SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29026

Length: 1614 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene29026 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like protein kinase (Fragment) n=1 Tax=Elaeis guineensis RepID=Q84XU6_ELAGV	-	-	67%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	33%
Blast2go	receptor-like protein kinase	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	stomatal complex morphogenesis	GO:0010103	Biological Process	82%
Blast2go	embryo sac development	GO:0009553	Biological Process	82%
Blast2go	ovule development	GO:0048481	Biological Process	82%
Blast2go	transferase activity	GO:0016740	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	82%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	82%
Blast2go	Leucine-rich repeat	IPR001611	-	82%
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	82%
Blast2go	Protein kinase-like domain	IPR011009	-	82%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 38 aas, your sequence is shorter than subject: 484 - 998

Fln protein: FNIGFLQVATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNHLTGTIPPILGNLTYTGKLYLHSNNLTGSIPPELGNMTKLSYLQLNDNQLTGQIPPELGKLEQLFELNLAGNHLEGPIPENISSCIALNYFNVHGNRLNGTIPLEFRKLDSLTYLNLSSNNIKGAIPVELGHIVNLDTLDLSKNHISGPIPGSVGDLEHLLKLNLSGNKLSGFIPAEFGNLRSIGDIDLSANRLTGLIPQELGQLQNLVSLILNNNSLSGEVPYQLTNCFSLTTLNLSYNNLSGNIPVIKNFTRFTPESFLGNPGLCGNWIGSLCRIYSRPSKASVSTPAIVCISLGSVLLVCMIIIALYRSNQPKPFTKGDANKMGQGSPRLVILHMDMALLMYDDIMRLTENLNEKYIIGYGATSTVYKCILKNCKTIAIKRLYTHHPQSLREFETELETVGSIKHRNLVSLHGYSLSPHGNLLFYDYMVNGSLFDILHGE*

Protein Length: 485

Fln nts: TTCAACATTGGGTTTCTACAAGTGGCTACTCTGTCACTACAAGGAAATAAGTTGACAGGAAGGATTCCAGAAGTGATTGGTCTCATGCAGGCTCTGGCTGTTTTGGACTTGAGTGATAATCATCTTACTGGAACAATTCCTCCCATCTTAGGAAATTTGACTTACACTGGAAAGCTATATTTGCACAGTAATAATCTCACAGGATCCATTCCACCAGAATTGGGGAACATGACAAAGCTGAGCTACTTGCAGCTAAATGACAATCAGCTTACAGGGCAGATTCCACCTGAGCTGGGGAAGTTGGAACAACTGTTCGAATTAAACCTTGCTGGAAATCATCTTGAAGGTCCGATTCCAGAGAACATTAGTTCATGCATTGCTCTCAATTACTTCAATGTACATGGCAACCGTTTGAATGGAACTATTCCTTTGGAATTTCGTAAACTTGACAGCCTCACTTATTTAAACCTGTCATCCAACAACATCAAGGGAGCAATTCCTGTAGAACTGGGACATATTGTAAATCTAGATACACTGGATCTATCTAAAAACCATATTTCTGGACCTATTCCGGGATCTGTTGGGGATTTGGAACATCTTTTAAAATTGAACTTGAGCGGAAATAAACTGAGTGGTTTTATCCCAGCGGAATTTGGAAACCTGAGAAGCATCGGTGATATAGACCTTTCTGCTAACCGATTAACAGGTCTCATTCCTCAAGAACTTGGACAGCTACAGAATTTGGTCTCACTGATACTGAATAACAACAGTTTGTCTGGGGAGGTGCCATACCAGTTGACCAACTGTTTCAGCCTTACTACACTAAATCTCTCCTACAACAATTTGTCTGGCAATATTCCTGTCATAAAGAACTTTACAAGATTTACCCCAGAAAGCTTTTTAGGAAATCCAGGTCTTTGTGGCAATTGGATTGGATCACTTTGTAGGATATACTCCAGACCATCGAAAGCTTCCGTCTCAACACCAGCTATTGTTTGCATCTCGTTGGGTTCAGTTTTATTAGTATGTATGATCATTATAGCTCTCTACCGTTCAAATCAGCCTAAGCCATTTACTAAAGGGGATGCGAACAAAATGGGTCAAGGTTCTCCAAGGTTAGTAATATTGCACATGGACATGGCCCTTCTCATGTATGATGACATAATGCGATTGACAGAAAATTTGAATGAGAAATATATAATTGGTTATGGGGCTACGAGCACAGTTTATAAATGTATTCTCAAGAATTGTAAGACAATTGCTATTAAAAGACTATACACACACCATCCACAAAGTTTGCGGGAATTCGAAACTGAGTTAGAGACTGTTGGAAGCATTAAGCATCGGAATCTTGTGAGTTTGCATGGTTATTCCCTTTCTCCACATGGCAATTTGTTGTTCTACGACTACATGGTGAATGGAAGTCTGTTTGACATCTTACATGGAGAGTGAAAAAGATGAAAAAAACTAGCAAAAATTTACATGTATAATGGTCATATATAGGCTTTAACAGAAAAGATTGGAACCAGCCTTTCATATATAGTGAATGTTTGCTAATGGCCAACTTAGAGAATCTAAGCAGTACATCTTGTATGTAGGATCTTCGAAGAAGAT

Fln Alignment:

sp_v1.1_unigene29026___GFLQVATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNHLTGTIPPILGNLTYTGKLYLHSNNLTGSIPPELGNMTKLSYLQLNDNQLTGQIPPELGKLEQLFELNLAGNHLEGPIPENISSCIALNYFNVHGNRLNGTIPLEFRKLDSLTYLNLSSNNIKGAIPVELGHIV
Q19AV8_______________GLPHISLLELKDNNFEGLISPDIANAKCLSQLVINGNTFTGSLPTEIGELRNLSEIIASNNFLTGALPPSVGKLQQLGKLDLSNNQLSGELPAEISSCKQLGEINLSKNQFSGSIPASVGTLPVLNYLDLSDNLLTGLIPSEFGNL-KLNTFDVSNNRLSGAVPLAFANPV

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
915	77		22		0.999999
916	22	66		11	0.999999
917		77	22		0.999999
920	22			77	0.999999
921		22		77	0.999999
923	77		22		0.999999
924		22		77	0.999999
931		22		77	0.999999
935	22	77			0.999999
936	77	22			0.999999
1158	16		83		0.994523
1355		12		87	0.992554
1356	12		87		0.992557
1436	83	16			0.994519
1437		16		83	0.994519
1438		16		83	0.994519
1475			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain