SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28971

Length: 1211 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28971 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	methyltransferase	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	65%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Methyltransferase type 11	IPR013216	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6GVK0

Fln msg: your sequence is longer than subject: 286 - 248

Fln protein: MGQRKGFEAGRARKWLLAVLLLLLLAVATAIFCTCLRYLISEQKQDRAARHCMNACNHELMKRPNRNIDLSTGGSAGASELIRPRRAFRSYEEYIELQLNKTLNPRLRKLWTSRDWRRKVDVFSGMFRGLMKGHLLRPRSKALCIGARVGQEVVALKEIGVPDAIGMDLVPYPPLVIHGDMHSHPFPDNTFDFEFSNVFDHALYPSLFVSEIERTLKPGGVAVLHVAVHKRGDKYSANDLYSADPLIALFKNSSLLHIRRVDGFGLDTEIALRKFNIDATASSVD*

Protein Length: 287

Fln nts: TTTTAACTTTAGACAACTTTAGTCGTCAATGTCATCGGGTTCCTTGCCATTAATACCCATAGAACGGGGAGCTGCTAACCTTATCTCGATGGATAACAGCCTCGTGATGGTCGTCGGCTCACCGCAGGAGCGAAGGGAGTGGCATTTGCGTGGCATGACACGATTCCACGACAACAATCCTTTCTGCTACGATTCTCATTCTTGAAAACCACTAGAGAAACTCTATAACTCGAGCCTTGCGGGGAGGAATAGGAATAGCAATAGGAATAGGAATATGAATCCCTCGTTGAAATCAAATCCATTTTAATAA_-_ATGGGCCAACGAAAGGGCTTTGAAGCAGGACGCGCCAGAAAATGGCTGCTTGCAGTGCTGTTACTGCTTCTGCTCGCAGTAGCAACAGCAATTTTCTGCACTTGCTTACGCTATTTGATTTCAGAGCAAAAACAGGATCGTGCAGCCCGCCATTGCATGAATGCCTGTAATCATGAATTAATGAAGAGGCCGAATCGAAATATTGATTTAAGCACAGGGGGTAGTGCGGGAGCGTCGGAGCTAATTCGTCCCCGCCGCGCGTTCAGATCGTACGAGGAATACATCGAGTTGCAGCTGAACAAAACGCTGAATCCGAGGCTCAGGAAGCTGTGGACCAGCCGGGACTGGAGAAGAAAGGTCGATGTGTTTTCTGGCATGTTCCGGGGTCTCATGAAGGGTCACTTACTGAGACCCAGGTCGAAGGCGCTGTGTATTGGAGCGAGGGTGGGGCAAGAAGTGGTTGCCCTCAAAGAAATAGGAGTGCCGGACGCCATTGGCATGGATTTGGTTCCATATCCTCCTCTGGTAATCCATGGGGATATGCACAGCCACCCCTTCCCCGACAATACCTTCGATTTTGAATTCTCGAACGTGTTCGACCATGCTCTCTACCCGTCCCTCTTCGTTTCGGAGATCGAACGGACTCTGAAACCCGGGGGAGTGGCCGTCCTCCATGTGGCCGTCCACAAACGGGGAGACAAATATTCTGCAAACGATCTGTACAGCGCTGATCCACTCATTGCTCTCTTCAAGAATTCAAGCCTTCTTCACATCAGACGGGTTGACGGATTCGGCCTCGACACAGAAATCGCTCTGCGCAAGTTCAATATTGATGCAACCGCTTCTTCAGTGGATTGA___ATTGTCTTACCGAGAGAATTTTGGGGTAATTTGAGGGAGTCAT

Fln Alignment:

sp_v1.1_unigene28971___IRPRRAFRSYEEYIELQLNKTLNPRLRKLWTSRDWRRKVDVFSGMFRGLMKGHLLRPRSKALCIGARVGQEVVALKEIGVPDAIGMDLVPYPPLVIHGDMHSHPFPDNTFDFEFSNVFDHALYPSLFVSEIERTLKPGGVAVLHVAVHKRGDKYSANDLYSADPLIALFKNSSLLHIRRVDGFGLDTEIALRK
F6GVK0_______________LRIRPGYTSYEAYLQLQLNKTLNPKLRKIWTTRDWDRKINVFAQFFQDLKQKQLLKNESKALCIGARVGQEVEALRRVGVADSVGIDLVPYPPLVLKGDFHNQPFKNDTFDFEFSNVFDHALYPDKFVGEIERTLRPGGVCVLHVALSRRSDKYSANDLYSVRPLTEMFGRSEVVHVRTVDGFGLDTEVVFRK

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
505			66	33	0.997453
506			33	66	0.997452
507	66		33		0.997452
508	66		33		0.997452
517		33		66	0.999998
549			33	66	0.997452
656	20		80		0.995493
677		60	40		1.0
719		20		80	0.995493
721	40		60		1.0
748	16		83		0.994512
825		16		83	0.994512
836		83		16	0.994512
839	14	85			0.993533
840			85	14	0.993533
841	85		14		0.993533
843		85	14		0.993533
866	14		85		0.993533
917		25		75	0.996474
964		14		85	0.993533
990	60		40		1.0
1068		20		80	0.995493
1077	80		20		0.995493
1136		80		20	0.995493
1148	83	16			0.994513
1149	83	16			0.994513
1150		16	83		0.994513
1151		16	83		0.994513
1152	16			83	0.994517

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain