SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28997

Length: 1425 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28997

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nodulin family protein	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	nodulin family protein	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nodulin-like	IPR010658	-	0.0	70%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	0.0	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 158 aas, your sequence is shorter than subject: 440 - 626

Fln protein: MGVAHSPPSSSGAVIKWVGFVTAIWVQAIAGNNYTFSNYSVALKSILDLNQVQLNNLSVAKDVGKAFGLVAGFASDYLPTWLILLIGSLEGFLGYGAQWLVLSQRIRPLPYWQMCIFLCMGGNSTTWMNTAVLVTCMRNFRRNRGPVVGILKGYIGLSTAIFTDLCTALFASSPSSFVLMLTLIPGIVCVTSMIFLRPVPCSADEREEKEEAQSFSTFNVIAIIVAVYLLVFDITGNHGIVLSRIFAGFLLVLLAAPLVVPLKIFILKRYSRGEQLIPSFWKWNSASRQSQDIEKPQLREPLLTNMVKAEGAENPEISVQAKAESRSTELQPSQGQSTENQIVSNPTPPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGYVDVSMFVSLISIWGFFGRIGAGSISEHFIRFLEIFLFTNVLVC*

Protein Length: 441

Fln nts: ATGGGGTGTACTGTGTTGTTACGCTAGAGTAAAAGTCGGACTGGTTGTTGTGCTCGAGTTTCGAACGACAGGCGTCTTGTTTTGCA_-_ATGGGCGTTGCACATTCTCCTCCATCGTCATCCGGGGCCGTGATCAAGTGGGTTGGGTTCGTGACGGCCATCTGGGTGCAGGCCATTGCCGGGAACAATTACACCTTCTCCAACTATTCCGTGGCGCTTAAATCTATTCTTGATTTGAATCAGGTGCAGTTGAATAATCTCAGCGTCGCCAAGGATGTCGGGAAGGCCTTCGGTCTTGTAGCAGGGTTTGCTTCTGATTATTTACCTACCTGGCTCATTTTGCTCATCGGTTCTCTCGAAGGGTTTCTGGGTTATGGCGCACAATGGCTTGTGCTCAGCCAGAGGATTCGACCCCTGCCCTATTGGCAGATGTGCATTTTTTTGTGCATGGGAGGTAACAGCACCACCTGGATGAACACGGCGGTGCTTGTGACGTGCATGAGGAATTTCCGCAGGAACAGGGGGCCTGTTGTTGGAATACTCAAGGGTTACATCGGTCTCAGCACCGCCATTTTCACCGACCTCTGTACCGCCCTCTTCGCTAGCAGTCCATCGTCTTTCGTGCTCATGCTCACCCTTATCCCGGGCATCGTGTGTGTGACTTCCATGATATTTCTGCGCCCTGTTCCTTGTTCCGCCGACGAAAGAGAAGAAAAAGAAGAAGCTCAGAGCTTCTCTACATTCAATGTCATAGCAATCATCGTGGCCGTTTATTTGCTTGTCTTTGACATCACTGGTAATCACGGAATCGTGCTCTCACGCATTTTTGCAGGCTTCTTGCTCGTTCTTCTCGCAGCGCCTCTGGTCGTTCCTCTAAAGATTTTCATTCTAAAAAGGTATTCTAGAGGCGAGCAACTGATTCCATCTTTCTGGAAATGGAATTCCGCGAGCAGGCAATCGCAAGATATAGAAAAACCACAACTCAGAGAACCCTTATTAACGAACATGGTGAAAGCAGAGGGGGCAGAAAACCCTGAAATATCTGTGCAGGCTAAAGCTGAAAGCCGTTCTACCGAACTACAGCCTTCACAAGGCCAAAGCACTGAGAACCAGATTGTATCCAATCCTACCCCTCCTCGTATAGGCGAGGATCACACTATATTTCAGGCGATACAGAAGTTCGACTTCTGGTTATTATTTTTCGCCTTTCTTTGTGGTGTGGGGACGGGCATGGCGGTCATCAATAATATGGGCCAGATTGGTCTTGCCATGGGCTACGTTGATGTGTCCATGTTTGTTTCTTTAATTAGTATCTGGGGATTCTTTGGAAGGATTGGAGCAGGGTCCATCTCCGAACATTTTATAAGGTTTCTGGAAATTTTTCTATTTACAAATGTTCTTGTATGCTGAGAATATCTCATTTAATATC

Fln Alignment:

sp_v1.1_unigene28997___MGVAHSPPSSSGAVIKWVGFVTAIWVQAIAGNNYTFSNYSVALKSILDLNQVQLNNLSVAKDVGKAFGLVAGFASDYLPTWLILLIGSLEGFLGYGAQWLVLSQRIRPLPYWQMCIFLCMGGNSTTWMNTAVLVTCMRNFRRNRGPVVGILKGYIGLSTAIFTDLCTALFASSPSSFVLMLTLIPGIVCVTSMIFLRPVPCSADEREEKEEAQSFSTFNXXXXXXXXYLLVFDITGNHGIVLSRIFAGFXXXXXXXXXXXXXKIFILKRYSRGEQLIPSFWKWNSASRQSQDIEKPQLREPLLTNMVKAEGAENPEISVQAKA------------------------ESRSTELQPSQGQSTENQIVSNPTPPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGYVDVSMFVSLISIWGFFGRIGAGSISEHFIR
B8LRH5_______________MGVAHSPSRRSGSVIKWVGFVTAIWVQAIAGNNYTFSNYSVALKSILDVNQVQLNNLSVAKDVGKAFGLVAGFASDYLPAWLILLIGSLEGFLGYGAQWLVLSQRIRPLPYWQMCIFLCMGGNSTTWMNTAVLVTCMRNFRRNRGPVVGILKGYIGLSTAIFTDLCSALFASSPSSFVLMLTLIPGIVCVTSMIFLRPVPCSADEREEKEEAQSFSTFNVIAITVAVYLLAFDITGKHGIVLSRTFAGFLLVLLAAPLVVPLKLFIKEKNSRGEQLIPSFWKWKSANTQFLDIEK-QVREPLLTNVEEAKGAENPETSVQAKAESIATEPRPSQSESVATEPWPSQSESVTTEPRPSQSESVENQIVCN-SKPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGFVDVSMFVSLISIWGFFGRIGAGSISEHFIR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
997			57	42	1.0
1034	16		83		0.994512
1194		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain