SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28993

Length: 1499 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28993

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin reductase n=2 Tax=Picea sitchensis RepID=A9NXV4_PICSI	-	-	85%
FL-Next	sp=Thioredoxin reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	thioredoxin reductase	-	-	88%

Source	InterPros	Term	Type	Identity
Blast2go	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	88%
Blast2go	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	88%
Blast2go	Thioredoxin reductase	IPR005982	-	88%
Blast2go	Pyridine nucleotide-disulphide oxidoreductase, class-II, active site	IPR008255	-	88%
Blast2go	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	88%
Blast2go	Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain	IPR023753	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU83

Fln msg:

Fln protein: MGTTGEAELERMRTATCIVGSGPAAHTAAIYTARAELKPILFEGWMANGIAPGGQLTTTTDVENFPGFPQGIMGMDLTEKFKEQSLRFGTRVFTETVVRLDLSVRPFRLYTDTKQVDADTVIIATGAVAKRLDFPGAGEGEDGFWNKGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTEVLKAFGNERGLLSGLNLRNIVKNEESSLEVSGLFFAIGHEPATKFLEGQLELDSDGYIVTNPGTTQTSISGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHFLQEVGVQEGKYSSSL*

Protein Length: 342

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGGCCGAGTGATTGATCGAAAAGAAGAAGAAACATATCTCTGTTGTCGTCGACAAATTCGTTCAGGAAGAGA_-_ATGGGAACGACGGGGGAGGCAGAGTTGGAAAGGATGAGAACGGCCACATGTATAGTAGGGAGCGGACCGGCGGCGCACACGGCTGCCATATACACCGCGCGGGCGGAGCTGAAGCCCATTCTCTTCGAAGGATGGATGGCCAACGGAATCGCCCCCGGCGGCCAACTCACGACTACTACTGACGTAGAAAACTTCCCAGGGTTCCCACAGGGGATAATGGGGATGGACTTGACAGAGAAATTCAAGGAGCAGAGTCTCCGTTTCGGGACGCGGGTTTTCACGGAGACAGTTGTGCGCCTCGATTTGTCTGTGAGGCCATTCAGGCTTTACACGGACACAAAGCAGGTGGACGCCGATACTGTTATCATTGCCACAGGGGCGGTGGCAAAGCGCCTGGATTTTCCGGGTGCCGGCGAGGGAGAAGACGGGTTCTGGAACAAGGGCATCTCCGCCTGCGCCGTTTGCGATGGCGCCGCTCCCATTTTCCGCAACCGACCGCTGGCGGTGATCGGGGGCGGAGACTCTGCCATGGAGGAGGCGAACTTTTTGACTAAGTACGGTAGCAAAGTTTACATCATTCACAGGCGGGATGCCTTCAGGGCCAGCAAGATCATGCAGAAGAGGGCGCTGGATAACCCCAAGATCGAGGTCATATGGAATACGGAGGTCCTCAAAGCTTTTGGGAACGAGAGAGGCTTGCTCAGTGGACTCAATCTGCGGAACATAGTGAAAAATGAGGAGTCGTCGTTGGAAGTGTCAGGGCTGTTCTTCGCCATCGGGCATGAGCCGGCCACAAAGTTTCTGGAGGGGCAGTTGGAGTTGGACTCAGACGGTTACATTGTGACAAATCCTGGAACCACTCAGACGAGTATATCGGGGGTTTTCGCCGCCGGAGATGTTCAGGACAAGAAATGGCGCCAAGCCATCACCGCTGCTGGCACAGGATGCATGGCAGCACTAGAAGCCGAGCACTTTTTACAGGAGGTAGGGGTACAAGAGGGCAAGTATAGTTCATCGCTTTAG___GTGGACACGGGTGATATTTACAGTTCCAAACAGAAGTCTTCTTTTTCCGTACTCTCCATAGAACACTCTTCTATTCAGCTTAGTTGTGGGTCTGAATTTTACTATTAACGCTATATGCTATATAACAGCATCAAATGACCTTTCCCATTTTTCCCCATGGAGGTATTTATTCACTTTGTACTATGTTATTTTTATGAGTTATGAAAAGAGTCCGGATTACCTTTTCCATTGAAGAGATGAGTCCGGATTACCTTTTCCATTGGAGAGATGTTTATATTATTTTAAGTAGTGTGTCTTGAATTTTTCGATATGTTTACTTAATTAATTATAAATGGCTAAACTTTGTTATTATACACGGTTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene28993___MGTTGEAELERMRTATCIVGSGPXXXXXXXXXXXXELKPILFEGWMANGIAPGGQLTTTTDVENFPGFPQGIMGMDLTEKFKEQSLRFGTRVFTETVVRLDLSVRPFRLYTDTKQVDADTVIIATGAVAKRLDFPGAGEGEDGFWNKGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTEVLKAFGNERGLLSGLNLRNIVKNEESSLEVSGLFFAIGHEPATKFLEGQLELDSDGYIVTNPGTTQTSISGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHFLQEVGVQEGKYSSSL
A9NU83_______________MGTTGEVELERMRVATCIVGSGPAAHTAAIYTARAELKPILFEGWMANGIAPGGQLTTTTDVENFPGFPQGIMGMDLTEKFKEQSLRFGTRVFTETVVRMDLSVRPFRLYTDTKQVDADTVIIATGAVAKRLDFPGGGEGEDGFWNKGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNAEVLKASGNERGLLSGLDLRNTVTGEASVLEVFGLFFAIGHEPATKFLEGQLELDTDGYIVTKPGTTQTSIPGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHFLQEIGAQEGKYSSLL

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
198		80		20	0.995493
200		20	80		0.995493
201		20	80		0.995493
202		60		40	1.0
203			80	20	0.995493
210	80	20			0.995493
212		20	80		0.995493
213		80		20	0.995493
215	20	80			0.995493
770	14		85		0.993533
772		85	14		0.993533
773		85	14		0.993533
774			14	85	0.993533
781	12			87	0.992554
783			12	87	0.992554
784			12	87	0.992554
806		85		14	0.993533
823	11		88		0.991528
824			90	10	0.90298
825	90		10		0.90298
826	90		10		0.90298
827		90	10		0.90298
1186			7	90	0.999998
1282		23		76	1.0
1406	10		90		0.90298
1408	10		90		0.90298
1432		16		83	0.994513

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain