SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28897

Length: 285 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene28897
GAGACTTTATCACATGTAGAGGGGCATATTGAACTACAGAAGGTTTGCTTCAGTTATCCATCTCGAAAAGAAATTGTCTTCCAAGATTTTTGCCTTTCTATTCCTGCCGGCAAGACAGTAGCACTTGTTGGTCATAGTGGATCTGGCAAAAGCACAATCATTTCCTTAATTGAACGCTTCTATGATCCTAGTGCAGGTAAAGTGCTGTTGGACGGGCATGATCTAAGGAGTCTGCAGCTGAAGTGGTTAAGGGAGCAGATAGGACTCGTCAGTCAAGACCAGCAT

Ace file of the UniGene sp_v1.1_unigene28897

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter n=2 Tax=Selaginella moellendorffii RepID=D8RF00_SELML	-	-	5.0e-31	70%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	60%
Blast2go	atp-binding cassette transporter	-	-	9.27009e-31	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive gravitropism	GO:0009958	Biological Process	9.27009e-31	84%
Blast2go	auxin polar transport	GO:0009926	Biological Process	9.27009e-31	84%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	9.27009e-31	84%
Blast2go	response to blue light	GO:0009637	Biological Process	9.27009e-31	84%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	9.27009e-31	84%
Blast2go	regulation of cell size	GO:0008361	Biological Process	9.27009e-31	84%
Blast2go	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	9.27009e-31	84%
Blast2go	stamen development	GO:0048443	Biological Process	9.27009e-31	84%
Blast2go	response to nematode	GO:0009624	Biological Process	9.27009e-31	84%
Blast2go	auxin efflux transmembrane transporter activity	GO:0010329	Molecular Function	9.27009e-31	84%
Blast2go	ATPase activity	GO:0016887	Molecular Function	9.27009e-31	84%
Blast2go	protein binding	GO:0005515	Molecular Function	9.27009e-31	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.27009e-31	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Distance to subject end: 156 aas, your sequence is shorter than subject: 95 - 1316

Fln protein: ETLSHVEGHIELQKVCFSYPSRKEIVFQDFCLSIPAGKTVALVGHSGSGKSTIISLIERFYDPSAGKVLLDGHDLRSLQLKWLREQIGLVSQDQH

Protein Length: 96

Fln nts: GAGACTTTATCACATGTAGAGGGGCATATTGAACTACAGAAGGTTTGCTTCAGTTATCCATCTCGAAAAGAAATTGTCTTCCAAGATTTTTGCCTTTCTATTCCTGCCGGCAAGACAGTAGCACTTGTTGGTCATAGTGGATCTGGCAAAAGCACAATCATTTCCTTAATTGAACGCTTCTATGATCCTAGTGCAGGTAAAGTGCTGTTGGACGGGCATGATCTAAGGAGTCTGCAGCTGAAGTGGTTAAGGGAGCAGATAGGACTCGTCAGTCAAGACCAGCAT

Fln Alignment:

sp_v1.1_unigene28897___LSHVEGHIELQKVCFSYPSRKEI-VFQDFCLSIPAGKTVALVGHSGSGKSTIISLIERFYDPSAGKVLLDGHDLRSLQLKWLREQIGLVSQD
E6Y0T0_______________LDNVKGDIEFQHVSFKYPTRPDVQIFRDLCLFVHSGKTVALVGESGSGKSTAIALLERFYDPDSGRIFLDGVEIRQLQLKWLRQQMGLVSQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain