SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28992

Length: 1447 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28992 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cation efflux protein/ zinc transporter, putative	-	-	58%
FL-Next	sp=Metal tolerance protein 8; Oryza sativa subsp. japonica (Rice).	-	-	59%
Blast2go	cation efflux protein zinc	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to zinc ion	GO:0010043	Biological Process	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cation efflux protein	IPR002524	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q8H329

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 173 - 316

Fln protein: MEKNLSNLGHSNTAELGKSKNHQHVDHNMEGIFLHVLADTLGSVGVVISTLLLKYKGWMAADPVCSIFISIMIISSAIPLLRNSAEILLQRVPRFNEHDIKQAFKVIQNLNGVHDLQNIHVWSFTNKEVIATLHLHISAESDKTSIGNQVAHLLHDAGVKDLTLQMESSGDS*

Protein Length: 174

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGAACCATGAGCAGCATCAACTGATTGTGTCATCAAACGAACATGGTAAGCATAACCACTCTCGTGCACATGATCAGCTGATGTGGGGCGAAGATGGGCACAAACATTGTCTAGATGATTCAGAGAAAAAAATGGTGCTCCACAGGATGAAGAAACAAGGTCTGCCTGTACGTCTCACCATGTTGGTGACACCAGTGAAGATCATCAACATTGTGAAAACAACCATTTACATACCCATTCTCATTCTGGACACGAGCATTCTCATTTGGAGCATAGCCATTCTCATTCGGGACACAAGCATTCTCATTTGGAGCATAGCAATTCTCATTCAGGACACGAGCATTCTGATTTGGAACTTAGCCGTTCTCATTCGGGACATGGGCATTCTTATTTGGAGAAGAGCCTTTCCAACTCGGGACATGAGCATTCTCATTCTGGACATGGGCATTCACTC_-_ATGGAGAAGAACCTTTCCAATCTGGGGCATAGTAATACAGCGGAACTCGGCAAGTCCAAGAATCACCAACATGTTGATCACAATATGGAAGGTATTTTCTTGCACGTCTTAGCAGATACTCTGGGGAGTGTGGGGGTAGTTATCTCTACCCTTCTGCTAAAATATAAAGGTTGGATGGCAGCAGACCCGGTTTGCTCAATATTCATTTCAATTATGATTATTTCATCTGCCATTCCTTTGCTTAGGAATTCAGCGGAGATATTGCTGCAAAGAGTACCTAGATTCAATGAGCATGACATAAAGCAGGCATTCAAGGTTATCCAAAACCTGAATGGGGTGCATGACCTTCAAAACATCCATGTGTGGAGCTTCACAAACAAGGAAGTTATAGCAACTCTTCATCTGCATATTTCTGCTGAAAGTGACAAGACTTCAATTGGGAACCAGGTAGCCCACTTGCTTCATGACGCTGGAGTCAAGGATTTGACGCTTCAGATGGAATCTTCGGGAGATTCTTAGGTACTGATTCTAACCATCATTTATATCAGATGCAGCAGACTGATCTGTTTTGTGGCATCTGCAGGTAATGGGCTTGCTTTCTGACATTTTACCTAACTTTCAAATAGGTTTTAGATGATGACTTTTTTCGGTTCTTTGTAATTGTGATTCATCTGATCCAAAATGTCCTAACATCAAACCCTTTAAACTGCTGTAGTAGGAGCATCTGCAAATGTTTTCCTTGCATTGAAAAGACACCTAAATAACTCTATGTTGCATCCAACAGAAGATCAATAGTATAGATCTTAGAATATGAAGTTGATATCAAAAGAATGGATTCATAACATCAAATGTCAAGGTAATTGAGTATCTAGGTTTCATTTTAGAATTCCTCAAGCAAGAGGCTTTAGCCTGAAATTCCTTAGAAATGACGTTTAAGCTTTGCAGAGCTGAGTCCTCTGACCATACA

Fln Alignment:

sp_v1.1_unigene28992___EKNLSNLGHSNTAELGKSKNHQHVDHNMEGIFLHVLADTLGSVGVVISTLLLKYKGWMAADPVCXXXXXXXXXXXXIPLLRNSAEILLQRVPRFNEHDIKQAFKVIQNLNGVHDLQNIHVWSFTNKEVIATLHLHISAESDKTSIGNQVAHLLHDAGVKDLTLQME
Q8H329_______________EAHSCNGGLQSSENHNKSRNRHHIDHNMEGIFLHVLADTMGSVGVVISTLLIKYKGWLIADPICSVFISIMIVSSVLPLLRNSAEILLQRVPRSLEKDIKEALDDVMKIKGVIGVHNFHVWNLTNTDIVGTFHLHITTEADKSSIREKASDIFHEAGIQDLTIQIE

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
612			90	10	0.90298
618		11		88	0.923568
619	11			88	0.923567
620			11	88	0.923567
621		11		88	0.923567
622		11	88		0.923564
630		11		88	0.923564
635		88	11		0.923564
655	25	75			1.0
677	90		10		0.90298
764	62			37	1.0
800	20	80			0.995493
801	80	20			0.995493
874	33		66		0.997452
1172	33		66		1.0
1206	50		50		1.0
1207			42	57	1.0
1210	42			57	1.0
1211		42		57	1.0
1212	42			57	1.0
1213			42	57	1.0
1221			42	57	1.0
1223		42	57		1.0
1225		42		57	1.0
1230			42	57	1.0
1282		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain