SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28963

Length: 2776 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene28963
ATGGGGGGTCTTAGCGCTGCCTTGATCGAATCATGCTTTATACATATCGTCGTGACCTTGGCTGTCACTCAGTTTGTGAATTCGGCCGCTGCTATTGGGGTTTGGCCGCGTGATAGCCACTCTTTTTCTCATTTGGCCGTTAAAGTTCAATCTCTTCTCCGTCATATTGTGCTTCACCAGAGCCAAAGGTGTAAGCTTGCATTCGTTTGCTTCTTTCAGTACACTACTTACAGTTGATTATATCGGACATGGGAAAGAAGAAAGGAGGTGACGACATGGGGTCAGGGGCACCTGCTACCAAATCAAAATCCAAAGAAAGCAAGGAACCCAAGAAGATGTCAGTATCTCAGATGTTGGCCAGCATGGACAACAAACCTGAAAAGCCCAAATCTGCAGCAGGTTCCAAACCCAAACCCAAGGCCGCAGTTGGCAAATCCAGTTATATTGATGGTCTTGACCTACCCCCTTCCGATGAGGACGAAGACTCTGAAACCGACGAGGCCGCCAAGGCTAGTAGAGGTAGTGATTTCAAAGATAGTAAGCTTGAAGTTTCTGTTACTGGTAAGGAATTGAAGAAGCGTGAAAAGAAGGATCAATTAGCTGCCCATGCTGTGGAGATTGCGAGGCATGAGGCAATGAAAGATGACAGGGATGCATTCACTGTTGTTATAGGTAGCCGAAGCGCCGTTCTTGATGGAGATGATACAGCCGATGCCAATGTCAAAGACATTAAAATTGATTCCTTTTCCGTTGCGGCCCGAGGTAAGGAGCTTCTGAAGAATGCCTCTGTGAAAATTTCTCATTGTATCGACCTTGGCTGTCACTCAAAATGGTAAGGGGAAGTCTACTTTGTTGAAACTTTTAGCATGGAGAAAGATACCTGTACCCAAAAACATTGATGTTTTGTTAGTCGAACAGGAGGTTGTGGGCGATGATAGAACTGCATTAGAAGCTGTTGTCGCAGCAAATGAGGAATTAGTGAAATTCCGACAAGAGGCTCAACGTTTGCAAGATCTGTCTCTGGAAGATGGAGCGGATGACGAGATAGACAATGGTGAAAAGCTTGCTGAGGTTTATGACAAATTGCAAGAGATTGGATCCGATGCAGCAGAGGCACAGGCCTCGAAGATCTTGGCTGGTTTGGGGTTCACGAAATCTATGCAGGTCCGCCCCACAAAATCTTTCAGTGGAGGTTGGCGTATGAGGATTTCCTTGGCAAGAGCTTTGTTTGTTCAGCCGACCCTTCTGTTATTGGATGAACCCACTAACCATCTGGATCTCAGAGCTGTTCTATGGCTAGAAGAATATTTGGGTAGGTGGAAGAAAACACTTGTTGTTGTGTCGCATGATCGTGACTTCTTGAACTCTGTTTGCACTGATATCATTCATCTCCACGATGAGAAACTTCACTTCTACAGAGGTAATTTTGATGCTTTTGAGAGTGGATATGAGCAGAAACGCAAGGAGTCCAACAAGAAGTTTGAGGTATATGAGAAGCAGCTAAAAGCTGCTAAACGTAGTGGAAATAGGGCTCAGCAGGAGAAAGTCAAGGACCGGGCAAAGTTTAATGCAAGTAAAGAGACAGCAAAGAGCAAAGGGAAGGGAAAGACGGTAGATGATGATGAAGAGCCTGTAGAAGCACCAAAAAGATGGAGAGATTATAGTGTGGAGTTTCACTTTCCAGAACCAACAGAACTCACACCACCTCTTCTTCAGCTCATTGAAGTCAGTTTCAGTTACCCTAGTAGAGACGATTTCCGACTTAGTAATGTTGATGTGGGTATTGACATGGGAACACGAGTTGCAATTATTGGGCCCAATGGAGCAGGAAAGTCTACTTTACTTAATCTTCTTGCTGGTGATTTGAAACCTTCAGAGGGAGAGGTAAGGAGGAGTCAGAAACTGAGAATTGGTAGGTATTCTCAACACTTTGTTGACTTGTTAACCATGGAGGAAACACCTGTTAGCTATCTTCTTAGGTTACATCCAGAACAAGAAGGTTTTAGTAAGCAGGAGGCTGTACGTGCAAAACTTGGAAAGTTTGGACTTCCCAGCCATAATCATCTCACTCCAATTGCAAAACTATCAGGAGGTCAGAAGGCACGTGTTGTTTTCACATCAATTTCAATGTCGAAGCCCCATATTCTTTTGTTGGATGAACCTACAAATCACTTAGACATGCAAAGTATTGATGCTTTGGGAGATGCATTAGAAGAGTTTACTGGTGGAGTTGTGCTTGTCAGTCATGATTCTAGGCTTATATCTCGAGTATGTGATGATGAAGAAAGAAGTGAAACTTGGGTCGTCGAAGATGGAACAGTTAGAAAATTCCCAGGCACTTTTGAAGAATACAAGGAAGAGCTTCAGAAGCAAATCAAAGCAGAGGTTGATGAATGATATCTAAACAAAAGGAATGGTGTAGTTGTGACAAATGATCCCTCAATCTTTGGTGGTAGTGTGTTCCTCCTTTTAATGCATATTTAAGACATTTTTGATAATGGATTAGCTTGCTTCACTATGGCATGGCATTGTAATTTCAGGTGTGTTCACTACAATGCTCATGAAGCGTAGTTTCAACTTTTAATTGTTTTATTCACTATATAACATCAACAAATAAATATGTGAAACAAAAGTATGAATTAGATGTGAAAGCATGCCATGTTTATTTATTTTATTTGGAAGGGAATGTTGCCAACAGGCATATAGCAGATAGATTTTGGAGTGATTTCAAATAGTTTGGTACCATATGGGATTCGGCTCAGCAATTGTAACATTA

Ace file of the UniGene sp_v1.1_unigene28963

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent transporter, putative n=1 Tax=Ricinus communis RepID=B9RUV8_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	abc transporter family protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	89%
Blast2go	Thiamine metabolism	00730	89%
Blast2go	Metabolic pathways	01100	89%

Source	GOs	Term	Type	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	89%
Blast2go	binding	GO:0005488	Molecular Function	89%
Blast2go	transporter activity	GO:0005215	Molecular Function	89%
Blast2go	cell part	GO:0044464	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter-like	IPR003439	-	0.0	89%
Blast2go	AAA+ ATPase domain	IPR003593	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPV8

Fln msg: Separated hits, possible frame ERROR between 803 and 820,

Fln protein: MGKKKGGDDMGSGAPATKSKSKESKEPKKMSVSQMLASMDNKPEKPKSAAGSKPKPKAAVGKSSYIDGLDLPPSDEDEDSETDEAAKASRGSDFKDSKLEVSVTGKELKKREKKDQLAAHAVEIARHEAMKDDRDAFTVVIGSRSAVLDGDDTADANVKDIKIDSFSVAARGKELLKNASVKISxxxxxxxVTQNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRTALEAVVAANEELVKFRQEAQRLQDLSLEDGADDEIDNGEKLAEVYDKLQEIGSDAAEAQASKILAGLGFTKSMQVRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLGRWKKTLVVVSHDRDFLNSVCTDIIHLHDEKLHFYRGNFDAFESGYEQKRKESNKKFEVYEKQLKAAKRSGNRAQQEKVKDRAKFNASKETAKSKGKGKTVDDDEEPVEAPKRWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPSRDDFRLSNVDVGIDMGTRVAIIGPNGAGKSTLLNLLAGDLKPSEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPEQEGFSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALGDALEEFTGGVVLVSHDSRLISRVCDDEERSETWVVEDGTVRKFPGTFEEYKEELQKQIKAEVDE*

Protein Length: 718

Fln nts: ATGGGGGGTCTTAGCGCTGCCTTGATCGAATCATGCTTTATACATATCGTCGTGACCTTGGCTGTCACTCAGTTTGTGAATTCGGCCGCTGCTATTGGGGTTTGGCCGCGTGATAGCCACTCTTTTTCTCATTTGGCCGTTAAAGTTCAATCTCTTCTCCGTCATATTGTGCTTCACCAGAGCCAAAGGTGTAAGCTTGCATTCGTTTGCTTCTTTCAGTACACTACTTACAGTTGATTATATCGGAC_-_ATGGGAAAGAAGAAAGGAGGTGACGACATGGGGTCAGGGGCACCTGCTACCAAATCAAAATCCAAAGAAAGCAAGGAACCCAAGAAGATGTCAGTATCTCAGATGTTGGCCAGCATGGACAACAAACCTGAAAAGCCCAAATCTGCAGCAGGTTCCAAACCCAAACCCAAGGCCGCAGTTGGCAAATCCAGTTATATTGATGGTCTTGACCTACCCCCTTCCGATGAGGACGAAGACTCTGAAACCGACGAGGCCGCCAAGGCTAGTAGAGGTAGTGATTTCAAAGATAGTAAGCTTGAAGTTTCTGTTACTGGTAAGGAATTGAAGAAGCGTGAAAAGAAGGATCAATTAGCTGCCCATGCTGTGGAGATTGCGAGGCATGAGGCAATGAAAGATGACAGGGATGCATTCACTGTTGTTATAGGTAGCCGAAGCGCCGTTCTTGATGGAGATGATACAGCCGATGCCAATGTCAAAGACATTAAAATTGATTCCTTTTCCGTTGCGGCCCGAGGTAAGGAGCTTCTGAAGAATGCCTCTGTGAAAATTTCTCAxxxxxxxxxxxxxxxxxxTGTCACTCAAAATGGTAAGGGGAAGTCTACTTTGTTGAAACTTTTAGCATGGAGAAAGATACCTGTACCCAAAAACATTGATGTTTTGTTAGTCGAACAGGAGGTTGTGGGCGATGATAGAACTGCATTAGAAGCTGTTGTCGCAGCAAATGAGGAATTAGTGAAATTCCGACAAGAGGCTCAACGTTTGCAAGATCTGTCTCTGGAAGATGGAGCGGATGACGAGATAGACAATGGTGAAAAGCTTGCTGAGGTTTATGACAAATTGCAAGAGATTGGATCCGATGCAGCAGAGGCACAGGCCTCGAAGATCTTGGCTGGTTTGGGGTTCACGAAATCTATGCAGGTCCGCCCCACAAAATCTTTCAGTGGAGGTTGGCGTATGAGGATTTCCTTGGCAAGAGCTTTGTTTGTTCAGCCGACCCTTCTGTTATTGGATGAACCCACTAACCATCTGGATCTCAGAGCTGTTCTATGGCTAGAAGAATATTTGGGTAGGTGGAAGAAAACACTTGTTGTTGTGTCGCATGATCGTGACTTCTTGAACTCTGTTTGCACTGATATCATTCATCTCCACGATGAGAAACTTCACTTCTACAGAGGTAATTTTGATGCTTTTGAGAGTGGATATGAGCAGAAACGCAAGGAGTCCAACAAGAAGTTTGAGGTATATGAGAAGCAGCTAAAAGCTGCTAAACGTAGTGGAAATAGGGCTCAGCAGGAGAAAGTCAAGGACCGGGCAAAGTTTAATGCAAGTAAAGAGACAGCAAAGAGCAAAGGGAAGGGAAAGACGGTAGATGATGATGAAGAGCCTGTAGAAGCACCAAAAAGATGGAGAGATTATAGTGTGGAGTTTCACTTTCCAGAACCAACAGAACTCACACCACCTCTTCTTCAGCTCATTGAAGTCAGTTTCAGTTACCCTAGTAGAGACGATTTCCGACTTAGTAATGTTGATGTGGGTATTGACATGGGAACACGAGTTGCAATTATTGGGCCCAATGGAGCAGGAAAGTCTACTTTACTTAATCTTCTTGCTGGTGATTTGAAACCTTCAGAGGGAGAGGTAAGGAGGAGTCAGAAACTGAGAATTGGTAGGTATTCTCAACACTTTGTTGACTTGTTAACCATGGAGGAAACACCTGTTAGCTATCTTCTTAGGTTACATCCAGAACAAGAAGGTTTTAGTAAGCAGGAGGCTGTACGTGCAAAACTTGGAAAGTTTGGACTTCCCAGCCATAATCATCTCACTCCAATTGCAAAACTATCAGGAGGTCAGAAGGCACGTGTTGTTTTCACATCAATTTCAATGTCGAAGCCCCATATTCTTTTGTTGGATGAACCTACAAATCACTTAGACATGCAAAGTATTGATGCTTTGGGAGATGCATTAGAAGAGTTTACTGGTGGAGTTGTGCTTGTCAGTCATGATTCTAGGCTTATATCTCGAGTATGTGATGATGAAGAAAGAAGTGAAACTTGGGTCGTCGAAGATGGAACAGTTAGAAAATTCCCAGGCACTTTTGAAGAATACAAGGAAGAGCTTCAGAAGCAAATCAAAGCAGAGGTTGATGAATGA___TATCTAAACAAAAGGAATGGTGTAGTTGTGACAAATGATCCCTCAATCTTTGGTGGTAGTGTGTTCCTCCTTTTAATGCATATTTAAGACATTTTTGATAATGGATTAGCTTGCTTCACTATGGCATGGCATTGTAATTTCAGGTGTGTTCACTACAATGCTCATGAAGCGTAGTTTCAACTTTTAATTGTTTTATTCACTATATAACATCAACAAATAAATATGTGAAACAAAAGTATGAATTAGATGTGAAAGCATGCCATGTTTATTTATTTTATTTGGAAGGGAATGTTGCCAACAGGCATATAGCAGATAGATTTTGGAGTGATTTCAAATAGTTTGGTACCATATGGGATTCGGCTCAGCAATTGTAACATTA

Fln Alignment:

sp_v1.1_unigene28963___APATXXXXXXXXXXXXXXXXQMLASMDNXXXXXXXXXXXXXXXXXXXXXXXYIDGLDLPPXXXXXXXXXXXXXXXXRGSDFKDSKL-EVSVTGKELKKREKKDQLAAHAVEIARHEAMKDDRDAFTVVIGSRSAVLDGDDTADANVKDIKIDSFSVAARGKELLKNASVKISHxxxxxxVTQNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRTXXXXXXXXXXXXXKFRQEAQRLQDLSLEDGADDEIDNGEKLAEVYDKLQEIGSDAAEAQASKILAGLGFTKSMQVRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLGRWKKTLVVVSHDRDFLNSVCTDIIHLHDEKLHFYRGNFDAFESGYEQKRKESNKKFEVYEKQLKAAKRSGNRAQQEKVKDRAKFNASKETAKSKGKGKTVDDDEEPVEAPKRWRDYSVEFHFXXXXXXXXXXXXXIEVSFSYPSRDDFRLSNVDVGIDMGTRVAIIGPNGAGKSTLLNLLAGDLKPSEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPEQEGFSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALGDALEEFTGGVVLVSHDSRLISRVCDDEERSETWVVEDGTVRKFPGTFEEYKEELQKQIKAEVDE
B8LPV8_______________APSTKSKSKESKEPKKMSVSQMLASMDHKPEKPKSAAGSKSKPKAPVGKSNYIDGLDLPPSDEEEESESEEAAKASRGSDMKDSKLLEASVTGKELKKREKKDQLAAHAVEIARHEALKDDRDAFTVVIGSRSAVLDGDDTADANVKDIKVDSFSVSARGKELLKNASVKISHxxxxxxVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRTALAAVVSANEELVKLRQEAQRLQDLSLEDGVDDEMESGEKLAEVYEKLQEIGSDAAEAQASKILAGLGFTKSMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLGRWKKTLVVVSHDRDFLNSVCTDIIHLHDEKLHFYRGNFDAFESGYEQKRKETNKKFEVYEKQLKAAKRSGSRAQQEKVKDRAKFAANKETAKSKGKGKTVDDDEEPVEAPKRWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPGREDFRLSNVDVGIDMGTRVAIIGPNGAGKSTLLNLLAGDLQPSEGEVRRSQKLRIGRYSQHFVDLLTMEETPVQYLLRLHPEQEGFSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALGDALEEFTGGVVLVSHDSRLISRVCEDEEKSETWVVEDGAVRKFPGTFEEYKEELQKEIKAEVDE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1881		85		14	0.993533
2022	90	10			0.90298
2023	10		90		0.90298
2437			27	72	1.0
2631		28		71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain