SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28991

Length: 1334 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28991

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RanBPM-related [Arabidopsis thaliana] gb\|AAF80129.1\|AC024174_11 Contains similarity to an unknown protein product from Homo sapiens gi\|7020818. ESTs gb\|T45317, gb\|AV561025, gb\|AV524849 come from this gene [Arabidopsis thaliana] gb\|AAM62740.1\| unknown [Ara	-	-	8.0e-32	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	protein	-	-	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ran binding protein, CRA domain	IPR019589	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTL8

Fln msg: Overlapping hits, possible frame ERROR between 613 and 610,

Fln protein: MQNSKAINDNDVRNIVLSYLMHNCFKETAETFISCTGMKQPADYPVDIDKRKPIYNFALEGNALKAIELTNQLAPELLQENKDLHFDLLSLHFVELVRKRKCTEALVFAQNELTAFGKQDRYVEKLExxxDCMALLAYEEPEKSPMFYLLSMDYRQSVADSLNRAILAHANLPSYTSMERLIQQTTVVRQWLHHELGKDGPPLFSLPAFLKN*

Protein Length: 214

Fln nts: TGGCCAGGTTACGCAGGCAATCTCAAATTCATGACAAGTATGTCCAATAAAAAGGAAAGTCAATGTTTTATTTTTTTCGAAAATTGGAACGGCTTATGTGATCTGCGAAGATGATAAAGTAAAGTCGGGTTTTAACGAAGAAATAACAGGCGGTGAAGAGGTCGAATCCCGTGACCCGCTTACCTCCTCACCTATACTCCATCGATCCAACTTATCAACACCGGTC_-_ATGCAGAACAGTAAGGCTATCAATGACAATGATGTCCGTAATATTGTGCTCTCATACCTGATGCACAATTGTTTCAAAGAAACTGCAGAAACCTTTATCTCTTGCACAGGGATGAAGCAGCCAGCTGACTATCCTGTTGATATTGATAAGAGAAAACCAATTTACAATTTCGCTTTGGAAGGAAATGCTCTGAAGGCTATAGAACTTACAAACCAGCTTGCCCCTGAACTCCTACAGGAAAATAAGGATTTACATTTTGATCTTTTGAGTCTTCATTTTGTTGAGCTTGTCCGCAAGAGGAAGTGCACTGAGGCTTTGGTGTTTGCTCAGAATGAGCTAACAGCATTTGGAAAGCAGGACAGATATGTTGAGAAATTAGAAxxxxxxxxxGATTGCATGGCACTTTTAGCTTATGAGGAGCCTGAAAAGTCACCCATGTTTTATCTTTTGAGTATGGACTATCGGCAAAGTGTAGCTGATTCACTGAATAGAGCCATCTTGGCACATGCTAACCTGCCTAGCTATACATCCATGGAAAGACTTATACAGCAAACAACAGTTGTGAGACAATGGCTGCATCATGAACTTGGAAAGGATGGGCCTCCTCTCTTTTCGTTGCCTGCATTTCTGAAGAATTAG___ACACATGAAGAATACATAAGAGAATGTGTGTTCATCATTCATAGTCTACTTGTCTAATCAAGTACGTGGCCTCTGTATGTATTATGAACGGTCATTGTTAAAGTCTATGGAACCTCTTGTATTAGGTTGGGAATATAATGGCTTGCCTATTGTCGAGCACTTATAATTCCTTTTTAAAAGTATCAATTCATTCATTTTTCTGTTCCACAGCGTGCATTTTTTTAGCTCCCTGATAAAAAGATTAAAAATAGGTGGTCTAGTGGTAGGTTCTCTTTGGATTGACTATGAAGAATGCATTATGTTGTTCGACGCTTTTCTGTAGGGAGTGCATATTTTTGCACTTATGTAACCAAGTTGCCCATTCCTTGTATGAATCCCATCTGTTCTCTGATTATGATAATGGTTGTGCTTGGCCTGTAGTAAGAGACATGGCCTGTTTCTTGGTTTTTGGAATTAGTTTAATATTATGT

Fln Alignment:

sp_v1.1_unigene28991___MQNSKAINDNDVRNIVLSYLMHNCFKETAETFISCTGMKQPADYPVDIDKRKPIYNFALEGNALKAIELTNQLAPELLQENKDLHFDLLSLHFVELVRKRKCTEALVFAQNELTAFGKQDRYVEKxxxxMALLAYEEPEKSPMFYLLSMDYRQSVADSLNRAILAHANLPSYTSMERLIQQTTVVRQWLHHELGKDGPPLFSLPAFLKN
A9NTL8_______________MQSNKTINDNDVRNIVLSYLMHNCFKETAETFISCTGMKQPADYPVDIDKRKPIYNFALEGNALKAIELTNQLAPELLQENKDLHFDLLSLHFVELVRKMKCTEALLFAQNELTAFGKQDRYVDKxxxxMALLAYEEPEKSPMFYLLSMDYRQSVADSLNRAILAHANLPSYTSMERLIQQTTVVRQWLNQELGKDGPPLFSLPAFLKN

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
353	90		10		0.90298
454		85		14	0.993533
458	85	14			0.993533
460		85	14		0.993533
463	14	85			0.993533
464		85	14		0.993533
472	71	14			0.984337
473	85	14			0.993533
487	85		14		0.993533
489		14		85	0.993533
490			14	85	0.993533
494		14		85	0.993533
498			14	85	0.993533
499			14	85	0.993533
500		14	85		0.993533
501	83			16	0.994512
506		16		83	0.994512
657	85		14		0.993533
707			83	16	0.994512
805		14		85	0.993533
810	85			14	0.993533
814	85	14			0.993533
815	85			14	0.993533
828			71	28	1.0
829		14	85		0.993533
845	14		85		0.993533
912		11		88	0.991528
915		11	88		0.991528
916			11	88	0.991528
918		88	11		0.991528
922	88	11			0.991528
926	84		15		0.999986
1278	11			88	0.991528
1295		87		12	0.992554
1325	33			66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain