8_______________PQGTHLAVGTNIGEIQIWDASRCKK------VRTMGGHCTRAGALAWSSY---ILSSGSRDRNILHRDIRVQDDFVRKLVGHKSEVCGLKWSYDDRELAS--GGNDNQLLVWNQQSSQPLLRFNEHTAAVKAIAWSPHQHGILASGGGTADRCLRFW

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
713	33		66		0.999989
714		66	33		0.997452
728	33		66		0.999998
816		33		66	0.997471
862			33	66	0.997452
889		33	66		0.997452
912	25		75		0.996476
921	33	66			0.997452
1000		66		33	0.997452
1006		33		66	0.997453
1010	66		33		0.997452
1016		33		66	0.997456
1020		33		66	0.997452
1027	66		33		0.997452
1033	33		66		0.997452
1035		66		33	0.997452
1039			33	66	0.997452
1047		66		33	0.997452
1051	33			66	0.997454
1115			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain