SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28906

Length: 1454 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28906

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	r2r3-myb transcription factor, putative	-	-	2.0e-37	83%
FL-Next	tr=R2R3-MYB transcription factor MYB3; Pinus taeda (Loblolly pine).	-	-	0.0	92%
Blast2go	myb family transcription factor	-	-	3.7597e-38	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	3.7597e-38	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q27IN9

Fln msg: Separated hits, possible frame ERROR between 84 and 104,

Fln protein: QNWNLIAEKLEGRSGKSCRLRWFNQLDxxxxxxxxFSEEDEEKLLAAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARRYREQSSAFGRRKLPQVHRREKRACTDDETRMGTSCNMWVDKYSSLKSAHDVIFRRGSVCKSQILGDNSSCVTAFGASRVDNDERCGNLDRLQQRISAASIARHQQQQQQQKGYMSSLDAVQSRIFFEGSREMKINNNYNKAVDVLGSNVDNYHILVSQMEGESSSPSQLTTDSCAAVSLLQGAFASSKRSSVVNTNFSLGHQQEVVQYGYSDSSASDQLSAVEVSYADNSSTTEAANEFKKPNAGFIDFLGVGTT*

Protein Length: 338

Fln nts: CAGAACTGGAACCTGATAGCAGAGAAGCTTGAAGGAAGATCAGGAAAGAGCTGCAGGCTTCGATGGTTTAATCAGTTGGACCCxxxxxxxxxxxxxxxxxxxxxTTTCAGTGAAGAAGATGAGGAGAAGCTACTGGCAGCCCATCGTTTATATGGGAATAAATGGGCCATGATTGCCCGCTTATTTCCTGGGAGAACTGATAACGCTGTGAAGAACCATTGGCACGTTATCATGGCCAGGAGATACAGAGAGCAATCCAGTGCTTTTGGGAGAAGGAAATTGCCTCAAGTGCATAGAAGAGAGAAACGTGCCTGCACTGATGATGAAACGAGGATGGGCACCAGCTGCAACATGTGGGTGGATAAATATAGCTCTCTCAAATCTGCCCATGATGTAATTTTCAGAAGAGGATCTGTATGTAAGAGCCAGATTTTGGGAGATAACTCATCATGTGTTACAGCTTTTGGTGCTTCTAGGGTTGATAATGATGAACGGTGTGGAAATTTGGATAGATTGCAACAGAGAATCAGTGCAGCTTCCATTGCTCGTCACCAGCAGCAGCAGCAGCAGCAGAAAGGTTACATGAGCAGCTTGGATGCAGTTCAATCCAGGATTTTCTTTGAAGGGTCCAGGGAGATGAAGATCAATAACAACTATAATAAGGCTGTGGATGTGTTAGGCAGCAATGTGGACAATTATCATATATTGGTCTCACAGATGGAAGGAGAATCATCTTCCCCCAGCCAGCTGACAACTGATTCCTGTGCTGCAGTGAGTTTATTGCAAGGTGCTTTTGCAAGTTCCAAGAGATCTTCAGTTGTCAATACAAATTTTAGTCTTGGTCATCAGCAGGAGGTTGTGCAGTATGGGTACTCAGATTCTAGTGCCTCCGATCAGTTATCCGCTGTGGAGGTTTCTTATGCTGATAACTCATCGACTACGGAAGCGGCGAATGAGTTCAAGAAACCTAATGCAGGTTTCATTGATTTTCTGGGAGTAGGGACAACATGAAGTAATTTATTACCATCTAGGGTTTATTTCATGGGGTCATTTATTATTCAAACTTGTTGTTTGACGACTGCATTGATGTTGTCTGAAGAGGCGTTTAAAACAGAGAGAGAGGGAGCTGGGTCGGTTACTGCCATTGGCGATGGGAAATATTTGTGTACAGGAAAAAAATCAATATGGAGAAACAAAAAAGATCAGCACCATCATCATCATTTACAGATTTTGTCCCCAAGTGGTGTGATGAAAACATCACTTCTGCTTCTGCTTCTGTTGCTGCTGCATGTGTATATTACAGTCCAGTAATAATTCCAAAGTATCGATATGGAAAAACAAATATTTCATCAAATCAATATGTGTACTGGATATATCATCACATTTCTCTTTTTAAGTGATCGTGATTAACAGTCTGACACAGCTTGCATTGTCAATACAATAATACTTCTCATGA

Fln Alignment:

sp_v1.1_unigene28906___QNWNLIAEKLEGRSGKSCRLRWFNQLDPxxxxxxxFSEEDEEKLLAAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARRYREQSSAFGRRKLPQVHRREK
Q27IN9_______________QNWNSIAEKLHGRSGKSCRLRWFNQLDPxxxxxxxFTEEEEERLLAAHRLHGNKWAMIARLFPGRTDNAVKNHWHVIMARKFRERSRIYGKRRSSCSHLMRK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
598	80		20		0.995493
839		16	83		0.994512
861	83		16		0.994512
1179	11			88	0.923564

SSRs (tot: 3)

Start position	End position	Sequence	Length
551	571	CAG CAG CAG CAG CAG CAG CAG	21
1208	1219	CAT CAT CAT CAT	12
1259	1276	CTTCTG CTTCTG CTTCTG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain