SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29012

Length: 2811 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene29012
CGTCGTGACCTTGGCTGTCACTCAGATGAGTGACTGGAATCACTGGTCGAAATGAACCAATTAGTTCGAGATCTCGATTGCATAATGACATATGATAAGAGATGCATTATCTGCTAAAGCGTAATTACTGCTATAATTCGGAATGACATATCTCATTCATGATTGGATCATTCATTACGTATTGAAACTTGCATCCCAGCCACGTATGGTCAAGGAGCATGCTTCCTTGACCATGCTTGAGAGACAATCTTTTCTTTATACCGAGAGGGGGCGGAAGGGACAAGTCTCTCGATTTCAGGAGCAAAAGGTCGAAGATAACGAAATAATGAATCAAATGATTATGACAAAATGGCTATTCATCACAATCGCTTCTTGTGATGCTGCGGAACCATGGCAATTAGGATTTCAAGACGCAGCAACGCCTGTGATGCAAGGAATAATTGACTTACATCATGATATCTTTTCTTCCTTAYTCTGATTTTGGTTTTCGTCTTATGGATGTTGGTTCGCGCTTTATGGCATTTTCACTATAGAAGAAATCCAATCCCGCAAAGGATTGTTCATGGAACTACTATAGAGATTATTTGGACCATATTTCCTAGTATTATTCTTATGTTCATCGCTATACCATCATTTGCCCTGTTATACTCGATGGACGAGGTAGTGGTCAATCCAGTCATTACTATCAAAGCTATCGGACATCAATGGTATTGGACTTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTAACTTTTGACAGTTATATGATTCCAGAGGATGATTTAGAATTGGGTCAATTACGTTTATTAGAAGTGGACAATCGAGTGGTTGTACCGGCCAAAACTCCTCTACGTATGATTGTAACATCTGCTGATGTACTTCATAGTTGGGCTGTACCTTCCTTAGGTGTCAAATGTGATGCTGTACCCGGTCGTTTGAATCAGACTTCCATTTTGGTGCAACGAGAAGGAGTTTGCTACGGTCAGTGCAGTGAGATTTGTGGAACCAATCATGCCTTTATGCCTATCGCCGTAGAAGCTGTTTCTTTGAAAGATTATGTTTCTTGGGTATCCAATAAATTCATCTAAAGGCCCCCCCGAATAAGAAGGCCCCCACTTCTCTATTTCCTACCCTAAAAGCCTGAGCTAGATTGAGATAAAAAAGAGTATCCTGTACCTTATAGAAGGTAAGGTTCCCTTTCTTTATTCCCTTAAAAGAGCTAGAAGGTAAGGTAAGGAACGTAGTCGCTTGTCCGCACCGGGCAAGGTAATTGATTGCTTGTCCGCACCGGGCAAGGTAATTGATTGCTTGTCCGCACCGGGCAAGGTCCGGCAGGGCTTGCTTGACGTTAGGAAAGCAAGGAGAACCTGACCTGAGCGAAAGGGAGAACCTTCTTCACTTTCTTTAAGGAGTATGGGTGGAGAAATGCGGGTCGCTGCTGGGAGGTCCAACCCTAAGCTTATCTCTGCGACCATAATGAATAGAATATCTAATGGATTTTCTCTTCCGTTCAGTTGCTAAAAGAGTCATGATGACGTTGACAAATGATATTGAGTTCCACGAATACGAAGGAGGGAAATATGCTATTTGCTGCTATTCTATTCATTTGTGTCTTAAGTTCGAAGGGGATCTTAATATGTAATGAAGAAACGATAGTAGCTTGTTGTTTTATAGGCTTTCTCATATTTATTCAGAGGAGTTTTGGTAATACTTTCAAAGCGATTTTCGACGGGAGAATCGGAGCTATTCAGAGGGAATTGCAGCAATTCCTTAATCCTAACGAAGTGGTTTTTCTGGAATCCAATGAACAACAGCAATTACTTAGGATCAGCTTGCGTTCAATTACGCCGGAAATTGTCGAATTATTACTGAATGAGATGGCACGCTGTGCGCCTAAGTGCGAAAGGACAGTGCAAGCTGTGTTATGCCGAAACCTAAATGTGGAGTTAGCAACACTTCTAAATGCCATTTCTTCCCGTCGCATCCGTCTTCGGGACGATATAGTCACAGGGTTTCACTTCTCAGTGAGTGATCAATTTGTCCCCTGCACCACCGATACGAAAAAAGCTTTTCTCGTAGAACTGATCCGAGAAGGCTTGGTGGTATTAAGATGGTATTAAGAATGGTTTCTCGAAATGGAGGGCGACCCGACCTAAGAACGAACGGAAAGGTTCAATTGACTTATTGGGTGCCCCTCTCAAATAAGTAACTAGCTTTTGGTCGAGCCTGCTTGTCGCATCCTCTCGATGGCGGCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTGGGGGGGTTAACAGTCGAGCCTGCTTTCGCATCCTTATGGTCGAGCACCTAAAGGTCCTTAGGCGGCCCTCACCCATATGATGGGTGAGCGAGAAATCGATGGCGGCGATGGCGATGGTCGAGCAAGCAAGAAATTGATTTGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTAAAAGCCTGCTTACGCATCCTTTCATTTTGATCCAATCAATCAATTAGGTAGGGAATTCGGGAGAGATCTCAATTCGGGATCTTGCGAAGAAAATGACTCTTAAAATGAAAGCCCATTCCTGGGCCTATTGCCCCCCGGGTTTGATCTCTTCTTCATTTAGGTAGGGCCGGCGCCCCTTACGCTTTGCTCAGGTAAGGGAGAACACTTCCTAATCATTGCCTCCCTGCGCCTCTATGCATGCGAGTCTTACTGGCACTATACTCCTTATTCACCCGGCCACCTCTATACAGAACTGGCCCTGGCTTGCTTTATTCAAGCGAACTGCCCCG

Ace file of the UniGene sp_v1.1_unigene29012

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome c oxidase subunit 2 n=9 Tax=core eudicotyledons RepID=COX2_ARATH	-	-	91%
FL-Next	sp=Cytochrome c oxidase subunit 2; Marchantia polymorpha (Liverwort) (Marchantia aquatica). Mitochondrion.	-	-	81%
Blast2go	cytochrome c oxidase subunit 2	-	-	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P26857

Fln msg: Separated hits, possible frame ERROR between 460 and 496, your sequence is longer than subject: 319 - 251

Fln protein: MTYLIHDWIIHYVLKLASQPRMVKEHASLTMLERQSFLYTERGRKGQVSRFQEQKVEDNEIMNQMIMTKWLFITIASCDAAEPWQLGFQDAATPVMQGIIDLHHDxxxxxxxxxxxxxWMLVRALWHFHYRRNPIPQRIVHGTTIEIIWTIFPSIILMFIAIPSFALLYSMDEVVVNPVITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTPLRMIVTSADVLHSWAVPSLGVKCDAVPGRLNQTSILVQREGVCYGQCSEICGTNHAFMPIAVEAVSLKDYVSWVSNKFI*

Protein Length: 320

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATGAGTGACTGGAATCACTGGTCGAAATGAACCAATTAGTTCGAGATCTCGATTGCATAATGACATATGATAAGAGATGCATTATCTGCTAAAGCGTAATTACTGCTATAATTCGGA_-_ATGACATATCTCATTCATGATTGGATCATTCATTACGTATTGAAACTTGCATCCCAGCCACGTATGGTCAAGGAGCATGCTTCCTTGACCATGCTTGAGAGACAATCTTTTCTTTATACCGAGAGGGGGCGGAAGGGACAAGTCTCTCGATTTCAGGAGCAAAAGGTCGAAGATAACGAAATAATGAATCAAATGATTATGACAAAATGGCTATTCATCACAATCGCTTCTTGTGATGCTGCGGAACCATGGCAATTAGGATTTCAAGACGCAGCAACGCCTGTGATGCAAGGAATAATTGACTTACATCATGATATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATGGATGTTGGTTCGCGCTTTATGGCATTTTCACTATAGAAGAAATCCAATCCCGCAAAGGATTGTTCATGGAACTACTATAGAGATTATTTGGACCATATTTCCTAGTATTATTCTTATGTTCATCGCTATACCATCATTTGCCCTGTTATACTCGATGGACGAGGTAGTGGTCAATCCAGTCATTACTATCAAAGCTATCGGACATCAATGGTATTGGACTTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTAACTTTTGACAGTTATATGATTCCAGAGGATGATTTAGAATTGGGTCAATTACGTTTATTAGAAGTGGACAATCGAGTGGTTGTACCGGCCAAAACTCCTCTACGTATGATTGTAACATCTGCTGATGTACTTCATAGTTGGGCTGTACCTTCCTTAGGTGTCAAATGTGATGCTGTACCCGGTCGTTTGAATCAGACTTCCATTTTGGTGCAACGAGAAGGAGTTTGCTACGGTCAGTGCAGTGAGATTTGTGGAACCAATCATGCCTTTATGCCTATCGCCGTAGAAGCTGTTTCTTTGAAAGATTATGTTTCTTGGGTATCCAATAAATTCATCTAA___AGGCCCCCCCGAATAAGAAGGCCCCCACTTCTCTATTTCCTACCCTAAAAGCCTGAGCTAGATTGAGATAAAAAAGAGTATCCTGTACCTTATAGAAGGTAAGGTTCCCTTTCTTTATTCCCTTAAAAGAGCTAGAAGGTAAGGTAAGGAACGTAGTCGCTTGTCCGCACCGGGCAAGGTAATTGATTGCTTGTCCGCACCGGGCAAGGTAATTGATTGCTTGTCCGCACCGGGCAAGGTCCGGCAGGGCTTGCTTGACGTTAGGAAAGCAAGGAGAACCTGACCTGAGCGAAAGGGAGAACCTTCTTCACTTTCTTTAAGGAGTATGGGTGGAGAAATGCGGGTCGCTGCTGGGAGGTCCAACCCTAAGCTTATCTCTGCGACCATAATGAATAGAATATCTAATGGATTTTCTCTTCCGTTCAGTTGCTAAAAGAGTCATGATGACGTTGACAAATGATATTGAGTTCCACGAATACGAAGGAGGGAAATATGCTATTTGCTGCTATTCTATTCATTTGTGTCTTAAGTTCGAAGGGGATCTTAATATGTAATGAAGAAACGATAGTAGCTTGTTGTTTTATAGGCTTTCTCATATTTATTCAGAGGAGTTTTGGTAATACTTTCAAAGCGATTTTCGACGGGAGAATCGGAGCTATTCAGAGGGAATTGCAGCAATTCCTTAATCCTAACGAAGTGGTTTTTCTGGAATCCAATGAACAACAGCAATTACTTAGGATCAGCTTGCGTTCAATTACGCCGGAAATTGTCGAATTATTACTGAATGAGATGGCACGCTGTGCGCCTAAGTGCGAAAGGACAGTGCAAGCTGTGTTATGCCGAAACCTAAATGTGGAGTTAGCAACACTTCTAAATGCCATTTCTTCCCGTCGCATCCGTCTTCGGGACGATATAGTCACAGGGTTTCACTTCTCAGTGAGTGATCAATTTGTCCCCTGCACCACCGATACGAAAAAAGCTTTTCTCGTAGAACTGATCCGAGAAGGCTTGGTGGTATTAAGATGGTATTAAGAATGGTTTCTCGAAATGGAGGGCGACCCGACCTAAGAACGAACGGAAAGGTTCAATTGACTTATTGGGTGCCCCTCTCAAATAAGTAACTAGCTTTTGGTCGAGCCTGCTTGTCGCATCCTCTCGATGGCGGCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTGGGGGGGTTAACAGTCGAGCCTGCTTTCGCATCCTTATGGTCGAGCACCTAAAGGTCCTTAGGCGGCCCTCACCCATATGATGGGTGAGCGAGAAATCGATGGCGGCGATGGCGATGGTCGAGCAAGCAAGAAATTGATTTGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTAAAAGCCTGCTTACGCATCCTTTCATTTTGATCCAATCAATCAATTAGGTAGGGAATTCGGGAGAGATCTCAATTCGGGATCTTGCGAAGAAAATGACTCTTAAAATGAAAGCCCATTCCTGGGCCTATTGCCCCCCGGGTTTGATCTCTTCTTCATTTAGGTAGGGCCGGCGCCCCTTACGCTTTGCTCAGGTAAGGGAGAACACTTCCTAATCATTGCCTCCCTGCGCCTCTATGCATGCGAGTCTTACTGGCACTATACTCCTTATTCACCCGGCCACCTCTATACAGAACTGGCCCTGGCTTGCTTTATTCAAGCGAACTGCCCCG

Fln Alignment:

sp_v1.1_unigene29012___WLFITIASCDAAEPWQLGFQDAATPVMQGIIDLHHDIxxxxxxxxxxxxWMLVRALWHFHYRRNPIPQRIVHGTTIEIIWTIFPSIILMFIAIPSFALLYSMDEVVVNPVITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTPLRMIVTSADVLHSWAVPSLGVKCDAVPGRLNQTSILVQREGVCYGQCSEICGTNHAFMPIAVEAVSLKDYVSWVSNK
P26857_______________WIF-PIAFCDAAEPWQLGFQDPATPMMQGIIDLHNDIxxxxxxxxxxxxWMLVRALWHFHYKRNPIPERIVHGTTIEIIWTIFPSIILMFIAIPSFALLYSMDEVV-DPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRMIITSADVLHSWAVPSLGVKCDAVPGRLNQTSIFIKREGVYYGQCSELCGTNHGFMPIVVEAVSLDDYVSWVSNK

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
1688	83		16		0.994512
1722		83		16	0.994512
1732		83		16	0.994512
1899		50		50	1.0
1910		14		85	0.993533
1917	80		20		0.999999
1920		10		90	0.90298
1927	10	90			0.90298
1960		11		88	0.923564
1961	10		90		0.90298
1964			11	88	0.923564
1965		22	11	66	0.999999
2013		12		87	0.992554
2047	88		11		0.923564
2069		88		11	0.991528
2070	88		11		0.991528
2072			11	88	0.991528
2100		85		14	0.993533
2181		50		50	1.0
2228		25		75	0.996473
2232		25		75	0.996473
2449	85	14			0.993533
2647	60	40			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain