SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29036

Length: 1504 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29036

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	-	-	4.0e-11	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	integral membrane family protein	-	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRG6

Fln msg: your sequence is shorter than subject: 342 - 387

Fln protein: MDPGPLTDEEIRPLMVSSPSTVANSIVEVTTDTLPPQRLKMSIFSVSYGTGRSKERRSKPLEADFTALSEFLIWAWGGSRYSGMVCMALSSLMYSIMGLFVELFAATSAPSYEIIFIRCAVILVAAFIWLRKTGQPLFGLPHVWRLLMARAITGYLSLLGFFYSIQVLPLHDAIVVNFATPFMAAILASFILQEKLGVIELGGIFCNFLGIFLVYQPVPFLQGQRLERNGSTGLITPGGRYYIHTILIALLSAVIGGANYCFIRAAAKASEQPLVTVFAFAAVACPAAAICTLLFQAVASHILGIMFLGKSPSIGGLFGAAIIVISTMAVSYFGNDKPPES*

Protein Length: 343

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCAGAACGGGAAGGACGAAGAGGAAGAGATTACTGTTACCATTGTTGTTTTTTCAGTTAAATTAGTAAAATCATTAAAGGAAGACGAGTTGATTATTGAAGAAAAGAGAATTTAACGAGTGAACGAAGGTGACCAGGTTTTGAAGTGGACGACTTTCGAACCACTCGAGATCCTTTAAACGCCTCAGAAACCTCGAAGAGCTTACAGTTTACCCACATTCTCTGTAACCAATACGTA_-_ATGGATCCAGGGCCTCTGACTGACGAAGAAATCAGGCCTCTCATGGTTTCTTCTCCGTCAACTGTCGCCAATTCCATTGTCGAGGTCACGACGGATACCTTACCTCCGCAGAGATTAAAGATGTCAATATTTTCGGTTTCTTACGGGACAGGCAGATCAAAGGAAAGAAGGAGCAAACCATTGGAAGCAGATTTCACAGCCTTGAGTGAATTTCTTATATGGGCATGGGGTGGATCAAGATACTCAGGAATGGTTTGTATGGCTCTTTCATCACTTATGTATAGCATAATGGGGCTTTTTGTGGAGCTTTTTGCAGCCACATCAGCTCCGTCTTATGAAATAATATTTATAAGGTGTGCGGTCATCCTTGTTGCTGCGTTCATCTGGTTAAGAAAGACTGGGCAACCATTGTTTGGGTTGCCTCATGTTTGGCGCCTATTAATGGCAAGAGCGATTACAGGCTATCTGTCTCTTTTGGGATTCTTTTACAGCATTCAAGTGTTGCCCTTGCATGATGCCATTGTGGTGAACTTTGCAACCCCATTTATGGCAGCCATTCTAGCCAGCTTTATATTGCAGGAGAAATTGGGAGTTATAGAACTTGGAGGGATATTTTGCAACTTCCTAGGAATTTTTCTTGTTTACCAACCAGTTCCATTTTTGCAAGGACAGAGGCTAGAAAGGAATGGCTCAACTGGCTTAATCACACCTGGAGGACGATATTATATACACACCATTTTAATCGCATTATTATCTGCTGTGATTGGGGGAGCTAACTATTGCTTTATACGGGCAGCAGCAAAGGCATCTGAACAACCCTTGGTTACGGTGTTTGCATTTGCAGCAGTTGCTTGTCCTGCAGCTGCAATATGCACGCTTTTATTTCAGGCTGTTGCATCGCATATCTTGGGGATCATGTTCCTAGGCAAGAGCCCATCAATAGGTGGCCTTTTTGGCGCTGCAATTATTGTTATATCAACCATGGCTGTATCGTATTTTGGAAATGATAAGCCTCCGGAGTCTTAA___ATTGTAATTTTAGAGAATTATTCTTTTCTTACAAATTGCTCAAGTTGAGAAATATCTTAGGTGCTTACAGATTGTAAGGAAATCAATTATCATTTATTATTCTTCGCATTGGTTCTGATTTTGCACATTGTATATGTAACTTATATTCTTCTTAGTTCATTACACAACTTTTTTAACAGTCTTTAATGTCAAATTTCAATGCCTTTTGTGTCCTTAC

Fln Alignment:

sp_v1.1_unigene29036___MDPGPLTDEEIRPLMVSSPSTVANSIVEVTTDTLPPQRLKMSIFSVSYGTGRSKERRSKPLEADFTALSEFLIWAWGGSRYSGMVCMALSSLMYSIMGLFVELFAATSAPSYEIIFIRCAVILVAAFIWLRKTGQPLFGLPHVWRLLMARAITGYLSLLGFFYSIQVLPLHDAIVVNFATPFMAAILASFILQEKLGVIELGGIFCNFLGIFLVYQPVPFLQGQRLERNGSTGLITPGGRYYIHTILIALLSAVIGGANYCFIRAAAKASEQXXXXXXXXXXXXXXXXXXXXXLFQ----------------------------------------------AVASHILGIMFLGKSPSIGGLFGAAIIVISTMAVSYFGNDKPPES
B8LRG6_______________MDPAPLDDEEIRPLMVSSPSTVANSIVEVTTDTLAPQCLKMSIFSVSHGTARSKERRNKPMEADFTALSEFLIWAWGGSRYSGMVCMALSSLMYSIMGLFVELFAATSAPSYETIFIRCAVILVAAFIWLRKTGQPLFGLPHVWRLLMARAITGYLSLLGFFYSIQVLPLHDAIVLNFTTPFMAAILASFILQEKLGVIELGGIFCNFLGIFLVYQPIPFLQGQRPESNGSTGLDIPGRQYYIHSILIALLSAVTGGANYCFIRAAAKASEQPLVTVFAFAAVACPSAAMCMFLFQKFVLPGIYPFIGMVIISLLAFVAEVLLARGLQLEKASRATSNLYIEAFASHVLGIMFLGQTPSVSGLFGAAIIIISTMAVSYFGNDKPPES

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
479			11	88	0.923564
482		11		88	0.923564
483	88		11		0.923564
486	11		88		0.923564
487		11	88		0.923564
489	88			11	0.923564
494			88	11	0.923565
497		11	88		0.923564
498	10		90		0.90298
499	90	10			0.90298
512	72	9	18		0.999994
533	18			81	0.999994
733		87	12		0.992554
991	80			20	0.995499
994	80	20			0.995505
995	20			80	0.995505
996	80		20		0.995505
998			20	80	0.995505
1000			25	75	0.996473
1001	75			25	0.996473
1002			25	75	0.996473
1006		80	20		0.995503
1007	80		20		0.995505
1010	75		25		0.996481
1316		16	83		0.994512
1343		14		85	0.993533
1375			50	50	1.0
1400		33		66	1.0
1408		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain