SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28956

Length: 1863 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28956

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cyclin-dependent protein kinase, putative	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	Cyclin P/U	IPR012389	-	77%
Blast2go	Cyclin-like	IPR013763	-	77%
Blast2go	Cyclin PHO80-like	IPR013922	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP68

Fln msg:

Fln protein: MDSSVHMVEEGSNADLYSALDLSESEVGFCESPRVLPILASLLDRVVQRNEKLLEATKKQEKITVFHGLRAPNLSIRSYIDRIFKYSNCSPSCFTLAYVYIDRFIHQQPEVPITSLNVHRLLITSVMVAAKFVDDAFFNNAYYAKVGGVSTLEMNRLELEFLFNLDFKLQVTVSTFESYCLKLEKEVAVGGGYQIERPLQFVCGRNGLNNKEETKGQSVVPRFTYGAV*

Protein Length: 230

Fln nts: ATCTAGGTGCCCCTCTTCTGCTGTTGCAtcgGgATTTGTCGTCCTTTTAATAATCTCTAAATCAGATGCTtcgGTGCTTGAATAGATTTGTTAAAAATTCTCGTTGCCTGTGTAGGTTTGATTTGATTTTACTGGGTATTGAAAAGCACGCTGAGATTGTTTGGCTGGGTGACTTGTGAGTGCAGTCAGAATTTGTGGCGGGAGACTTGGAAGTGCAATGGCCCTCTGGACTCCCGTTTCACATGGCCGGTGGTGGGTTTGGAGGAAGTGAAGTGAAGTGGTGTGTTTCGAGTAGAAGTGAAGTGGATACCCGCCTAATTGCTTCCACCGGGCTAGAATGCTTGGATAAGGTCTGGTGGTAGTTACTGGTTGCTTTTATTACAAGTGCCTGAAAAGTATCAGGGTTCTTGAACGTGCATATTATTTAC_-_ATGGATTCTTCAGTTCACATGGTTGAGGAAGGTTCCAATGCAGATTTGTATTCAGCACTGGACCTGAGTGAGTCTGAAGTAGGATTCTGTGAAAGTCCCCGTGTGTTGCCTATTTTGGCCTCTCTTCTAGATAGAGTTGTACAAAGAAATGAAAAGTTACTAGAGGCTACGAAGAAGCAAGAAAAAATAACAGTTTTTCATGGCCTCCGAGCACCCAACTTAAGCATTCGAAGTTACATTGATAGAATTTTCAAGTACTCAAACTGCAGCCCATCATGCTTTACTCTTGCTTATGTGTACATTGATAGATTCATCCATCAACAACCAGAGGTTCCTATCACCTCCTTGAATGTTCATCGTCTTTTGATCACAAGTGTAATGGTTGCAGCAAAGTTTGTTGATGATGCATTCTTTAACAATGCTTATTATGCAAAAGTTGGGGGTGTCAGCACGTTGGAGATGAATAGATTGGAACTTGAATTTTTATTTAATCTGGACTTCAAATTGCAAGTAACAGTCAGTACATTTGAAAGCTATTGCTTGAAGTTAGAGAAAGAAGTTGCTGTTGGTGGTGGCTACCAAATTGAGCGACCTCTCCAGTTTGTTTGTGGTCGCAATGGCTTAAATAATAAAGAGGAAACAAAAGGACAATCGGTGGTGCCAAGGTTCACCTATGGTGCTGTATAA___GGAGCAGCTTTCTTGTAGTCAAGAATATCAGTGTTGGTTGAGGAGAAGCTGCCCTTGAGGAACTATTCTGATAACTTGCTACAAGGCTGTTTGTTTATTTCATCCAGCAGTTTAATCTTGACTGACCTTCCATGAATATGGGGTGAGGTAGCTTGCTTAGGCACTAAACTAAACTAGTATGAGTTTGAGCCTGGCATCTTTAGATCATGTCGGAGCATCATGTTCACAAGAGTTATGATTTTGTGTCTAAGTGCAGAAAAATCATGACTTGTGAGTGCAGAAATAATGCTTAAATCATGTCGGAATTCTAGGCTGTTCTTGTATCAGCAGCTTTTCTCAGTCGGATGCATTGATTTGTGGCTTGATTACGACTCATTTTTAACTAAACCAGATCATCTTTAGTTTGCAGGTTTTGGGTACCATCAAGAAGTAATAAAAACTTCTACCTCAGAAGGCATGTTTGCAAGTAAATCAGTATGAACTATGGGTTTAGTGAGGAAGAAGTTCTGGAGCTTCTTGTTTAGATGCTTGCGGGAAAATATTTTGTGCCCCTTTTGTATATCAACGTGAAAATCAGCTCTACTGTTCATGTTGGTGGAAGGATCTTAAAGAATCTTTATGTTTTCAGGTACGATGTGGTACTATGGATTTGTACGGAAATCAATCATATGCTATGTAGCATAGTTTGTGACCATAAAACTGTTTTAGTTTAGTTTCACATCATAATATTTAATCTTTATATTTTATT

Fln Alignment:

sp_v1.1_unigene28956___LDLSESEVGF-----CESPRVLPILASLLDRVVQRNEKL-LEATKKQEKITVFHGLRAPNLSIRSYIDRIFKYSNCSPSCFTLAYVYIDRFIHQQPEVPITSLNVHRLLITSVMVAAKFVDDAFFNNAYYAKVGGVSTLEMNRLELEFLFNLDFKLQVTVSTFESYCLKLEKEVAVG-GGYQIERPLQFVCGRNGLNNKEETKGQSVVPR
A9NP68_______________LGVEEEEEGYECPPESQLPRILAVLSYALQRLVTRNDQCALPADGK--KITVFHGVRSPSITVAKYLERIYKYTSCSPSCFVVGYVYIDRLVHRQPDFPVISLNIHRLLLTSVMIAAKMLDDAHYNNAFYARVGGISNTELNRLEIDFLFRLGFRLKVTGKVFESYCLHLEKEMLLGTAGQRIERTLP-EFHRVSLESDSAKREESKVPR

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
405			83	16	0.994512
407	16			83	0.994512
408		16		83	0.994512
413	83		16		0.994512
414	83	16			0.994512
415		83		16	0.994512
437		14		85	0.993533
438			14	85	0.993533
439		85		14	0.993533
479	28		71		1.0
611	83		16		0.994512
630	40		60		1.0
631			20	60	0.99255
782		85		14	0.993533
822			87	12	0.992554
913	10			90	0.90298
916	90		10		0.90298
917	90		10		0.90298
918	11			77	0.968132
1060	20			80	0.995493
1363	83	16			0.994512
1427		80		20	0.995493
1517	80			20	0.995493
1518	80		20		0.995493
1519	80		20		0.995493
1522		80	20		0.995493
1523	80			20	0.995493
1524		20	80		0.995493
1670	16		83		0.994516
1671	80	20			0.995493
1758		25		75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain