SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28896

Length: 2492 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene28896
TGGAGAAGTCTGGAGGTCGATATCGATATAGCGAAGAAAGCTCAGGGGAATGGGAGGGAAGAAGCCATACTGGTAAGCGGACGGAGCAGAAGAGTGTTTTCTTAACGAAAAGCAAGCAGACGAAGAAAGATTTATATGAGGTGAGGTGAGGTGAGTTGTTGGGAAGCAGGAGGCAATGGCGGGGGGTGTTGGGGTTCGAGGGCCTCGCGGGGGAGGATCAAAGGTGGGAGGGGGCTTTTCTTCCTCTTCCTCCTTGAAGCTCAACAAGCTAAAGCTGCTGCTGCTCCTCCTCCTCTTGGTACCCACAATGTTTCTCCTGCTTTTTTTCATCACCACTGGATCTCTGCTCTACCGCGTCAACACCGCCCCTTATCCTGTTCAAATCTCCAGCACAAACACTCCCTACAATAATCACCTCCTACACGCCTACGTGGCCCGGACCTTCCTTGCCCTCAAGTCAGATCCGCTGAAAACCCGGTTGGATCTGCTGTTCAAGCAAGCGTATGACCACCTCAGCCTGATCAATGCATATGCTGCGTATGCCCGCAGACTCAAGCTTGAGAACATGAAGCAGGTTCGAATCTTCACAGATCAGGCCAGAAACTACACGGAACTAATGAATAAACCCGAGTATCGGGCTCTAATGGATACTAATGATATGATCGATGAAGAAACCCTTAGGCAATTTGAGAAGGAGGTGAAAGAAAGGATCAAGGTCACACGGCAATTGATTGCTGACGCTAAAGAGTCGTTTGATAACCAGTTGAAGATCCAAAAGCTCAAGGACACAATATTTGCTGTGAACGACCAGTTAACCCGGGCTAAGAAGCAGGGGGCTTTTGCTAGCTTAATTGCAGCTAAGTCCATCCCTAAGAGCATCCATTGCCTGTCTATGAGGTTAATGGAGGAACGGATCTCACAGCCAGAAAAGTATATTGATAAAGGCGACCCTCCGCCACAGTGGGAGGACCCTAACCTCTACCATTATGCCATATTTTCCGACAATGTCATTGCTGCTTCGGTTGTCGTCAATTCTGCAGTTAAGAATGCCAAAGAACCCTGGAAGCATGTATTTCATGTCGTAACCGACAAGATGAATCTTGCCGCAATGCAGGTCTGGTTCAAGATGCGCTCGCTAAATGGATCACATGTTGAGGTTAAAGCTGTTGAGGATTACAAGTTCTTGAATTCTTCCTATGTTCCGGTTTTGCGACAGCTCGAGTCCGCTAACTTGCAAAGGTTTTACTTCGAGAATAAGTTGGAGAATGCAACAAAGGATGCTCCTAATATGAAGTTTAGGAATCCCAAGTATCTTTCCATGTTGAATCATCTGCGCTTTTATTTGCCTGAGATGTATCCAAAGTTACACCGGATCTTGTTTCTAGATGATGATGTTGTTGTTCAGAAGGACCTGACGGGATTATGGGAGATAGATATGGAAGGAAAGGTTAACGGGGCTGTGGAGACATGCTTTGGTTCATTCCATCGTTATGATAAGTATATGAATTTCTCTCATCCTCTGATCAAGGCAAGATTCAATCCCAAGGCTTGTGGTTGGGCTTATGGAATGAATTTCTTCCACTTGGATGCATGGAGAAGGGAGAAGTGTACTGAAGAATATCACTACTGGCAAAACCTGAATGAGAATCGTACATTGTGGAAGCTGGGGACATTACCACCAGGCCTGATCACTTATTATAAAACAACCAAGCCTCTAGATAAATCTTGGCATGTTCTTGGTCTTGGATATAACCCCAGTATTAGTATGGACGAAATCCGCAATGCAGCCGTTGTTCACTTCAATGGAAATATGAAACCATGGCTTGATATTGGCATGAATCAATATCGAGACACCTGGACCAAGTATGTAGACTATGATATGGAGTTTATACAGATGTGCAACTTCGGTCATTGAAAAAAAATCTCAAGGATTTGGAGTTATTTTATTTAAGCCGGCTAACATGCCTACAATAAGGCATGGTTTTATGTTATGCTTTGTTGCTAATCATATCTCATCAAGTTGCTAAAACATTTTACGGTTTATGTAAGGAGATGTCCGAGAATGTTATAGCTTCCTTTTTAAATTTGTTTAGAGATCTGTTGTGACTTTTGTAATATTTGATTGCGCTGTTGTAAAGTTTCTACCCGTTTAATTGTTATTTGGTTCCTCAATTTATGTTGGTTCATGGGATCATGGACTAAACAGAGAACATATTTCCTTTACTTGGGAATTTATAGAGTACAATAGCAATGCACTCTGGCAGGTAGATTGTGTCATGTCATACCTGGCCAGCTGAGATGTGGCTGAGATGCAGACCTGCTTAGTTTCAAGAAGATAAGGGTTAAGAAAATAATTGGTAGAGCATCTTCTAGTATTAATAATGTTTTGATTTTTGATGTACATTAGGTGCACCTATCCAGGATGTTAATAGAATTTATGTTTTTAGGTGCATCTGTCAGGGATATTAATTGAATTCCCATGGTAAATATTG

Ace file of the UniGene sp_v1.1_unigene28896

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase, CAZy family GT8 n=3 Tax=Malpighiales RepID=B9GQM0_POPTR	-	-	80%
FL-Next	sp=Galacturonosyltransferase 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	83%
Blast2go	quasimodo1-like protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	homogalacturonan biosynthetic process	GO:0010289	Biological Process	86%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	86%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LSG3

Fln msg:

Fln protein: MAGGVGVRGPRGGGSKVGGGFSSSSSLKLNKLKLLLLLLLLVPTMFLLLFFITTGSLLYRVNTAPYPVQISSTNTPYNNHLLHAYVARTFLALKSDPLKTRLDLLFKQAYDHLSLINAYAAYARRLKLENMKQVRIFTDQARNYTELMNKPEYRALMDTNDMIDEETLRQFEKEVKERIKVTRQLIADAKESFDNQLKIQKLKDTIFAVNDQLTRAKKQGAFASLIAAKSIPKSIHCLSMRLMEERISQPEKYIDKGDPPPQWEDPNLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLAAMQVWFKMRSLNGSHVEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDAPNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMCNFGH*

Protein Length: 581

Fln nts: TGGAGAAGTCTGGAGGTCGATATCGATATAGCGAAGAAAGCTCAGGGGAATGGGAGGGAAGAAGCCATACTGGTAAGCGGACGGAGCAGAAGAGTGTTTTCTTAACGAAAAGCAAGCAGACGAAGAAAGATTTATATGAGGTGAGGTGAGGTGAGTTGTTGGGAAGCAGGAGGCA_-_ATGGCGGGGGGTGTTGGGGTTCGAGGGCCTCGCGGGGGAGGATCAAAGGTGGGAGGGGGCTTTTCTTCCTCTTCCTCCTTGAAGCTCAACAAGCTAAAGCTGCTGCTGCTCCTCCTCCTCTTGGTACCCACAATGTTTCTCCTGCTTTTTTTCATCACCACTGGATCTCTGCTCTACCGCGTCAACACCGCCCCTTATCCTGTTCAAATCTCCAGCACAAACACTCCCTACAATAATCACCTCCTACACGCCTACGTGGCCCGGACCTTCCTTGCCCTCAAGTCAGATCCGCTGAAAACCCGGTTGGATCTGCTGTTCAAGCAAGCGTATGACCACCTCAGCCTGATCAATGCATATGCTGCGTATGCCCGCAGACTCAAGCTTGAGAACATGAAGCAGGTTCGAATCTTCACAGATCAGGCCAGAAACTACACGGAACTAATGAATAAACCCGAGTATCGGGCTCTAATGGATACTAATGATATGATCGATGAAGAAACCCTTAGGCAATTTGAGAAGGAGGTGAAAGAAAGGATCAAGGTCACACGGCAATTGATTGCTGACGCTAAAGAGTCGTTTGATAACCAGTTGAAGATCCAAAAGCTCAAGGACACAATATTTGCTGTGAACGACCAGTTAACCCGGGCTAAGAAGCAGGGGGCTTTTGCTAGCTTAATTGCAGCTAAGTCCATCCCTAAGAGCATCCATTGCCTGTCTATGAGGTTAATGGAGGAACGGATCTCACAGCCAGAAAAGTATATTGATAAAGGCGACCCTCCGCCACAGTGGGAGGACCCTAACCTCTACCATTATGCCATATTTTCCGACAATGTCATTGCTGCTTCGGTTGTCGTCAATTCTGCAGTTAAGAATGCCAAAGAACCCTGGAAGCATGTATTTCATGTCGTAACCGACAAGATGAATCTTGCCGCAATGCAGGTCTGGTTCAAGATGCGCTCGCTAAATGGATCACATGTTGAGGTTAAAGCTGTTGAGGATTACAAGTTCTTGAATTCTTCCTATGTTCCGGTTTTGCGACAGCTCGAGTCCGCTAACTTGCAAAGGTTTTACTTCGAGAATAAGTTGGAGAATGCAACAAAGGATGCTCCTAATATGAAGTTTAGGAATCCCAAGTATCTTTCCATGTTGAATCATCTGCGCTTTTATTTGCCTGAGATGTATCCAAAGTTACACCGGATCTTGTTTCTAGATGATGATGTTGTTGTTCAGAAGGACCTGACGGGATTATGGGAGATAGATATGGAAGGAAAGGTTAACGGGGCTGTGGAGACATGCTTTGGTTCATTCCATCGTTATGATAAGTATATGAATTTCTCTCATCCTCTGATCAAGGCAAGATTCAATCCCAAGGCTTGTGGTTGGGCTTATGGAATGAATTTCTTCCACTTGGATGCATGGAGAAGGGAGAAGTGTACTGAAGAATATCACTACTGGCAAAACCTGAATGAGAATCGTACATTGTGGAAGCTGGGGACATTACCACCAGGCCTGATCACTTATTATAAAACAACCAAGCCTCTAGATAAATCTTGGCATGTTCTTGGTCTTGGATATAACCCCAGTATTAGTATGGACGAAATCCGCAATGCAGCCGTTGTTCACTTCAATGGAAATATGAAACCATGGCTTGATATTGGCATGAATCAATATCGAGACACCTGGACCAAGTATGTAGACTATGATATGGAGTTTATACAGATGTGCAACTTCGGTCATTGA___AAAAAAATCTCAAGGATTTGGAGTTATTTTATTTAAGCCGGCTAACATGCCTACAATAAGGCATGGTTTTATGTTATGCTTTGTTGCTAATCATATCTCATCAAGTTGCTAAAACATTTTACGGTTTATGTAAGGAGATGTCCGAGAATGTTATAGCTTCCTTTTTAAATTTGTTTAGAGATCTGTTGTGACTTTTGTAATATTTGATTGCGCTGTTGTAAAGTTTCTACCCGTTTAATTGTTATTTGGTTCCTCAATTTATGTTGGTTCATGGGATCATGGACTAAACAGAGAACATATTTCCTTTACTTGGGAATTTATAGAGTACAATAGCAATGCACTCTGGCAGGTAGATTGTGTCATGTCATACCTGGCCAGCTGAGATGTGGCTGAGATGCAGACCTGCTTAGTTTCAAGAAGATAAGGGTTAAGAAAATAATTGGTAGAGCATCTTCTAGTATTAATAATGTTTTGATTTTTGATGTACATTAGGTGCACCTATCCAGGATGTTAATAGAATTTATGTTTTTAGGTGCATCTGTCAGGGATATTAATTGAATTCCCATGGTAAATATTG

Fln Alignment:

sp_v1.1_unigene28896___RTFLALKSDPLKTRLDLLFKQAYDHLSLINAYAAYARRLKLENMKQVRIFTDQARNYTELMNKPEYRALMDTNDM-IDEETLRQFEKEVKERIKVTRQLIADAKESFDNQLKIQKLKDTIFAVNDQLTRAKKQGAFASLIAAKSIPKSIHCLSMRLMEERISQPEKYIDKG-DPPPQWEDPNLYHYAIFSDNVIXXXXXXXXXXXXXXEPWKHVFHVVTDKMNLAAMQVWFKMRSLNGSHVEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDAPNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMCNFG
Q9LSG3_______________RSMLDIKSDPLKPRLIQIRKQADDHRSLALAYASYARKLKLENSKLVRIFADLSRNYTDLINKPTYRALYDSDGASIEESVLRQFEKEVKERIKMTRQVIAEAKESFDNQLKIQKLKDTIFAVNEQLTNAKKQGAFSSLIAAKSIPKGLHCLAMRLMEERIAHPEKYTDEGKDRPRELEDPNLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLGAMQVMFKLKEYKGAHVEVKAVEDYTFLNSSYVPVLKQLESANLQKFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRALWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIAMNQFRPLWTKHVDYDLEFVQACNFG

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
365	93		6		0.999999
366		93		6	0.999999
369		93	4	2	0.979066
372	1	92		6	1.0
373			6	93	1.0
376			2	97	0.960269
378	5	94			1.0
385	97	2			0.958202
613			96	3	0.993037
614			96	3	0.993037
620	90		7	1	1.0
624	89		10		1.0
628	88		11		1.0
629		93	4	2	0.98137
797		10		90	0.90298
798	10			90	0.90298
799			10	90	0.90298
802		10		90	0.90298
1636	91			8	0.999807
1638	91		8		0.999807
1718		9		90	0.999872
1870		11		88	0.999952
1886	13		86		0.999973
1918	87		12		0.992554
1919	87	12			0.992554
1920	87			12	0.992554
1921	87		12		0.992554
1922	87			12	0.992554
1923	87	12			0.992554
1925	87	12			0.992554
1929	12	87			0.992554
2097	95			4	0.996599
2149		41		58	1.0
2398			12	87	0.992554
2399			87	12	0.992554

SSRs (tot: 3)

Start position	End position	Sequence	Length
137	155	TGAGG TGAGG TGAGG TGAG	19
274	285	GCT GCT GCT GCT	12
284	295	CTC CTC CTC CTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain