SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28895

Length: 1194 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28895

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding / protein binding / zinc ion binding	-	-	2.0e-12	25%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	28%
Blast2go	protein	-	-	1.67461e-26	52%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SANT/Myb domain	IPR001005	-	1.67461e-26	52%
Blast2go	Zinc finger, PHD-type	IPR001965	-	1.67461e-26	52%
Blast2go	Homeodomain-like	IPR009057	-	1.67461e-26	52%
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	1.67461e-26	52%
Blast2go	Homeodomain-related	IPR012287	-	1.67461e-26	52%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	1.67461e-26	52%
Blast2go	Myb-like domain	IPR017877	-	1.67461e-26	52%
Blast2go	Zinc finger, PHD-type, conserved site	IPR019786	-	1.67461e-26	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7THZ7

Fln msg: your sequence is shorter than subject: 350 - 774

Fln protein: TTTGNGMRDIGSKLEIHISGDEKLQQLSSGTKSTSNGHSHCSERRDDGACCLEGETDEPKEESNSEATTTRERNSLEAEELPELDLLIPSKDGQEQTCFKCREGGVLSCCSGCSIAVHEKCFQLDASTIPGETFDCLVCSYKRALVAYQKAKKDAIESKKRLLAFLNSRSVQGKEQRTRNNNHKECEKGGEACANKMKTSEEIFSHTSDFSSGYKKKHAFSKSSGISVHGDKRPGGIENDLPCQQNEAEDDMHGGDLEDGNSDDGKYHLRNRKSTMRGTCRLPGARRNKLVWTKAEEEALQEGMKKFAMGKTNGIPWKRIWEHGKGIFDKSRLPTDLKDKWRNMKKSNS*

Protein Length: 351

Fln nts: ACAACTACTGGAAATGGTATGCGGGATATTGGATCTAAACTAGAAATCCACATTTCTGGAGATGAAAAATTACAGCAGTTATCAAGTGGCACCAAGTCAACTTCTAATGGTCATTCACATTGTAGTGAGAGGAGAGATGATGGGGCTTGTTGCTTGGAAGGAGAAACAGATGAACCCAAGGAGGAAAGCAATTCAGAAGCCACAACTACTAGGGAACGCAATTCACTCGAGGCAGAGGAGTTACCAGAATTGGATTTACTGATACCATCTAAAGATGGTCAGGAACAGACTTGTTTCAAATGTAGAGAAGGCGGAGTATTGTCTTGTTGCAGTGGGTGTTCTATTGCTGTGCATGAAAAATGTTTTCAATTAGATGCATCTACTATTCCAGGTGAAACTTTTGATTGCCTTGTCTGTTCTTACAAAAGAGCCCTTGTAGCTTACCAAAAAGCAAAGAAAGACGCTATAGAATCCAAAAAGAGATTACTTGCATTCCTAAATAGTAGGTCAGTCCAAGGTAAAGAACAGCGAACACGGAACAACAATCATAAGGAATGTGAAAAAGGAGGGGAAGCATGTGCCAACAAAATGAAGACTTCTGAAGAGATTTTTAGTCATACAAGTGATTTTAGTTCAGGTTACAAAAAAAAACATGCATTTAGCAAAAGTTCTGGAATTTCTGTTCATGGAGATAAAAGACCTGGTGGAATTGAAAATGATCTACCATGTCAACAGAATGAAGCTGAAGATGATATGCATGGTGGAGATCTTGAAGATGGTAATAGTGATGATGGGAAATACCACTTACGTAATAGGAAATCCACAATGAGGGGAACCTGTCGTCTGCCTGGTGCACGTAGGAATAAGTTAGTTTGGACAAAGGCTGAAGAGGAGGCTTTGCAGGAAGGTATGAAGAAATTTGCGATGGGCAAAACCAATGGAATCCCGTGGAAACGCATATGGGAACATGGGAAAGGGATTTTTGACAAGTCACGCTTACCTACTGACTTGAAGGATAAATGGCGGAATATGAAGAAGAGTAATTCCTGA___AACATGTCTGTACATTGTACAGTGGCATCCGCTCTGGTCTTGCGAACTCTATAACTGTGTTGCTGAGATTTGTGACTGCATAATACAAGGCAAAATTTCTGAATCAACTATTTCCAATCTAGGAGAATTTTGAATAATTTATAT

Fln Alignment:

sp_v1.1_unigene28895___GDEKLQQLSSGTKSTSNGHSHC--SERRDDGA-CCLEGETDEPKEESNSEATTTRERNSXXXXXXXXXXXXIPSKDGQEQT-CFKCREGGVLSCCS--GCSIAVHEKCFQLDASTIPGETFDCLVCSYKRALVAYQKAKKDAIESKKRLLAFLNSRSVQGKEQRTRNNNHKECEKGGEACANKMKTSEEIF---------SHTSDFSSGYKKKHAFSKSSGISVHGDKRPGGIENDLPCQQNEAEDDMHGGDLEDGNS--DDGKYHLRNRKSTMRGTCR-LPGARRNKLVWTKAEEEALQEGMKKFAMGKTNGIPWKRIWEHGKGIFDKSRLPTDLKDKWRNMKKSN
D7THZ7_______________GDHSSQPKASNDKLPNEAHHKVFVDEAKDDTEHCCEEEMLSDSTEYHDEEDGIAMERQNFLSSKCTFNHDSLSIAGWTEQNLCMKCTKDGQLLVCSSSGCPLVVHENCLGCPPSFDNMGNFYCPFCAYSRAVSEYLESKKKVSLAKKELASFINA-GMKHEPVKPKKKHRKKNEKLNES-ANLVKVCENGHVKEKRQTRANHGDAQVTDQLIRRNVEKHDGVEEQGVANLGVQQEALQQQISDPLEDPASGTSGDENDKPSSSTYYIRFRRQQQQYTFPPIHQLRRKKLAWTAKEEEILKVGVQKFSNDHDKSIPWKKIMEFGGTVFQRGRTTIDLKDKWRNICKGS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
713	66		33		0.997452
728	33		66		0.997452
730		33	66		1.0
737	88			11	0.923564
746	88	11			0.923564
747	66	33			1.0
748		11	88		0.923564
749	88			11	0.923564
750		11		88	0.923564
751	11		88		0.923564
915	16		83		0.994512
979	66		33		0.997452
1094		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain