SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29037

Length: 3506 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene29037
TTGGACACGGAAACGAGCGGGTTATTAAGAAGCTGTTTCAGGGGTGATGAATTGTGGAGGTTTCGAACTCGAGATCTGCCTTCACAGGACTTGTGGGGGATGAGAGGAATAATAATTAATTGAAGGCAGGCAGGGGATGCAATAAATGCAGTGGAGTGAATATTGTCGTGCACAGTCCTCTCAGAGGGAATTAGATAAGCCATAAGATAAATCGCGCTACTGCTACTACATTAATGCTAGAAAAGTCTTCCATGATTTCCTCAGGGATTTTTGACCAACAGCGGCGCGAGTACGAATCCTTGTGCGAGCGAGCGATCGTTGATCATTGAACACGTACATCCTGGATGTGCAGTGAGATTTAAAGTGGGGATTTTCGAGATTAGCTTGCTCCAGCTGGTATATTTACTCAGTCTGATTCCATCCTGCGACACTGTATTGGACAGGCGAACAAGATCAGATGGCACGGCCTCGCGGGCGATTATCAGAGAGCAGCAGTAGCAGCCGCAGCATCGGTAACGATGAAGAAGCCGCGTCGTTTTTAGATTCTTCGATGAGGTCGCATGTTCGAAGTCATTCGAGATCCATTTCGTGGTCACATTCGCTCAAGCTGTGGCTGAAGCAAGTCAATTTGGTGGATCTGAGCTCAAACCAGTCCTCCAGTCCTCTGCCCTACAAAAAGATCCCCAACAAGTCCTCTGAAAACGGTGGGGCAATGAAGGATCTAGTGGAGCAAATCAATATTCGACCAAGTTCTTCGAAATGTGGCCCTCTATCGATTCTCAAGTGGGTTTTTCTGTTCTTCATCAGTGTTCTCATGTTGATTGCTGCTCTGGGTTCCAGCTTCCAATCGTCAGCACCTTCGCCCAGTGTTTACAGAGGTTACAGGCGACTGAGAGAGCAAGTCATGGCGGAGTTCTCGGATATAGGGCTGTTTTCTCTCCGGGCCAAGGAGCAGCTGGGTCTCTGTGGCAAGGGCGTGGAGGACTTCATTCCCTGCTATAATGTGTCTCAGAATCGAATTCTTGGGTATGCGAATGGAGATGAATACGATCGGCATTGTGGGTTTTCGAGATCAATGCGGCGGCCTTGCTTGGTGCGCCCTCCCAAGGACTACAAGATTCCACTCAGGTGGCCTACTGGCAGGGATGTCATATGGAGCGGCAATGTGAAGATCACCAAAGAACAGCTGCTTTCCTCTGGAAGTCTTACAAAAAGGTTGATGTTGCTGGAGGACAATCAAATATCTTTTCGCTCTGAAGATGCACTCGTGGTTGATGGCGTCGAAGATTATTCACATCAAATTGCAGAGATGATTGGGCTGCGCAATGAATCAGAATTCATTCAAGCTGGTGTTCACACAGTATTGGATATTGGCTGCGGTTTTGGTAGTTTTGGGGCTCATCTCTTCTCCAAAAAGTTGTTAACCATGTGCATAGCTGGATATGAGTTATATGGAAGTCAAGTTCAATTAGCTCTTGAGAGGGGTCTTCCTGCAATGCTTGGATCTTTTATTTCTAGACAACTGCCCTATCCTCCACTGTCTTTTGATATGGTTCACTGTGCAAGGTGCGGCATTGATTGGGAGCAGAAAGATGGTGCTTTCTTGATTGAAGTTGATCGGGTTCTTAAACCTGGTGGATACTTTGTTTGGACATCACCACTGACAAACTTACATGGAGCTACACTGAACAATGCAAACCGGAACAAGTGGAAATTCATTCAGGAGTTCACCCAGAAGCTCTGCTGGATTCTGTTGTCACAACAAGAAGAAACAGTTGTTTGGCAGAAGACGAGCAGTAAAGACTGTTATGCTTCTCGCAATCTTGGAGGACCACCCCCTGTCTGCAATAAAGGGCAAGATGTAGAGTCTCCTTATTATCAGCCACTTCTCTCATGCATTGGAGGAACTCATAGTCACAGATGGATCCCCATTTTGAATCAAACAAGATGGCCTGCTCGTATGATGCCAAGATCAGATTTACTTTCAATCCATGGTTTTCGTACTGAAGAATTCCTTGAAGATAACCAGGCGTGGAGATCAGCACTGAAAGATTATTGGTCCCTACTTACACCTTTGATCTTTTCTGACCATCCAAAGAGACCAGGCGAGGAAGATCCCTTACCCCCATTTAATATGGTGCGGAATGTGATGGACATGAATGCTCGGTATGGTGGTTTGAATGCCGCTTTGTTGGAGGCAGGAAAAACAGTTTGGGTGATGAATGTTATTCCAATGAGCAGTTTAAATACACTTCCTCTGATACTTGACCGAGGATTTTTGGGTGTCTTGCATGACTGGTGCGAGGCATTTCCAACATATCCCAGAACATATGATATGCTTCATGCAGCAGGTCTACTTTCACAAGAATTCAATCATCAATATAAATGTGGGATGCTCGATCTATTTTTAGAGATGGATCGCATACTTAGGCCAGAGGGTTGGGTTGTACTTCGTGATGAAGTTCAAAAAATAGAGGAAGCCAGAGCAATTACAGCCCAATTGCGGTGGGATGCTCGTATAGTCGAACTCGAACACGATAATGAGCAGAGGCTACTTGTCTGTCAGAAACCATTTGTGAGGAAATAGTTCTGTCTTGCCAGATTGGTATACTGGTTAAACAACTATTCACACAGATATCTTCACACATCTGCTCTGTTCAATGACTTGTCTAACCTTTTTAGTAGATTCGTCCTGTATTATTGTTTGCAGCCAAATTGATTAGCTTTTTAGTTCAAATTCTTTCGGAAGATTATTGGAAGGCCATAAAATTGCCCTTCACGTGAGATATCTACCGCTCAAATCTGGACTATGGGAACTCTGTAGCTCCAGTGACAGTTATTCAGTGAAGGCTAGTGTTTGATATTCATTACATAGCGGCGTGCAAAGAACACCTTTGAAATCCAAAGGGTTCCAAAGCTATCATGTCTGTAAGATTAATTAGTACTGTTCCTCACCTCTGGCTATGTAAAATCATATCCAGAGGAAGAAGCTTCTGGTATATTTCTACATCAATTACATTTTCTTATCCAGCAATTATCACGTTCAATGAAATAAGTCTTGTCATGTAAGTTGTTGCACATGTACCATCTGAAAGGGAATGTTATGGAACCTGTGCACTCATTTTGGAAGTTCATTCTTAACCACCTGGTTAAAATTTCAACTTCAACAGTTCAATTTCATGGCAAATTAAGAAAAGTTAAATATCTCCCTGAAGGCAAAATGAGTCGAGGGATCTGCTCTCTGGCCATTATTTTCCCTCAAGTTGAAACTGCATCGAGGTTGTGCCAGCAATCATTTCACGCCCAGTTTTTATTGATAGAAGAGATAAGTTTTACTTTGCTACTATGCAATGTCGGCGTTTAATTTTTACCTTGACACTTACCATGCATTAGCAATCATGTACTTTATCTCTAAATATCAAAGTATAGAAGGGAAAATTTCGATCACTCAAATATTGTACAGCCCAAACCTGTAGCAATTTTGTACTAATTGCTATATTTCTGTT

Ace file of the UniGene sp_v1.1_unigene29037

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9REF5_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	atp binding	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	75%
Blast2go	Tetracycline biosynthesis	00253	75%
Blast2go	Histidine metabolism	00340	75%
Blast2go	Tyrosine metabolism	00350	75%
Blast2go	Phenylalanine metabolism	00360	75%
Blast2go	Tryptophan metabolism	00380	75%
Blast2go	Benzoxazinoid biosynthesis	00402	75%
Blast2go	Selenocompound metabolism	00450	75%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	75%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	75%
Blast2go	Methane metabolism	00680	75%
Blast2go	Porphyrin and chlorophyll metabolism	00860	75%
Blast2go	Carotenoid biosynthesis	00906	75%
Blast2go	Phenylpropanoid biosynthesis	00940	75%
Blast2go	Flavonoid biosynthesis	00941	75%
Blast2go	Anthocyanin biosynthesis	00942	75%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	75%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	75%
Blast2go	Insect hormone biosynthesis	00981	75%
Blast2go	Biosynthesis of type II polyketide products	01057	75%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	75%
Blast2go	Metabolic pathways	01100	75%
Blast2go	Biosynthesis of secondary metabolites	01110	75%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	75%
Blast2go	shoot development	GO:0048367	Biological Process	75%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	75%
Blast2go	homogalacturonan biosynthetic process	GO:0010289	Biological Process	75%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	75%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKS3

Fln msg: your sequence is longer than subject: 710 - 637

Fln protein: MARPRGRLSESSSSSRSIGNDEEAASFLDSSMRSHVRSHSRSISWSHSLKLWLKQVNLVDLSSNQSSSPLPYKKIPNKSSENGGAMKDLVEQINIRPSSSKCGPLSILKWVFLFFISVLMLIAALGSSFQSSAPSPSVYRGYRRLREQVMAEFSDIGLFSLRAKEQLGLCGKGVEDFIPCYNVSQNRILGYANGDEYDRHCGFSRSMRRPCLVRPPKDYKIPLRWPTGRDVIWSGNVKITKEQLLSSGSLTKRLMLLEDNQISFRSEDALVVDGVEDYSHQIAEMIGLRNESEFIQAGVHTVLDIGCGFGSFGAHLFSKKLLTMCIAGYELYGSQVQLALERGLPAMLGSFISRQLPYPPLSFDMVHCARCGIDWEQKDGAFLIEVDRVLKPGGYFVWTSPLTNLHGATLNNANRNKWKFIQEFTQKLCWILLSQQEETVVWQKTSSKDCYASRNLGGPPPVCNKGQDVESPYYQPLLSCIGGTHSHRWIPILNQTRWPARMMPRSDLLSIHGFRTEEFLEDNQAWRSALKDYWSLLTPLIFSDHPKRPGEEDPLPPFNMVRNVMDMNARYGGLNAALLEAGKTVWVMNVIPMSSLNTLPLILDRGFLGVLHDWCEAFPTYPRTYDMLHAAGLLSQEFNHQYKCGMLDLFLEMDRILRPEGWVVLRDEVQKIEEARAITAQLRWDARIVELEHDNEQRLLVCQKPFVRK*

Protein Length: 711

Fln nts: TTGGACACGGAAACGAGCGGGTTATTAAGAAGCTGTTTCAGGGGTGATGAATTGTGGAGGTTTCGAACTCGAGATCTGCCTTCACAGGACTTGTGGGGGATGAGAGGAATAATAATTAATTGAAGGCAGGCAGGGGATGCAATAAATGCAGTGGAGTGAATATTGTCGTGCACAGTCCTCTCAGAGGGAATTAGATAAGCCATAAGATAAATCGCGCTACTGCTACTACATTAATGCTAGAAAAGTCTTCCATGATTTCCTCAGGGATTTTTGACCAACAGCGGCGCGAGTACGAATCCTTGTGCGAGCGAGCGATCGTTGATCATTGAACACGTACATCCTGGATGTGCAGTGAGATTTAAAGTGGGGATTTTCGAGATTAGCTTGCTCCAGCTGGTATATTTACTCAGTCTGATTCCATCCTGCGACACTGTATTGGACAGGCGAACAAGATCAG_-_ATGGCACGGCCTCGCGGGCGATTATCAGAGAGCAGCAGTAGCAGCCGCAGCATCGGTAACGATGAAGAAGCCGCGTCGTTTTTAGATTCTTCGATGAGGTCGCATGTTCGAAGTCATTCGAGATCCATTTCGTGGTCACATTCGCTCAAGCTGTGGCTGAAGCAAGTCAATTTGGTGGATCTGAGCTCAAACCAGTCCTCCAGTCCTCTGCCCTACAAAAAGATCCCCAACAAGTCCTCTGAAAACGGTGGGGCAATGAAGGATCTAGTGGAGCAAATCAATATTCGACCAAGTTCTTCGAAATGTGGCCCTCTATCGATTCTCAAGTGGGTTTTTCTGTTCTTCATCAGTGTTCTCATGTTGATTGCTGCTCTGGGTTCCAGCTTCCAATCGTCAGCACCTTCGCCCAGTGTTTACAGAGGTTACAGGCGACTGAGAGAGCAAGTCATGGCGGAGTTCTCGGATATAGGGCTGTTTTCTCTCCGGGCCAAGGAGCAGCTGGGTCTCTGTGGCAAGGGCGTGGAGGACTTCATTCCCTGCTATAATGTGTCTCAGAATCGAATTCTTGGGTATGCGAATGGAGATGAATACGATCGGCATTGTGGGTTTTCGAGATCAATGCGGCGGCCTTGCTTGGTGCGCCCTCCCAAGGACTACAAGATTCCACTCAGGTGGCCTACTGGCAGGGATGTCATATGGAGCGGCAATGTGAAGATCACCAAAGAACAGCTGCTTTCCTCTGGAAGTCTTACAAAAAGGTTGATGTTGCTGGAGGACAATCAAATATCTTTTCGCTCTGAAGATGCACTCGTGGTTGATGGCGTCGAAGATTATTCACATCAAATTGCAGAGATGATTGGGCTGCGCAATGAATCAGAATTCATTCAAGCTGGTGTTCACACAGTATTGGATATTGGCTGCGGTTTTGGTAGTTTTGGGGCTCATCTCTTCTCCAAAAAGTTGTTAACCATGTGCATAGCTGGATATGAGTTATATGGAAGTCAAGTTCAATTAGCTCTTGAGAGGGGTCTTCCTGCAATGCTTGGATCTTTTATTTCTAGACAACTGCCCTATCCTCCACTGTCTTTTGATATGGTTCACTGTGCAAGGTGCGGCATTGATTGGGAGCAGAAAGATGGTGCTTTCTTGATTGAAGTTGATCGGGTTCTTAAACCTGGTGGATACTTTGTTTGGACATCACCACTGACAAACTTACATGGAGCTACACTGAACAATGCAAACCGGAACAAGTGGAAATTCATTCAGGAGTTCACCCAGAAGCTCTGCTGGATTCTGTTGTCACAACAAGAAGAAACAGTTGTTTGGCAGAAGACGAGCAGTAAAGACTGTTATGCTTCTCGCAATCTTGGAGGACCACCCCCTGTCTGCAATAAAGGGCAAGATGTAGAGTCTCCTTATTATCAGCCACTTCTCTCATGCATTGGAGGAACTCATAGTCACAGATGGATCCCCATTTTGAATCAAACAAGATGGCCTGCTCGTATGATGCCAAGATCAGATTTACTTTCAATCCATGGTTTTCGTACTGAAGAATTCCTTGAAGATAACCAGGCGTGGAGATCAGCACTGAAAGATTATTGGTCCCTACTTACACCTTTGATCTTTTCTGACCATCCAAAGAGACCAGGCGAGGAAGATCCCTTACCCCCATTTAATATGGTGCGGAATGTGATGGACATGAATGCTCGGTATGGTGGTTTGAATGCCGCTTTGTTGGAGGCAGGAAAAACAGTTTGGGTGATGAATGTTATTCCAATGAGCAGTTTAAATACACTTCCTCTGATACTTGACCGAGGATTTTTGGGTGTCTTGCATGACTGGTGCGAGGCATTTCCAACATATCCCAGAACATATGATATGCTTCATGCAGCAGGTCTACTTTCACAAGAATTCAATCATCAATATAAATGTGGGATGCTCGATCTATTTTTAGAGATGGATCGCATACTTAGGCCAGAGGGTTGGGTTGTACTTCGTGATGAAGTTCAAAAAATAGAGGAAGCCAGAGCAATTACAGCCCAATTGCGGTGGGATGCTCGTATAGTCGAACTCGAACACGATAATGAGCAGAGGCTACTTGTCTGTCAGAAACCATTTGTGAGGAAATAG___TTCTGTCTTGCCAGATTGGTATACTGGTTAAACAACTATTCACACAGATATCTTCACACATCTGCTCTGTTCAATGACTTGTCTAACCTTTTTAGTAGATTCGTCCTGTATTATTGTTTGCAGCCAAATTGATTAGCTTTTTAGTTCAAATTCTTTCGGAAGATTATTGGAAGGCCATAAAATTGCCCTTCACGTGAGATATCTACCGCTCAAATCTGGACTATGGGAACTCTGTAGCTCCAGTGACAGTTATTCAGTGAAGGCTAGTGTTTGATATTCATTACATAGCGGCGTGCAAAGAACACCTTTGAAATCCAAAGGGTTCCAAAGCTATCATGTCTGTAAGATTAATTAGTACTGTTCCTCACCTCTGGCTATGTAAAATCATATCCAGAGGAAGAAGCTTCTGGTATATTTCTACATCAATTACATTTTCTTATCCAGCAATTATCACGTTCAATGAAATAAGTCTTGTCATGTAAGTTGTTGCACATGTACCATCTGAAAGGGAATGTTATGGAACCTGTGCACTCATTTTGGAAGTTCATTCTTAACCACCTGGTTAAAATTTCAACTTCAACAGTTCAATTTCATGGCAAATTAAGAAAAGTTAAATATCTCCCTGAAGGCAAAATGAGTCGAGGGATCTGCTCTCTGGCCATTATTTTCCCTCAAGTTGAAACTGCATCGAGGTTGTGCCAGCAATCATTTCACGCCCAGTTTTTATTGATAGAAGAGATAAGTTTTACTTTGCTACTATGCAATGTCGGCGTTTAATTTTTACCTTGACACTTACCATGCATTAGCAATCATGTACTTTATCTCTAAATATCAAAGTATAGAAGGGAAAATTTCGATCACTCAAATATTGTACAGCCCAAACCTGTAGCAATTTTGTACTAATTGCTATATTTCTGTT

Fln Alignment:

sp_v1.1_unigene29037___CGKGVEDFIPCYN---VSQNRI-LGYANGDEYDRHCGFSRSMRRPCLVRPPKDYKIPLRWPTGRDVIWSGNVKITKEQLLSSGSLTKRLMLLEDNQISFRSEDALVVDGVEDYSHQIAEMIGLRNESEFIQAGVHTVLDIGCGFGSFGAHLFSKKLLTMCIAGYELYGSQVQLALERGLPAMLGSFISRQLPYPPLSFDMVHCARCGIDWEQKDGAFLIEVDRVLKPGGYFVWTSPLTNLHGATLNNANRNKWKFIQEFTQKLCWILLSQQEETVVWQKTSSKDCYASRNLGGPPPVCNKGQDVESPYYQPLLSCI----GGTHSHRWIPILNQTRWPARMMPRSDLLSIHGFRTEEFLEDNQAWRSALKDYWSLLTPLIFSDHPKRPGEEDPLPPFNMVRNVMDMNARYGGLNAALLEAGKTVWVMNVIPMSSLNTLPLILDRGFLGVLHDWCEAFPTYPRTYDMLHAAGLLSQEFNHQYKCGMLDLFLEMDRILRPEGWVVLRDEVQKIEEARAITAQLRWDARIVELEHDNE
B8LKS3_______________CDSRYSELIPCLDRNLIYQLKLKLELSLMEHYERHCP-PTERRFNCLIPPPEGYKVPIKWPASRDEVWKVNIPHTH---LAEEKSDQNWMIVNGDKINFPGGGTHFHNGADKYIAALADMLKISGGNLSNGGKIRTVLDVGCGVASFGAYLLPLDIMAMSLAPNDVHQNQIQFALERGIPATLGVLGTERLPYPSMSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYMQ----DEENLQIWNAMSDLVKRMCWKVASKRDQTVIWVKPLTNDCYLKRAPGTKPPLCNSEDDPDASWHVLMKACITPYSDKIHHAKGSGL---APWPKRLTAPPPRLVELGISEEDFVKDTKAWRQRVNSYWK---------HMKSEIEHDTL------RNIMDMNANLGAFGAALKD--KAVWVMNVVPENGPNTLKAIYDRGLMGTLHNWCEAFSTYPRTYDLLHAWNIFSD--IDERGCSIEDLLLEMDRILRPTGFIIIRDKPAIVNYIMKYLAPLRWDSWSSNVEPESD

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
290		40		60	1.0
425		50		50	1.0
429	14	85			0.993533
434	85		14		0.993533
435		85	14		0.993533
872			42	57	1.0
1147		87	12		0.992554
1149	87	12			0.992554
1150		87	12		0.992554
1154		12	87		0.992554
1156	87			12	0.992554
1157			87	12	0.992554
1160	87	12			0.992554
1173		87		12	0.992554
1436	87	12			0.992555
1439		12		87	0.992554
1443	87		12		0.992554
1447	87			12	0.992554
1454	87		12		0.992554
1456	87	12			0.992554
1457	12		87		0.992554
1461		12	87		0.992554
1703	87			12	0.992554
1742		85		14	0.993533
2660	86			13	0.999973
3058	89		10		0.999919
3110	12			87	0.992554
3266	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain