SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28954

Length: 2238 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene28954
CGTCGTGACCTTGGCTGTCACTCAAAGTTGTTTCAGAAGAAGGAGCCTCGGGGGACAGAAGGAATATGATTCATTGGGACAAAATGAAGAGCCTTCAGGATTGATTCGAGCAAATACAATGCCTAGTATGTCCTCAAATTACGAAGCACCCGCATCTCTAGAGAATGATCATTCATTTAAAAGATCCATAACCGAGCGAAGAAAAGGGAACAAAGCCCCTGATGAGGACAATACACATGGCGCACCGGAGAAAATATCTAACCGAAAGAAGATGAAAATTATGAAGAAAATAGCAATGGTCAAGGGAGATGGCACCGTGGAACTTGATGTTAAAGGTAGTGCTAGATATGCAGCAGATCTATTTGGTTCTGGGATGGGATCTTCAGCTGTAGAAGAGGTTGGAGAGGAGGAAGAGGATGAAGGGGATAAGCGAAGTGTTCCACCCCTTCAGATAGCAATGCTGATTGTTGGTACACGAGGTGATGTACAACCATTCGTAGCCATTGGTAAACATTTGCAGGAGTATGGGCACCGTGTGAGATTAGCAACTCATTCAAATTTTGAGGAATTTGTATTGACGGCTGGTCTTGAGTTCTATCCACTTGGGGGAGATCCAAAAGTTCTTGCTGAATACATGGTTAAGAACAAAGGGTTTTTGCCATCTGGGCCATCAGAGATAGCCATACAGAGGAAACAGTTAAAGGCTATTATATACTCCTTATTGCCAGCATGCACAGAACCTTTTGGGGATTCAGGTGTCAAATTTCGAGCAGATGCGATACTTGCAAACCCTCCAGCATATGGTCATGTGCATGTGGCAGAGGCTCTTAAAGTGCCATTACATATATTCTTCACGATGCCGTGGACGCCAACAAGTAAATTCCCACATCCACTGTCACGTGTCAAGCAGCCAGCCGGCTATCGGTTGTCATATCAAGTTGTAGATTCTTTAATTTGGTTAGGAATTCGAGGTATAATCAATGATTTTCGGAAGAAGAAACTGAAACTGCGTCCAGTAACATATCTAAGTGGCACCCAAGGATCTATTACGGACCTTCCTACTGGATATATCTGGAGTCCACAACTTGTCCCCAAACCAGAAGATTGGGGACCTAAAGTTGATGTGGTAGGATTCTGTTTTCTGAATCTTGCCGAGGATTTCAGGCCACCGGAGTCTCTTTTAAAATGGCTTGAAGCTGGCAAAGCACCTATTTATGTGGGGTTTGGAAGTCTTCCTGTTCAAGATCCACAAGGCATGACGACTATCATTGTGAATGCAATAAAACAAACTGGCCAAAGAGGAATCATTAATAAGGGTTGGGGAGGTCTTGGAAACTTGGCAGAGCCGGCTGACTTCATTTACACACTTGATAACTGCCCTCACGATTGGTTGTTTCCACGTTGTGCAGCTGTGGTACATCATGGTGGAGCAGGAACAACTGCAGCTGGACTCAAAGCTGGGTGCCCTACTACCATTGTTCCTTTTTTTGGAGATCAGCCATTCTGGGGGGAAAGAGTGCATGCTAGAGGCCTTGGGCCTCCACCCATTCCTGTAGATCAGTTTTCGCTGACCAAGCTTGTTGATGCAATTCAAATCATGCTTAACCCACAGGTAAAGAATAATGCAGATGCAATTGCCAAGGCAATGGAGAACGAAGATGGAGTGTCAGGAGCAGTAAAGGCATTTCATAAACATTTACCCAAAAAAATGCCACAACCACTGCCACCACCTACAGATCATAGTCTAATTGATTCCTTCTTTACAGGTGTTGGAAAGGTTTTTGGTTGTGGCTGATTGTACCTTAATATAACGTTTATCAACTATTAGGCTGGTAGGCTTTGAAGGTAAAACTGAAAATTGAGTGCTTGAACTTGTACATATGACAAATTCAGATTTTGTTTCCTTTTGGTTTGAATCCATATAATCAAATGATTCTTTGGCATGAGGCAAGCACATTCAGCTCTTCAAATCATCTTTTTTCCTTTCTAAGGCTGTTTCTGGTTCACTTCATTTATTATCAAACAAAATATACAGGTTTCAAACTTTCATGTACAACAACTACAGCTCTCAAAACCAGACATTGAAAAGCTCCCTCGCTCTCTTTTACATATCGCAGAATGGAGAGGTCAACATAACAGATGTCACCTGGGGCACTTAATGTGGAACACATCAGTTTGATGGATACAAGACTCAAAATTAATTAAAATACCTCCCTTGTAGGAGATTATTGTTAAAAG

Ace file of the UniGene sp_v1.1_unigene28954

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	OSJNBb0080H08.21 protein n=3 Tax=Oryza sativa RepID=Q7XRN9_ORYSJ	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	67%
Blast2go	udp-glucose:sterol glucosyltransferase	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	80%
Blast2go	Glycosyl transferase, family 28	IPR004276	-	0.0	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B8AUM3

Fln msg:

Fln protein: VVTLAVTQSCFRRRSLGGQKEYDSLGQNEEPSGLIRANTMPSMSSNYEAPASLENDHSFKRSITERRKGNKAPDEDNTHGAPEKISNRKKMKIMKKIAMVKGDGTVELDVKGSARYAADLFGSGMGSSAVEEVGEEEEDEGDKRSVPPLQIAMLIVGTRGDVQPFVAIGKHLQEYGHRVRLATHSNFEEFVLTAGLEFYPLGGDPKVLAEYMVKNKGFLPSGPSEIAIQRKQLKAIIYSLLPACTEPFGDSGVKFRADAILANPPAYGHVHVAEALKVPLHIFFTMPWTPTSKFPHPLSRVKQPAGYRLSYQVVDSLIWLGIRGIINDFRKKKLKLRPVTYLSGTQGSITDLPTGYIWSPQLVPKPEDWGPKVDVVGFCFLNLAEDFRPPESLLKWLEAGKAPIYVGFGSLPVQDPQGMTTIIVNAIKQTGQRGIINKGWGGLGNLAEPADFIYTLDNCPHDWLFPRCAAVVHHGGAGTTAAGLKAGCPTTIVPFFGDQPFWGERVHARGLGPPPIPVDQFSLTKLVDAIQIMLNPQVKNNADAIAKAMENEDGVSGAVKAFHKHLPKKMPQPLPPPTDHSLIDSFFTGVGKVFGCG*

Protein Length: 599

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTGTTTCAGAAGAAGGAGCCTCGGGGGACAGAAGGAATATGATTCATTGGGACAAAATGAAGAGCCTTCAGGATTGATTCGAGCAAATACAATGCCTAGTATGTCCTCAAATTACGAAGCACCCGCATCTCTAGAGAATGATCATTCATTTAAAAGATCCATAACCGAGCGAAGAAAAGGGAACAAAGCCCCTGATGAGGACAATACACATGGCGCACCGGAGAAAATATCTAACCGAAAGAAGATGAAAATTATGAAGAAAATAGCAATGGTCAAGGGAGATGGCACCGTGGAACTTGATGTTAAAGGTAGTGCTAGATATGCAGCAGATCTATTTGGTTCTGGGATGGGATCTTCAGCTGTAGAAGAGGTTGGAGAGGAGGAAGAGGATGAAGGGGATAAGCGAAGTGTTCCACCCCTTCAGATAGCAATGCTGATTGTTGGTACACGAGGTGATGTACAACCATTCGTAGCCATTGGTAAACATTTGCAGGAGTATGGGCACCGTGTGAGATTAGCAACTCATTCAAATTTTGAGGAATTTGTATTGACGGCTGGTCTTGAGTTCTATCCACTTGGGGGAGATCCAAAAGTTCTTGCTGAATACATGGTTAAGAACAAAGGGTTTTTGCCATCTGGGCCATCAGAGATAGCCATACAGAGGAAACAGTTAAAGGCTATTATATACTCCTTATTGCCAGCATGCACAGAACCTTTTGGGGATTCAGGTGTCAAATTTCGAGCAGATGCGATACTTGCAAACCCTCCAGCATATGGTCATGTGCATGTGGCAGAGGCTCTTAAAGTGCCATTACATATATTCTTCACGATGCCGTGGACGCCAACAAGTAAATTCCCACATCCACTGTCACGTGTCAAGCAGCCAGCCGGCTATCGGTTGTCATATCAAGTTGTAGATTCTTTAATTTGGTTAGGAATTCGAGGTATAATCAATGATTTTCGGAAGAAGAAACTGAAACTGCGTCCAGTAACATATCTAAGTGGCACCCAAGGATCTATTACGGACCTTCCTACTGGATATATCTGGAGTCCACAACTTGTCCCCAAACCAGAAGATTGGGGACCTAAAGTTGATGTGGTAGGATTCTGTTTTCTGAATCTTGCCGAGGATTTCAGGCCACCGGAGTCTCTTTTAAAATGGCTTGAAGCTGGCAAAGCACCTATTTATGTGGGGTTTGGAAGTCTTCCTGTTCAAGATCCACAAGGCATGACGACTATCATTGTGAATGCAATAAAACAAACTGGCCAAAGAGGAATCATTAATAAGGGTTGGGGAGGTCTTGGAAACTTGGCAGAGCCGGCTGACTTCATTTACACACTTGATAACTGCCCTCACGATTGGTTGTTTCCACGTTGTGCAGCTGTGGTACATCATGGTGGAGCAGGAACAACTGCAGCTGGACTCAAAGCTGGGTGCCCTACTACCATTGTTCCTTTTTTTGGAGATCAGCCATTCTGGGGGGAAAGAGTGCATGCTAGAGGCCTTGGGCCTCCACCCATTCCTGTAGATCAGTTTTCGCTGACCAAGCTTGTTGATGCAATTCAAATCATGCTTAACCCACAGGTAAAGAATAATGCAGATGCAATTGCCAAGGCAATGGAGAACGAAGATGGAGTGTCAGGAGCAGTAAAGGCATTTCATAAACATTTACCCAAAAAAATGCCACAACCACTGCCACCACCTACAGATCATAGTCTAATTGATTCCTTCTTTACAGGTGTTGGAAAGGTTTTTGGTTGTGGCTGA___TTGTACCTTAATATAACGTTTATCAACTATTAGGCTGGTAGGCTTTGAAGGTAAAACTGAAAATTGAGTGCTTGAACTTGTACATATGACAAATTCAGATTTTGTTTCCTTTTGGTTTGAATCCATATAATCAAATGATTCTTTGGCATGAGGCAAGCACATTCAGCTCTTCAAATCATCTTTTTTCCTTTCTAAGGCTGTTTCTGGTTCACTTCATTTATTATCAAACAAAATATACAGGTTTCAAACTTTCATGTACAACAACTACAGCTCTCAAAACCAGACATTGAAAAGCTCCCTCGCTCTCTTTTACATATCGCAGAATGGAGAGGTCAACATAACAGATGTCACCTGGGGCACTTAATGTGGAACACATCAGTTTGATGGATACAAGACTCAAAATTAATTAAAATACCTCCCTTGTAGGAGATTATTGTTAAAAG

Fln Alignment:

sp_v1.1_unigene28954___EEPSGLIRANTMPSMSSNYEAPASLENDHSFKRSITERRKGNKAPDEDNTHGAPEXXXXXXXXXXXXXXXXXXGDGTVELDVKGSARYAADLFGSGMGSSAXXXXXXXXXXXXXKRSVPPLQIAMLIVGTRGDVQPFVAIGKHLQEYGHRVRLATHSNFEEFVLTAGLEFYPLGGDPKVLAEYMVKNKGFLPSGPSEIAIQRKQLKAIIYSLLPACTEPFGDSGVKFRADAILANPPAYGHVHVAEALKVPLHIFFTMPWTPTSKFPHPLSRVKQPAGYRLSYQVVDSLIWLGIRGIINDFRKKKLKLRPVTYLSGTQGSITDLPTGYIWSPQLVPKPEDWGPKVDVVGFCFLNLAEDFRPPESLLKWLEAGKAPIYVGFGSLPVQDPQGMTTIIVNAIKQTGQRGIINKGWGGLGNLAEPADFIYTLDNCPHDWLFPRCXXXXXXXXXXXXXXXLKAGCPTTIVPFFGDQPFWGERVHARGLGPPPIPVDQFSLTKLVDAIQIMLNPQVKNNADAIAKAMENEDGVSGAVKAFXXXXXXXXXXXXXXXTDHSLIDSFFTGVGKVFGC
B8AUM3_______________DDDRGLPRSSTMPGGINNVEITNETAGPSNLERSRTERRRQNNPADDPTKQLFDDKISLKKKLKMINRIATVKHDGTVVVDVPSSLETSTTDGVAYDGYSDVTVEEPLDGADIPVR--PPMQIVILIVGTRGDVQPFIAIGKRLQDYGHRVRLATHANFKEFVLTAGLEFFPLGGDPKILAEYMVKNKGFLPSGPSEIPIQRKQMKEIIFSLLPACKEPDPDTGIPFKVDAIIANPPAYGHTHVAEALKVPIHIFFTMPWTPTSEFPHPLSRVKQAAGYRLSYQIVDSMIWLGIRDMINEFRKKKLKLRPVTYLSGAQGSGNDIPHGYIWSPHLVPKPKDWGPKIDVVGFCFLDLASNYVPPEPLVKWLEAGDKPIYVGFGSLPVQDPAKMTEVIVKALEITGQRGIINKGWGGLGTLAEPKDFVYLLDNCPHDWLFLQCKAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGDRVHARGVGPLPIPVDQFSLQKLVDAINFMMEPKVKDNAVELAKAMESEDGVSGAVRAFLRHLPSRAEETAPQQTSSFL--EFLGPVSKCLGC

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1300		12		87	0.992554
1321		14		85	0.993533
1369	14			85	0.993533
1371	85		14		0.993533
1372		85	14		0.993533
1373	85		14		0.993533
1411	16		83		0.994512
1413		16		83	0.994512
1427	83		16		0.994512
1456	11	88			0.991528
1559	14	85			0.993533
1632	83		16		0.994512
1875		20		80	0.995493
2058	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain