SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29040

Length: 1025 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29040

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PTAC6; PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6)	-	-	62%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	65%
Blast2go	ptac6 (plastid transcriptionally active6)	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	transcription from plastid promoter	GO:0042793	Biological Process	79%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	79%
Blast2go	plastid chromosome	GO:0009508	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9GU02

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 200 - 325

Fln protein: S*PWLSLKICLLHCDFFIRKVPDPDDDVYDFREMYVTPPDTDVYSIPEVVGEMPKKYARLRKTNYEHVHVTEPPIDHPRDPLCKTEMEVMKVFLMRHYKNKRRDDEDFVLDFEEIYVIDSKTKSISRANVVVNTPGGKNRDRRNEVLIVRDKGTSFKIIPEDKREDPDTIIEIMEWERTKEKLENYLRSFRDYEISNWF*

Protein Length: 201

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATTTGCCTTCTTCACTGTGATTTCTTCATCAGGAAGGTACCAGATCCTGATGACGACGTTTACGACTTCAGAGAGATGTATGTAACTCCGCCAGACACGGATGTTTATTCTATCCCTGAAGTTGTGGGGGAAATGCCTAAGAAGTATGCTCGTTTGAGGAAAACTAATTATGAGCATGTCCATGTTACTGAACCACCAATAGATCATCCTCGGGATCCGCTCTGTAAAACAGAGATGGAAGTGATGAAGGTATTCTTGATGAGGCATTATAAGAACAAGAGAAGAGATGATGAGGATTTTGTGCTGGACTTTGAAGAAATTTATGTTATTGATTCCAAGACAAAGTCAATATCAAGAGCGAATGTTGTGGTTAATACACCAGGAGGCAAGAATCGTGACAGGAGAAATGAAGTTTTAATTGTTCGTGACAAGGGAACTTCATTTAAAATCATCCCAGAGGATAAGAGAGAAGATCCTGATACCATCATTGAGATAATGGAGTGGGAAAGGACAAAGGAGAAACTTGAGAATTATCTCCGGAGCTTTAGAGATTATGAAATATCAAACTGGTTTTGA___AATAGACAGCAAACTATTTTCAAGAGTCAACCTATATTCACCGTTGTTACAAAGATCAGTCATGTTTGAGAACTGTTGAATCCGTGTTCATGGCAATTGACCTCAGAGTACTCTTTGAAGACACGCATACAATGTCCTTGACACTGTTTTATTTGCGTGTGTCTATAAAAAAGACTTTGCTTATGCCGTGGCAAACAATATCTAGTCTTCATGAGGGCCTTTCTTAGGCTGATTTTTTTACTTGTGATGGCTTATATTTGTCCTGAATGATTCTATGACTTGCTTAAGTTGTTCTGGAGTAATGAGCAATACAGTGAGCAAGTGCTTAATCTGAATACCCTCATGTGTATACTGTGATACATTTACAGTTTTGGAGCAAAAGGCTGATTTTAAAGGAAAATAAAATATGTAAGTTAGTAGTGG

Fln Alignment:

sp_v1.1_unigene29040___KICLLHCDFFIRKVPDPDDDVYDFREMYVTPPDTDVYSIPEVVGEMPKKYARLRKTNYEHVHVTEPPIDHPRDPLCKTEMEVMKVFLMRHYKNKRRDDEDFVLDFEEIYVIDSKTKSISRANVVVNTPGGKNRDRRNEVLIVRDKGTSFKIIPEDKREDPDTIIEIMEWERTKEKLENYLRSFRDYEISNWF
B9GU02_______________KISLFDCDFFIRKPPDPDDDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAETDYGGYNVTEPPIDAPRDPFYKSEREIWKVFLFKHYRNRRLGDPDFVLDFDEIYVIDSKTKSITRAKVLVTVPGGRNRDRKTDLLVVRDKGTSFKIIHSSERDDPTTIIEKEEWARSRQDMERHLRKLRDFDVSNWF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
570			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain