SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29031

Length: 1447 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29031

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeobox protein Pphb7 long form n=2 Tax=Physcomitrella patens RepID=Q8H0E2_9BRYO	-	-	4.0e-25	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	79%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	79%
Blast2go	response to blue light	GO:0009637	Biological Process	79%
Blast2go	positive regulation of cellular transcription, DNA-dependent	GO:0045941	Biological Process	79%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	79%
Blast2go	transcription activator activity	GO:0016563	Molecular Function	79%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	79%

Source	InterPros	Term	Type	Identity
Blast2go	Helix-turn-helix motif	IPR000047	-	79%
Blast2go	Homeodomain	IPR001356	-	79%
Blast2go	Homeodomain-like	IPR009057	-	79%
Blast2go	Homeodomain-related	IPR012287	-	79%
Blast2go	Homeobox, conserved site	IPR017970	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYL7

Fln msg: Separated hits, possible frame ERROR between 776 and 820,

Fln protein: MSFNFGSGNEHAVNGFLHLQSGLFSRRFHANGHGHRSGSGFYGSVLYDNPSSSEEVGLCDDDEISGGLHSKKRRLSVQQVRSLETSFETESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWKTKQLERDYDDxxxxxxxxxxxxxxxxEGQVARLTQEVVAAKGEKKDQKTLISSKSEEENGLQKTTTTTTEEMQSTSPSFCSDADSNRKLLLSSPSRNIQAAVCKTDEENEERNLQALYSNDFHDQLDMYRYLMAAEQNHHGPDWLNFENL*

Protein Length: 276

Fln nts: ACGACTCCGGCCATGGCGAATATATTTATATAGTTATTTTTATGGGGTTTCGAATTCAAGAGATTCAGTGAAGATTTAGACACAGGCAATATATTGTTTTCTACTTTGGTATCTAGATTTAATAATAATTATTAATTATTAAAAGCCTGGTGCATTGTGTGTGTGcAAGGGAGACAGAACGACGCCGAATACTCGCCTCGAGATTCGAAACACTCACCTCCCGGATTACGATAATGGCGATAGCCATTGCCAGGCTGCGGTTGAGCCGGCTTTGTTAATGATAACATTAAAGGTCGATTTACAGAGAGTGCTATAAGTTTGATGGTGGATTAGGAAACAGAGGAGGATTTGCACTGATATACACAACAAGC_-_ATGTCCTTCAATTTCGGGTCCGGTAATGAACATGCGGTGAATGGATTTTTGCATTTGCAGTCCGGCTTGTTCTCTCGAAGGTTTCATGCGAATGGTCACGGCCATCGGAGCGGATCCGGGTTCTATGGCAGTGTTTTGTACGATAACCCAAGCAGCAGCGAGGAGGTCGGGCTGTGCGATGACGATGAGATCAGCGGAGGCCTTCATTCGAAAAAGAGGAGGCTGAGCGTCCAGCAGGTGAGGTCGCTGGAGACGAGTTTTGAAACCGAGAGCAAACTCGAACCGGAGCGGAAGATGCAGCTCGCAGCGGAATTAGGTCTCCAACCGAGACAGGTAGCGGTGTGGTTCCAGAACCGTCGGGCGCGCTGGAAGACGAAGCAGCTCGAACGGGACTACGATGATCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGAAGGACAGGTGGCAAGATTGACGCAAGAGGTCGTGGCCGCTAAAGGTGAAAAAAAGGATCAAAAGACATTAATTTCATCCAAAAGCGAAGAAGAAAACGGTCTGCAGAAGACGACGACGACTACTACAGAAGAAATGCAGAGCACGAGCCCGAGCTTCTGCAGCGATGCCGATTCCAACCGAAAGCTTTTGCTGTCATCTCCTTCCCGCAATATCCAAGCGGCAGTCTGCAAGACAGATGAAGAGAACGAAGAAAGGAATTTACAAGCCCTGTATTCAAATGATTTCCATGACCAGCTCGACATGTATCGATATCTGATGGCGGCGGAGCAGAATCATCACGGCCCGGATTGGTTGAATTTCGAAAACCTTTAA___GACATTAAACTCATCGCCAGTAAATATTATGTAAAGCAGTGTATATTATTTTAATAAGACAGCCATTTTGAAACAGCTTGTTGGTCCGGCTGTGGACCGGGACCTGTGTAAACGACCCGAGGTTCAAATCCGGGTTCGGATGCCATGGAAAACCTGAACGGAACAGGCTTAATTGTGAGCTGATGCTATGTAAATGACTTGGATTTAAATCTAATGATTCGAGTTCGAAAGCTTGCTTGGGATGTCATGCAAG

Fln Alignment:

sp_v1.1_unigene29031___MSFNFGSGNEHAVNGFLHLQSGLFSRRFHANGHGHRSGSGFYGSVLYDNPSSSEEVGLCDDDEISGGLHSKKRRLSVQQVRSLETSFETESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWKTKQLERDYDDLxxxxxxxxxxxxxxxEGQVARLTQEVVAAKGEKKDQKTLISSKSEEENGLQKXXXXXXEEMQSTSPSFCSDADSNRKLLLSSPSRNIQAAVCKTDEENEERNLQALYSNDFHDQLDMYRYLMAA-EQNHHGPDWLNFENL
A9NYL7_______________MSFNFGSGNDHAVNGFLHLQSGLFSRRFHANGYGHRSGSGFYGSVLYDNPSSSDEVGLCDDEEISGGLHSKKRRLSVQQVRSLETSFETESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWKTKQLERDYDDLxxxxxxxxxxxxxxxEGQVARLTQEVVAAKGEKKDQNTLITAKSEEENGLQKTTTTTTEEMQSTSPSFCSDADSNRKLLLSSPSCNIQAAACKTDEENEEENLQALYSNDFHDQLDMYRYLMAAEEQQHHGPDWLNFENL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
258	25		75		0.996473
259		75		25	0.996473
262			20	80	0.995493
263			20	80	0.995493
348			87	12	0.992554
351			12	87	0.992554
352			12	87	0.992554
353			12	87	0.992554
490		90		10	0.90298
896	87		12		0.992554
947	88	11			0.991528
1268		88		11	0.991528
1446			25	75	0.996473
1447			33	66	0.997453
1453		33	66		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain