SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28942

Length: 1889 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28942

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	29%
Blast2go	hypothetical protein VITISV_016382 [Vitis vinifera]	-	-	3.53678e-22	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M3G7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 2815 aas, your sequence is shorter than subject: 479 - 3856

Fln protein: VTSDVLNNDSKVMDSKELMSISPKVDQDAKKLPKSFKVGECMRKVASKLTPRPLGTRSMDGSGWQHPQEGAANLAMKTEKSTFGSPSSKQCATKPVGETNSTGELLCELLVVAQNPLYWAKKMKMLSRLINYFLEFRNAVFEKSSMNSDISKAAARNFANQSHKLKSSQSSSKSPSTADSKDLGWTDQAHYLRPTGHVVQTRLKRKAKFPAEDARKKKKPAIRLSKSPLSKKGSKQERKEETGNRYAKQYSRRSMIPDSPVNSLAGSAADKTVNQKPASLFMRFPRGFALPSEIELKAKFARFGPLDISETKVFRRSGCAQVAFKRSSAAESAFNYVSENDIFGSTTVSFRLRYPSPETQVDTAQKNERGKHGRGTSVSKDVVKDADGLHENLVQPSDSVALSAEKLSTSKPNNSGEPQLLLIQQNLEMLTSMLSRSNYASTSSTTKSDNVEPDSKADIMDEMMSLLQKVSALVSPQP*

Protein Length: 480

Fln nts: AGTCACCTCAGATGTTTTAAATAATGATTCTAAGGTTATGGATTCGAAGGAGTTGATGTCTATATCTCCCAAGGTCGATCAAGATGCAAAGAAGTTGCCAAAATCATTTAAGGTTGGTGAATGCATGAGAAAAGTTGCGAGCAAGCTTACCCCCAGACCTTTAGGTACAAGGAGCATGGATGGCAGTGGTTGGCAGCATCCCCAGGAAGGTGCTGCCAACTTAGCTATGAAAACTGAAAAGAGTACTTTCGGTTCACCTTCCAGCAAACAGTGTGCCACAAAGCCTGTTGGAGAGACCAATTCTACTGGTGAACTATTGTGTGAGCTTCTGGTAGTTGCTCAGAATCCTTTGTATTGGGCTAAGAAAATGAAGATGCTTTCCAGATTAATAAATTATTTCCTAGAGTTCAGAAATGCTGTTTTTGAGAAAAGTTCAATGAACTCTGATATATCGAAGGCTGCTGCTCGTAATTTTGCAAATCAGTCGCATAAACTAAAATCTTCACAAAGTTCCAGCAAGTCCCCCAGCACTGCAGATTCTAAAGATTTAGGCTGGACTGATCAAGCACACTATCTGAGGCCTACAGGTCATGTGGTGCAAACAAGGTTGAAGAGAAAGGCCAAATTTCCGGCAGAAGATGCCCGGAAGAAGAAAAAACCTGCTATCAGATTATCTAAGTCACCTTTGTCAAAGAAGGGTTCTAAACAAGAACGTAAAGAGGAAACAGGAAATCGCTATGCGAAACAGTATTCCAGAAGGTCAATGATACCTGACTCACCTGTTAATTCTTTGGCAGGTTCTGCTGCTGATAAAACTGTGAACCAGAAACCTGCATCTCTTTTCATGAGATTTCCCAGGGGATTCGCTTTGCCTTCAGAAATTGAATTGAAAGCAAAGTTTGCTCGCTTTGGTCCTCTAGATATATCTGAAACAAAGGTTTTCAGACGTTCAGGCTGTGCTCAGGTTGCATTCAAAAGGTCTTCTGCGGCAGAATCAGCTTTCAATTATGTATCAGAAAATGACATTTTTGGATCAACAACAGTCAGTTTTAGGCTTAGATATCCTTCACCTGAAACACAGGTAGACACAGCACAAAAGAATGAACGTGGGAAACATGGAAGAGGTACTTCTGTGTCAAAGGATGTAGTTAAAGATGCAGACGGGCTTCATGAGAATCTGGTGCAACCATCTGATTCGGTTGCTCTTTCTGCGGAGAAACTGAGCACATCAAAACCAAACAACTCAGGGGAGCCTCAACTTTTGCTGATCCAACAAAATCTGGAAATGCTCACTTCAATGCTTTCTCGTTCCAATTATGCATCAACATCATCCACTACAAAATCAGATAATGTAGAACCAGATTCTAAAGCAGATATAATGGATGAGATGATGTCTCTTTTGCAGAAAGTTAGTGCACTGGTTTCCCCACAGCCTTAGATTAATTTGTCTAGTAATTGGCAAAGATTCCAGAACACAACTAACTTGAATAATAATGAACATAGTTTTGTGAATGCAACAAGTGTGCACTGTGTTATTGTTTTTCATGGAAGCATTTAACCTGAAAACAGTGGAAGAACACAGCAAAGGTATGCCGAATCTCTAGAGTTTAGTTTCTGAATTTGTATATAGAATGCTGCATGTCTTTCAATGGCAGTTACTACAACGTATGCCTTTTTATGGCAAGCTACTATTATGCTACAAATGTGTTATCTTTTTGGTAAGAGTGGTAATGTTTGAAATGGACTAGAGTCCAGTTGAAAACTCCTGGTAGATTCTGGACATCCATGCATATATTTGGACACTTCGATTATCTATCAATTTAATGCAACCAGCCCTTTATTGTAGCTCAGTGGAGCAAATGTATTGTTATAATTCTCATCTCTTCACG

Fln Alignment:

sp_v1.1_unigene28942___LFMRFPRGFALPSEIELKAKFARFGPLDISETKVFRRSGCAQVAFKRSSAAESAFNYVSENDIFGSTTVSFRLRYPSPETQVDTAQKNERGKHGRGTSVSKDVVKDADGLHENLVQPSDSVALSAEKLS-TSKPNNSGEPQLLLIQQNLEMLTSML
Q9M3G7_______________LFLKFSSQVSMPSRDDLTSTFSAFGPLDSSETHVSEEFSGAQVAFVSSADAIEAVKSLEKANPFGETLVNFRLQQKLITVQRNIAPRMPVISHVSPVPKPNNIPTSMDAMRQNLLMMTAMLEKSGDSLSRETKAKLKSEITGLLEKDGVKLLNTWL

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
855	14	85			0.993533
856		85		14	0.993533
857		85	14		0.993533
858	85		14		0.993533
937	83		16		0.994512
947	83		16		0.994512
1025		90		10	0.90298
1119	16		83		0.994512
1120		16	83		0.994512
1122	83			16	0.994512
1124	83		16		0.994512
1129	33	66			1.0
1141	87			12	0.992554
1143		12	87		0.992554
1144	87	12			0.992554
1145	12			87	0.992554
1146		12	87		0.992554
1147	12			87	0.992554
1149		12	87		0.992554
1150			12	87	0.992554
1151	25			75	1.0
1152	87			12	0.992554
1153	87	12			0.992554
1366		85	14		0.993533
1367			14	85	0.993533
1368	85			14	0.993533
1369	85			14	0.993533
1370	87	12			0.992554
1372		75		12	0.975346
1373	75	12		12	0.975346
1374			87	12	0.992554
1375	87			12	0.992554
1376			12	87	0.992554
1378		12		87	0.992554
1379	87	12			0.992554
1380	87			12	0.992554
1384	87	12			0.992554
1387	87			12	0.992554
1388		12	87		0.992554
1391	14		85		0.993533
1427		83	16		0.994512
1428		66		33	1.0
1430	83		16		0.994512
1431		83		16	0.994512
1432	83		16		0.994512
1433	16		83		0.994512
1438	83		16		0.994512
1440	83	16			0.994512
1444	83	16			0.994512
1446	16			83	0.994512
1509			80	20	0.995493
1645		20		80	0.995493
1663		80		20	0.995493
1752			75	25	0.996473
1801		50	50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain