SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28964

Length: 1972 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene28964
GAGAAAGACTTCGCCAGATGGAACCCCCAACGGAAAATGCATCCATGGTTGATTCATCTCTGACTGACTGCAAGCAGGAACCAGATGCATTTGAAGAGCAAGAAGCGTTAGAAGAGCCAGGAAGTGCAAACCATAGGAAATGTGGCAAACAGCCCCAGAGAATTAATCAATGGAGAGTTAAGCATTTATCTAATAACATAATGATCAATGGCGCTTCTTCAGAAGAGGGAAGCTTGCATTCAACAAGATACTTCATAATTAAGAGTCTGAGCCATCGTAATATACAAATGTCAATTGAAAAGGGAATTTGGGCAACTCAAGTGATGAACGAGCCCATTTTAGAGGAAGCTTTCCATAATTCAGAAAGGGTCATTCTAATTTTTAGTGTCAATATGAGTGGATACTTCCAAGGATATGCCCAAATGATGTCTCCTGTTGGTTGGAAGAGGGAAAATGTTTGGAATGAATCAAATAATGGAACAAATCCATGGGGACGCACTTTCAAGGTGAGGTGGCTTCGTCTTTACAATTTACCATTCCAGAAGACGGTCCATCTGAAGAACCCATTGAATGAGTACAAGCCAGTGAAGATTAGTAGAGATTGCCAGGAGCTGACGCAGGAAATTGGAGAAGCTCTTTGTGGTCTTATAGATGAAGGCGCTGAATTTGAAGGAAAACATAAGCGCAAGATGGCTGTGAGAGATTCTACCCTTACAAAAAGGCTCCATAGAGATTATGGTAGTGCTATGGTTGATGGAAATTCCATGGGAGGATATTCAACATCTCAGGGAAATTGGCCTATAATGCCTATGCTGTATCCATCTGCACAGCACCCGCCTGCCAATCCACTTGAACGGTACAATCCTTCTGGCGGGTTGCTGTCAAATATGACTTCTGGACATTTGGAAGAACCAAAAGCTTCTACCTCAAGGCCACCATTTGCAATGGAGAGGATAAATGATAGGCACAGAGAGAGAGAGAGGCCTTCAGGAACAGATGTAAATAAAGAGCGATCTCGAGCTGGTGGGAATTCAAGGCATGGGGTTGATTATCTACCTGAGGAAGATCTTCTACATATGACATATGAAGAATATCTTCAAAAGACATGTGGGAACATGAGCGAGTATAGTGGTTGCCCGCCGGTGAGAATATTGCAATGTCTTTCATTACTTCCATGTAGCTTGCATTCCTTGTTATCCATGATAATCATTACATGGATGGCATTCTCAATTCACATACCTTTCCTTGTCTGCAGACCCCCGGAGTATGGATGGGAAATGGTGTAGATCTTACGTTCCCAGATGATCAATATGCAAATTACTTGGCGAATTGGTATCAAAATCAGAATCCAATGATGGCGGGCAATATATACTATGGTGCTCCACAAATAATAAACACTTACCCTGCTATCCACCATCCTTAGCATATAAGATCACCCGTGATTGTATTTCTGCTTTTGCAGATGTTAACAGAGATTTTTCTTCTTTTTTTGTGGAGGCAGCAACAATTTTCTTGCTTTTCACACTCATAAAAATGTTGTAATCTATTAGTTCTTAGCATGGACGCCATTTCACTGGCATATATTTTATTGTTTTATTTTGTACATTGAAGAATTCTAATTTTTGCTTGGGACAGACGTTGATTTTGACTGTTCGTTTTGGCTGGGTGCTCTGAACTAATTTATTTCATGTGCTTTTGGCCAAGTTGTAAAATATATATTTTTTGTAATCCCATGTCCAATGAAGGGATTCTATATTGACCAATTTTTTGAGCAATCAGTATGTGAGGAAACATAAATCATTCTTTTGTGCTTTAGGGCACAGAGTTTTCCTGAGATCGATTTTATGCAGGCTTCTCAGGCTTCAATTGTATTCCTAAGAATACACTTTACTTTCGTCCAATGATGAAAATGCTATTTAATTTTCCTCTGGAGACAAGGTGAATGCAGTGGAATACACGACGGACATTCTGG

Ace file of the UniGene sp_v1.1_unigene28964

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	splicing factor yt521-B, putative	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	56%
Blast2go	protein	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	RNA processing	GO:0006396	Biological Process	63%
Blast2go	endonuclease activity	GO:0004519	Molecular Function	63%
Blast2go	RNA binding	GO:0003723	Molecular Function	63%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	63%
Blast2go	nucleus	GO:0005634	Cellular Component	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	YTH domain	IPR007275	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HUJ7

Fln msg: your sequence is longer than subject: 423 - 370

Fln protein: MEPPTENASMVDSSLTDCKQEPDAFEEQEALEEPGSANHRKCGKQPQRINQWRVKHLSNNIMINGASSEEGSLHSTRYFIIKSLSHRNIQMSIEKGIWATQVMNEPILEEAFHNSERVILIFSVNMSGYFQGYAQMMSPVGWKRENVWNESNNGTNPWGRTFKVRWLRLYNLPFQKTVHLKNPLNEYKPVKISRDCQELTQEIGEALCGLIDEGAEFEGKHKRKMAVRDSTLTKRLHRDYGSAMVDGNSMGGYSTSQGNWPIMPMLYPSAQHPPANPLERYNPSGGLLSNMTSGHLEEPKASTSRPPFAMERINDRHRERERPSGTDVNKERSRAGGNSRHGVDYLPEEDLLHMTYEEYLQKTCGNMSEYSGCPPVRILQCLSLLPCSLHSLLSMIIITWMAFSIHIPFLVCRPPEYGWEMV*

Protein Length: 424

Fln nts: GAGAAAGACTTCGCCAG_-_ATGGAACCCCCAACGGAAAATGCATCCATGGTTGATTCATCTCTGACTGACTGCAAGCAGGAACCAGATGCATTTGAAGAGCAAGAAGCGTTAGAAGAGCCAGGAAGTGCAAACCATAGGAAATGTGGCAAACAGCCCCAGAGAATTAATCAATGGAGAGTTAAGCATTTATCTAATAACATAATGATCAATGGCGCTTCTTCAGAAGAGGGAAGCTTGCATTCAACAAGATACTTCATAATTAAGAGTCTGAGCCATCGTAATATACAAATGTCAATTGAAAAGGGAATTTGGGCAACTCAAGTGATGAACGAGCCCATTTTAGAGGAAGCTTTCCATAATTCAGAAAGGGTCATTCTAATTTTTAGTGTCAATATGAGTGGATACTTCCAAGGATATGCCCAAATGATGTCTCCTGTTGGTTGGAAGAGGGAAAATGTTTGGAATGAATCAAATAATGGAACAAATCCATGGGGACGCACTTTCAAGGTGAGGTGGCTTCGTCTTTACAATTTACCATTCCAGAAGACGGTCCATCTGAAGAACCCATTGAATGAGTACAAGCCAGTGAAGATTAGTAGAGATTGCCAGGAGCTGACGCAGGAAATTGGAGAAGCTCTTTGTGGTCTTATAGATGAAGGCGCTGAATTTGAAGGAAAACATAAGCGCAAGATGGCTGTGAGAGATTCTACCCTTACAAAAAGGCTCCATAGAGATTATGGTAGTGCTATGGTTGATGGAAATTCCATGGGAGGATATTCAACATCTCAGGGAAATTGGCCTATAATGCCTATGCTGTATCCATCTGCACAGCACCCGCCTGCCAATCCACTTGAACGGTACAATCCTTCTGGCGGGTTGCTGTCAAATATGACTTCTGGACATTTGGAAGAACCAAAAGCTTCTACCTCAAGGCCACCATTTGCAATGGAGAGGATAAATGATAGGCACAGAGAGAGAGAGAGGCCTTCAGGAACAGATGTAAATAAAGAGCGATCTCGAGCTGGTGGGAATTCAAGGCATGGGGTTGATTATCTACCTGAGGAAGATCTTCTACATATGACATATGAAGAATATCTTCAAAAGACATGTGGGAACATGAGCGAGTATAGTGGTTGCCCGCCGGTGAGAATATTGCAATGTCTTTCATTACTTCCATGTAGCTTGCATTCCTTGTTATCCATGATAATCATTACATGGATGGCATTCTCAATTCACATACCTTTCCTTGTCTGCAGACCCCCGGAGTATGGATGGGAAATGGTGTAG___ATCTTACGTTCCCAGATGATCAATATGCAAATTACTTGGCGAATTGGTATCAAAATCAGAATCCAATGATGGCGGGCAATATATACTATGGTGCTCCACAAATAATAAACACTTACCCTGCTATCCACCATCCTTAGCATATAAGATCACCCGTGATTGTATTTCTGCTTTTGCAGATGTTAACAGAGATTTTTCTTCTTTTTTTGTGGAGGCAGCAACAATTTTCTTGCTTTTCACACTCATAAAAATGTTGTAATCTATTAGTTCTTAGCATGGACGCCATTTCACTGGCATATATTTTATTGTTTTATTTTGTACATTGAAGAATTCTAATTTTTGCTTGGGACAGACGTTGATTTTGACTGTTCGTTTTGGCTGGGTGCTCTGAACTAATTTATTTCATGTGCTTTTGGCCAAGTTGTAAAATATATATTTTTTGTAATCCCATGTCCAATGAAGGGATTCTATATTGACCAATTTTTTGAGCAATCAGTATGTGAGGAAACATAAATCATTCTTTTGTGCTTTAGGGCACAGAGTTTTCCTGAGATCGATTTTATGCAGGCTTCTCAGGCTTCAATTGTATTCCTAAGAATACACTTTACTTTCGTCCAATGATGAAAATGCTATTTAATTTTCCTCTGGAGACAAGGTGAATGCAGTGGAATACACGACGGACATTCTGG

Fln Alignment:

sp_v1.1_unigene28964___ENASMVDSSLTDCKQEPDAFEEQEALEEPGSANHRKCGKQPQRINQWRVKHLSNNIMINGASSEEGSLHSTRYFIIKSLSHRNIQMSIEKGIWATQVMNEPILEEAFHNSERVILIFSVNMSGYFQGYAQMMSPVGWKRENVWNESNNGTNPWGRTFKVRWLRLYNLPFQKTVHLKNPLNEYKPVKISRDCQELTQEIGEALCGLIDEGAEFEGKHKRKMAVRDSTLTKRLHRDYGSAMVDGNSMGGYSTSQGNWPIMPMLYPS
F6HUJ7_______________ENASVVDSSVTDWKHDMGNFDDPESSSYKANEDGYPSGPEEQRH--------SHTGMLNSSANKKGKLYSTRYFIIKSLNHHNIQLSMEKGIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQGSGGNNPWGRSFKVKWLRLHDLPFQKTLHLKNPLNDYKPVKISRDCQELSQEIGEALCELLD-GKTDVGDNLRKNDFSGDDLPPRRPFMEPSCSLPGEE---YNLSSMHMTWTSMLYPS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
1465	33			66	0.997452
1565	75	25			0.996473
1566			25	75	0.996473
1570	25			75	0.996473
1571		25		75	0.996473
1575	75		25		0.996473
1581		25	75		0.996473
1584			75	25	0.996473
1586	25	75			0.996473
1698	87	12			0.992554
1699			12	87	0.992554
1701		12		87	0.992554
1702	87		12		0.992554
1704			12	87	0.992554
1705	12			87	0.992554
1707	87	12			0.992554
1709			87	12	0.992554
1710			12	87	0.992554
1715			12	87	0.992554
1717		12		87	0.992554
1718	12		87		0.992554
1719		12	87		0.992554
1720		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain