SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28957

Length: 2143 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene28957
ATGGGGTCGCGATTGCGTTCCTTGCTTTATTCTCACGCCAACCCAACCCCACCAAAGCATACGTGTATGTGTCGTAGCCTGCGCCCACTTACCGCCCATTAGGGTTTTGCAAGCTTCTCATCGCGACTGGGACGAAGCTAGTTTGTCGGAACTCAGAGCATCAAAATCCAGCTCCCTGACGTCCCCTGAAGCTTATAGAACAGCGTATCATTTTCAGCCCGTTAAACATTGGATGAATGATCCCAATGCGCCATTATTCTATAAGGGCTACTATCATTTGTTCTACCAATATAATCCCAAGTCGGCTGTGTGGGGACTCATCATGTGGGGGCATGCAGTTTCAAGAGATCTCATAAATTGGGTACACTTGGCTGGTGCAGCTATATACCCTGATGAATGGTATGATGTCAATGGCGCCTGGTCTGGATCTGCCACTTTACTACACAAAGGGGGCGTTCCCGTGATCTTATACACAGGATGCAACAATGTGTCGGAACAGGTTCAAGCCATGGCTGTTCCCAAGAACCCATCGGATCCTTTGTTGCGGGAGTGGAAGAAGATCCCGAAGAATCCAATCATGGTGCCTACTGGCATCAACACCAGTTCCTTCAGAGATCCAACGACGGCATGGCTGGGATCGGACCAAAGATGGCGACTTCTGGTCGGCAGCAAAAGGGATAAGAATAAGGTGGGAGTGGCATTGATCTTCAGAAGCAAAGATTTCGTCAGATGGGTGAAAGCCAAACATCCGCTGCACTCTGCTAGGCATATCGGAATGTGGGAGTGCCCGGACTTCTACCCTGTGTCCCTCTATGGTACCCATGGCCTTGACACTTCAACCACGGGTTCCGCTGTGAAGCACGTTCTCAAGAACAGTTTAGACGATACCAAAGTGGACTACTATACAGTGGGCCATTACTTGCCTCATTTGGACAAGTATGTCCCCGAAAATGGATCTGTGGAGGGCCCCAATGGCCTTAGGTATGACTACGGTAAGTTTTATGCTTCAAAAACTTTTTTTGACAATAATAAGTCGCGAAGGATTTTGTGGGGTTGGATCAATGAATCCGACAGCGTGGCGGATGATCTCAACAAAGGATGGGCTTCCCTTCAGGCGATTCCTAGGGTTGTGAGGCTTGATCCTCTTACCAGGAGAAGTCTCTTTCAGTGGCCAGTGCCAGAGCTTGAATCGTTGCGCGCGTATAATGTGAGGAAAGACCACGTGGTTTTGGAAAGAGGATCGGTAATGAAGGTGGAGGGATTCAACTCAGGAGCTGCGCAGGTGGACGTGGAGGTAGAGTTTGAGTTGGGAGGCGATTACGAAACAGTGGAGGAGTTGGAGGGAATGACAGCGACAGCTCAGAGCTTGTGCAGTCGCGGGAACAACAATACGAGGGGATTTGGGTTGATGGTGTTGGCATCTGATGATCTCGAAGAGAGGAGCGCTGTGTTCTTCAAAATTTTCAAGGGCAGAGTTAACGGCAATGTGCACAGAAAGGTGGCCTTGTGCGTGGATCAGAGCAGGTCCACGCTGCAAGTGGATGTGGATAAGACGAGCTATGGAGGATTTGTGAGCGTGAAGCCCCACCAACGGTCGCTGTCGCTTAGAGTATTGGTTGATCACTCAATCGTGGAGAGTTTTGCAGAGGGAGGGAGAACATGCATTACGTCGAGGAGTTATCCGATGATGGCGGTTAATGAGAAAGCTCATCTCTTCGTGTTTAATTATAACAAATCGCCCCTCGTCCTTCGTCGACTCTCCGCCTGGCATATGAAAACCGCCATCCAGCTATACGAATCGCAGTGAATTATGATGCGGATGGCTGTCCATCGAGACTTGGTGTTTCCCGTTGAAATAAATCGCAGTGTAGCCTTTTGGCTTGTGATTGTGCGATCACAATTCTCTTAAATTATTGAAGTATGTTTCATTAGAATATGAAAAAAATGGTTAGTAGAGTTAGAAATATAAACGAGGTTTTGTTTTCCAAGTTATCTATAACAATAATGTAAATATGTGCCTCCTCCTAAGCTGCTATATGTGTTTAATCTTTCTCAGGCTTACATGCGGGCTTACATGCCGTCTGATTTTGTATGTTAGTATCTAAACACATTGTGTAATATATGGTTTTATGGACTCTCATGT

Ace file of the UniGene sp_v1.1_unigene28957

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cell wall invertase n=1 Tax=Fragaria x ananassa RepID=Q9ZP42_FRAAN	-	-	56%
FL-Next	sp=Beta-fructofuranosidase, insoluble isoenzyme CWINV1; Arabidopsis thaliana (Mouse-ear cress).	-	-	53%
Blast2go	achain crystal structure of a cell-wall invertase from arabidopsis thaliana in complex with sucrose	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	68%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	68%
Blast2go	Starch and sucrose metabolism	00500	68%
Blast2go	Metabolic pathways	01100	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	0.0	68%
Blast2go	beta-fructofuranosidase activity	GO:0004564	Molecular Function	0.0	68%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 32	IPR001362	-	68%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	68%
Blast2go	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	68%
Blast2go	Glycosyl hydrolase family 32, C-terminal	IPR013189	-	68%
Blast2go	Glycoside hydrolase, family 32, active site	IPR018053	-	68%
Blast2go	Glycosyl hydrolase family 43, five-bladed beta-propellor domain	IPR023296	-	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q43866

Fln msg: W2: There is no M at the beginning,

Fln protein: WGRDCVPCFILTPTQPHQSIRVCVVACAHLPPIRVLQASHRDWDEASLSELRASKSSSLTSPEAYRTAYHFQPVKHWMNDPNAPLFYKGYYHLFYQYNPKSAVWGLIMWGHAVSRDLINWVHLAGAAIYPDEWYDVNGAWSGSATLLHKGGVPVILYTGCNNVSEQVQAMAVPKNPSDPLLREWKKIPKNPIMVPTGINTSSFRDPTTAWLGSDQRWRLLVGSKRDKNKVGVALIFRSKDFVRWVKAKHPLHSARHIGMWECPDFYPVSLYGTHGLDTSTTGSAVKHVLKNSLDDTKVDYYTVGHYLPHLDKYVPENGSVEGPNGLRYDYGKFYASKTFFDNNKSRRILWGWINESDSVADDLNKGWASLQAIPRVVRLDPLTRRSLFQWPVPELESLRAYNVRKDHVVLERGSVMKVEGFNSGAAQVDVEVEFELGGDYETVEELEGMTATAQSLCSRGNNNTRGFGLMVLASDDLEERSAVFFKIFKGRVNGNVHRKVALCVDQSRSTLQVDVDKTSYGGFVSVKPHQRSLSLRVLVDHSIVESFAEGGRTCITSRSYPMMAVNEKAHLFVFNYNKSPLVLRRLSAWHMKTAIQLYESQ*

Protein Length: 603

Fln nts: _-_ATGGGGTCGCGATTGCGTTCCTTGCTTTATTCTCACGCCAACCCAACCCCACCAAAGCATACGTGTATGTGTCGTAGCCTGCGCCCACTTACCGCCCATTAGGGTTTTGCAAGCTTCTCATCGCGACTGGGACGAAGCTAGTTTGTCGGAACTCAGAGCATCAAAATCCAGCTCCCTGACGTCCCCTGAAGCTTATAGAACAGCGTATCATTTTCAGCCCGTTAAACATTGGATGAATGATCCCAATGCGCCATTATTCTATAAGGGCTACTATCATTTGTTCTACCAATATAATCCCAAGTCGGCTGTGTGGGGACTCATCATGTGGGGGCATGCAGTTTCAAGAGATCTCATAAATTGGGTACACTTGGCTGGTGCAGCTATATACCCTGATGAATGGTATGATGTCAATGGCGCCTGGTCTGGATCTGCCACTTTACTACACAAAGGGGGCGTTCCCGTGATCTTATACACAGGATGCAACAATGTGTCGGAACAGGTTCAAGCCATGGCTGTTCCCAAGAACCCATCGGATCCTTTGTTGCGGGAGTGGAAGAAGATCCCGAAGAATCCAATCATGGTGCCTACTGGCATCAACACCAGTTCCTTCAGAGATCCAACGACGGCATGGCTGGGATCGGACCAAAGATGGCGACTTCTGGTCGGCAGCAAAAGGGATAAGAATAAGGTGGGAGTGGCATTGATCTTCAGAAGCAAAGATTTCGTCAGATGGGTGAAAGCCAAACATCCGCTGCACTCTGCTAGGCATATCGGAATGTGGGAGTGCCCGGACTTCTACCCTGTGTCCCTCTATGGTACCCATGGCCTTGACACTTCAACCACGGGTTCCGCTGTGAAGCACGTTCTCAAGAACAGTTTAGACGATACCAAAGTGGACTACTATACAGTGGGCCATTACTTGCCTCATTTGGACAAGTATGTCCCCGAAAATGGATCTGTGGAGGGCCCCAATGGCCTTAGGTATGACTACGGTAAGTTTTATGCTTCAAAAACTTTTTTTGACAATAATAAGTCGCGAAGGATTTTGTGGGGTTGGATCAATGAATCCGACAGCGTGGCGGATGATCTCAACAAAGGATGGGCTTCCCTTCAGGCGATTCCTAGGGTTGTGAGGCTTGATCCTCTTACCAGGAGAAGTCTCTTTCAGTGGCCAGTGCCAGAGCTTGAATCGTTGCGCGCGTATAATGTGAGGAAAGACCACGTGGTTTTGGAAAGAGGATCGGTAATGAAGGTGGAGGGATTCAACTCAGGAGCTGCGCAGGTGGACGTGGAGGTAGAGTTTGAGTTGGGAGGCGATTACGAAACAGTGGAGGAGTTGGAGGGAATGACAGCGACAGCTCAGAGCTTGTGCAGTCGCGGGAACAACAATACGAGGGGATTTGGGTTGATGGTGTTGGCATCTGATGATCTCGAAGAGAGGAGCGCTGTGTTCTTCAAAATTTTCAAGGGCAGAGTTAACGGCAATGTGCACAGAAAGGTGGCCTTGTGCGTGGATCAGAGCAGGTCCACGCTGCAAGTGGATGTGGATAAGACGAGCTATGGAGGATTTGTGAGCGTGAAGCCCCACCAACGGTCGCTGTCGCTTAGAGTATTGGTTGATCACTCAATCGTGGAGAGTTTTGCAGAGGGAGGGAGAACATGCATTACGTCGAGGAGTTATCCGATGATGGCGGTTAATGAGAAAGCTCATCTCTTCGTGTTTAATTATAACAAATCGCCCCTCGTCCTTCGTCGACTCTCCGCCTGGCATATGAAAACCGCCATCCAGCTATACGAATCGCAGTGAATTATGATGCGGATGGCTGTCCATCGAGACTTGGTGTTTCCCGTTGAAATAAATCGCAGTGTAGCCTTTTGGCTTGTGATTGTGCGATCACAATTCTCTTAAATTATTGAAGTATGTTTCATTAGAATATGAAAAAAATGGTTAGTAGAGTTAGAAATATAAACGAGGTTTTGTTTTCCAAGTTATCTATAACAATAATGTAAATATGTGCCTCCTCCTAAGCTGCTATATGTGTTTAATCTTTCTCAGGCTTACATGCGGGCTTACATGCCGTCTGATTTTGTATGTTAGTATCTAAACACATTGTGTAATATATGGTTTTATGGACTCTCATGT

Fln Alignment:

sp_v1.1_unigene28957___EAYRTAYHFQPVKHWMNDPNAPLFYKGYYHLFYQYNPKSAVWGLIMWGHAVSRDLINWVHLAGAAIYPDEWYDVNGAWSGSATLLHKGGVPVILYTGCNNVSEQVQAMAVPKNPSDPLLREWKKIPKNPIMVP---TGINTSSFRDPTTAWLGSDQRWRLLVGSKRDKNKVGVALIFRSKDFVRWVKAKHPLHSARHIGMWECPDFYPVSLYGTHGLDTSTTGSA---VKHVLKNSLDDTKVDYYTVGHYLPHLDKYVPENGSVEGPNGLRYDYGKFYASKTFFDNNKSRRILWGWINESDSVADDLNKGWASLQAIPRVVRLDPLTRRSLFQWPVPELESLRAYNVRK-DHVVLERGSVMKVEGFNSGAAQVDVEVEFELGGDYETVEELEGMTATAQSLCSRGNNNTRG----FGLMVLASDDLEERSAVFFKIFKGRVNGNVHRKVALCVDQSRSTLQVDVDKTSYGGFVSVKPHQRSLSLRVLVDHSIVESFAEGGRTCITSRSYPMMAVNEKAHLFVFNYNKSPLVLRRLSAWHMKTA
Q43866_______________QPYRTGFHFQPPKNWMNDPNGPMIYKGIYHLFYQWNPKGAVWGNIVWAHSTSTDLINW-DPHPPAIFPSAPFDINGCWSGSATIL-PNGKPVILYTGIDPKNQQVQNIAEPKNLSDPYLREWKKSPLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVIIGSKIHRR--GLAITYTSKDFLKWEKSPEPLHYDDGSGMWECPDFFPVTRFGSNGVETSSFGEPNEILKHVLKISLDDTKHDYYTIGTYDRVKDKFVPDNGFKMDGTAPRYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDVEKGWSGIQTIPRKIWLD-RSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVT--AAQADVEVLFKV-RDLEKADVIEPSWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKARQNSNKY-VVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQ-PLSLRALIDHSVVESFGGKGRACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLNLNAWSMNSA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
798		90		10	0.90298
821			10	90	0.90298
836		88		11	0.991528
1073	11		88		0.991528
1776		95	4		0.99692
1955	88			11	0.923564
2081		16		83	0.994512
2096		80	20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain